| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88614 | 132 (0.880) | 258 (1.280) | 68/260 | 0.0 | 79.8% | coding (223/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_3 | 2 = | 0 (0.000) | coding (2/474 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | CRISPR‑associated protein Cas1 | |||||
Only 100 of 391 total aligned reads displayed.
TGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGCTTGTGGGGTTGCTCCTGCAGCTTTAGCTAAATG > TrimmedAssembly_T66_contig_1/88479‑88746 | ggTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACt > 2:2184425/1‑136 (MQ=255) ggTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCggg > 1:420482‑M1/1‑133 (MQ=255) ggTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCggg > 2:2293915‑M1/1‑133 (MQ=255) aGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAg < 1:1498158/136‑1 (MQ=255) tGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggct > 2:458510‑M1/1‑119 (MQ=255) ggggAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTatc < 1:1598288/136‑1 (MQ=255) aaTGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTCTTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATcc > 2:1962809/1‑136 (MQ=255) aaTGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTatcatc < 1:2184425/135‑1 (MQ=255) aaTGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATcc > 1:167200/1‑136 (MQ=255) cctGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttt > 2:2150314‑M1/1‑107 (MQ=255) cctGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttt < 2:2504340‑M1/136‑30 (MQ=255) gtgATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttca > 2:352217‑M1/1‑104 (MQ=255) tgATGTTTTCTGTGGTTACTAAATATCATAATGGAAGGAATTCACTATTTCTAAACAATTAAGAAATCTTTTATGCATTTAAACAAGATATTTTACGCTCTCCggtaggcagttgtggctaataaatatttttaat > 1:986638‑M1/1‑103 (MQ=255) tgATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcat > 2:1248591‑M1/1‑103 (MQ=255) gATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTg < 1:2029372/136‑1 (MQ=255) gATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcatt < 2:1410270‑M1/136‑35 (MQ=255) gATGTTTTCTGTGGTAACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTg < 2:1112471/136‑1 (MQ=255) gTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgtt < 1:476842‑M1/136‑38 (MQ=255) tttCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttat < 2:634696‑M1/136‑40 (MQ=255) tttCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttat < 2:2446782‑M1/136‑40 (MQ=255) cTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttg < 1:1204733‑M1/136‑43 (MQ=255) tgtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCt > 1:273065/1‑136 (MQ=255) gtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggt < 2:1859197‑M1/136‑45 (MQ=255) gtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggt < 1:249868‑M1/136‑45 (MQ=255) gtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggt < 2:825104‑M1/136‑45 (MQ=255) ggTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGt > 1:960880/1‑136 (MQ=255) ggTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtg > 1:2231769‑M1/1‑90 (MQ=255) tAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagtt < 2:937426‑M1/136‑53 (MQ=255) tAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagtt < 2:1563474‑M1/136‑53 (MQ=255) aaaTATCATACGTGAAGGCATTCCCTATTAATATACAATTTATAAAACTTTTGTGCGTTTAAACAAGATATTTTACGCTCTCCACTAAATGATCGTGTATCATCCGCAACGATAGTGGCGAAGTCTTGTAGATaaa > 2:1909500/1‑136 (MQ=255) aaaTATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATaaa > 1:2444165/1‑136 (MQ=255) aaaTATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATaaa > 1:2157803/1‑136 (MQ=255) cATAAGTGAAGGCATTCACTTTTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTTAAGGATCGTGTATCATCCGCAACGATAGTGGCGTAGTATTGTAGATAAATCCAAg < 2:2124387/136‑1 (MQ=255) cATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAg < 1:72157/136‑1 (MQ=255) cATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAg < 1:1752751/136‑1 (MQ=255) cATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAg < 1:401567/136‑1 (MQ=255) aTAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTatcatc < 2:233863/97‑1 (MQ=255) aTAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGc < 2:1070366/136‑1 (MQ=255) gggAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATACGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAATCGaat > 1:2124387/1‑134 (MQ=255) aaGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattt > 2:117741‑M1/1‑69 (MQ=255) aGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagatttt < 1:2338762‑M1/136‑69 (MQ=255) aGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagatttt < 1:2098087‑M1/136‑69 (MQ=255) aTTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACg < 1:20133/92‑1 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagc > 2:2256343‑M1/1‑64 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagc > 1:199555‑M1/1‑64 (MQ=255) ttCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagccc < 1:2251446‑M1/136‑74 (MQ=255) ttCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagccc < 2:1644972‑M1/136‑74 (MQ=255) tATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTatc < 1:2396896/76‑1 (MQ=255) tATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATc > 1:587845/1‑136 (MQ=255) tATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaatta < 1:1043726‑M1/136‑79 (MQ=255) tATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaatta > 2:2364928‑M1/1‑58 (MQ=255) tATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaatta < 2:514854‑M1/136‑79 (MQ=255) tATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaatta < 2:1380723‑M1/136‑79 (MQ=255) ttCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacg < 1:1248591‑M1/136‑82 (MQ=255) cTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgct < 1:1034803‑M1/136‑84 (MQ=255) cTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgct < 2:742857‑M1/136‑84 (MQ=255) ataCAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGaaaa < 1:1329689/136‑1 (MQ=255) taCAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgc > 1:113337‑M1/1‑50 (MQ=255) aaTTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGa > 2:2025747/1‑76 (MQ=255) aaTTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGAt > 2:1214101/1‑136 (MQ=255) aaTTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGAt > 1:1656274/1‑136 (MQ=255) aaTTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGAt > 1:326009/1‑136 (MQ=255) aaTTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGAt > 1:514299/1‑136 (MQ=255) aaTTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGAt > 1:637443/1‑136 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactc > 1:1928714‑M1/1‑47 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactc > 2:973840‑M1/1‑47 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactc > 2:863097‑M1/1‑47 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactc < 2:668306‑M1/136‑90 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactc > 1:1424306‑M1/1‑47 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactc > 1:1721979‑M1/1‑47 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagatttt < 2:276979‑M1/115‑69 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttt < 1:2073030‑M1/76‑30 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttt > 2:2073030‑M1/1‑47 (MQ=255) ttAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGAtagt < 2:167200/136‑1 (MQ=255) tAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTTAATCATACTTATCATGAAAATGAtagta < 1:922910/136‑1 (MQ=255) tAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGAtagta < 1:1014835/136‑1 (MQ=255) tAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGAtagta < 2:1496073/136‑1 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaact > 1:90254‑M1/1‑42 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaact > 1:835116‑M1/1‑42 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagccc < 1:2316534‑M1/115‑74 (MQ=255) aaTCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaactacg < 1:2523170‑M1/135‑97 (MQ=255) tCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGc < 2:1453114/136‑1 (MQ=255) tCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaactacggat > 2:1759719‑M1/1‑37 (MQ=255) tCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaactacggat < 1:117741‑M1/136‑100 (MQ=255) tttATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaactacggatacg < 2:1990250‑M1/136‑103 (MQ=255) tgtgCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGCTtgtg > 2:440584/1‑136 (MQ=255) ttACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaactacggatacgccgtgctgt < 2:2012384‑M1/136‑112 (MQ=255) cacaAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaactacggatacgccgtgctgtta > 1:803202‑M1/1‑22 (MQ=255) cacaAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaactacggatacgccgtgctgtta > 1:774387‑M1/1‑22 (MQ=255) cacaAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaactacggatacg < 2:1475404‑M1/124‑103 (MQ=255) atTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaactacggatacgccgtgctgttatccatggtg > 2:794786‑M1/1‑14 (MQ=255) atTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgct > 2:1580950‑M1/1‑14 (MQ=255) atTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGCTTGTGGGGTTGCTCCTGCAGCtt > 2:1796938/1‑136 (MQ=255) aCGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaactacggatacgccgtgctgttatccatggtgaatcg > 1:695600‑M1/1‑9 (MQ=255) ctctCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgct > 2:1829363‑M1/1‑6 (MQ=255) ctctCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgct < 1:1829363‑M1/89‑84 (MQ=255) tctcCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGCTTGTGGGGTTGCTCCTGCAGCTTTAGCTAAAt < 1:1473981/136‑1 (MQ=255) ctcCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGCTTGTGGGGTTGCTCCTGCAGCTTTAGCTAAATg < 2:326009/136‑1 (MQ=255) ctcCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGCTTGTGGGGTTGCTCCTGCAGCTTTAGCTAAATg < 2:603036/136‑1 (MQ=255) ctcCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGCTTGTGGGGTTGCTCCTGCAGCTTTAGCTAAATg < 2:1286079/136‑1 (MQ=255) | TGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGCTTGTGGGGTTGCTCCTGCAGCTTTAGCTAAATG > TrimmedAssembly_T66_contig_1/88479‑88746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |