| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_28 | = 3183 | 0 (0.000) | 235 (0.350) +TGAGAGTTAAATCTCTCAAAACTAAACAAAGTTTCGACGCG |
58/180 | 1.7 | 100% | intergenic (‑135/–) | rasttk_feature_creation_tool=RNA_reps_LSU_rRNA/– | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA/– |
| ? | TrimmedAssembly_T66_contig_32 | = 1640 | 0 (0.000) | intergenic (+24/–) | rasttk_feature_creation_tool=RNA_reps_SSU_rRNA/– | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/– | |||||
Only 100 of 444 total aligned reads displayed.
CATTTACCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_28/3048‑3183 | aTTTACCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGtttc < 1:610194/136‑2 (MQ=255) tttACCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGtttca < 2:1129358/136‑3 (MQ=255) tACCTAATGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgag > 1:2049952‑M1/1‑132 (MQ=255) tACCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgag > 1:1000212‑M1/1‑132 (MQ=255) tACCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgag > 1:2235309‑M1/1‑132 (MQ=255) aCCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGtttcaatg > 1:573622/1‑131 (MQ=255) ccTAATGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAAAATATTTGATATTATCTAGTTTTCAAAGAACAATATTtgagag > 1:189094‑M1/1‑130 (MQ=255) actggtaaATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagtta < 2:1057461‑M1/133‑10 (MQ=255) ggTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaa > 1:1615151‑M1/1‑124 (MQ=255) tAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatc > 2:2313476‑M1/1‑122 (MQ=255) tAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatc > 1:839440‑M1/1‑122 (MQ=255) tAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatc > 1:1710408‑M1/1‑122 (MQ=255) aaaTGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctc < 2:917436‑M1/136‑16 (MQ=255) gCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaa > 2:2202369‑M1/1‑117 (MQ=255) tAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGAGATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaacta > 1:1647072‑M1/1‑112 (MQ=255) aaTGAGTTTAGCGATAATTACACGTCAATCAAAAACTCAAAACACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaa < 1:864636‑M1/136‑26 (MQ=255) aaTGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttatatctctcaaaactaa > 2:2453376‑M1/1‑111 (MQ=255) aaTGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaattctctcaaaactaa > 2:1945694‑M1/1‑111 (MQ=255) aaTGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaa > 2:1373525‑M1/1‑111 (MQ=255) aaTGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaa > 2:1112784‑M1/1‑111 (MQ=255) aaTGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaa < 2:251709‑M1/136‑26 (MQ=255) aaTGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaa > 1:392854‑M1/1‑111 (MQ=255) aaTGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaa > 2:1199257‑M1/1‑111 (MQ=255) aaTGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATGATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaa > 1:1098807‑M1/1‑111 (MQ=255) gattagCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaa < 1:1187421‑M1/133‑30 (MQ=255) aGCGATAATTAAACTTCAATAAAAAACTCAAAACACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCACAGAACAAGTTTtgagagttaaatctctcaaaactaaacaacgttt < 2:217268‑M1/136‑35 (MQ=255) aGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagttt < 1:422511‑M1/136‑35 (MQ=255) aGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGGTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagttt < 2:683038‑M1/136‑35 (MQ=255) cGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaatcaaagtttcg > 1:1950152‑M1/1‑100 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcga < 2:155127‑M1/136‑38 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcga < 2:1583149‑M1/136‑38 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcga < 2:1796837‑M1/136‑38 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcga < 1:1463867‑M1/136‑38 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcga < 1:503257‑M1/136‑38 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcg < 1:826111‑M1/135‑37 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttc < 2:1902670‑M1/134‑36 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttc < 1:2497435‑M1/134‑36 (MQ=255) gATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttc < 2:781567‑M1/134‑36 (MQ=255) gATAATTAAACTACAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttc < 2:2277272‑M1/134‑36 (MQ=255) tAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgac > 1:2261515‑M1/1‑97 (MQ=255) aaatTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTAGGTTTCATTATGAAAATATATATTTGATATTATCTAGTTTTCATTTAACTAGTTTtgagagttaaatctatcaaaactaaacaaagtttcga < 2:817448‑M1/133‑38 (MQ=255) ttAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgt < 1:67712‑M1/136‑43 (MQ=255) aaaCTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgt > 2:949630‑M1/1‑92 (MQ=255) aaaCTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatc > 2:715763‑M1/1‑92 (MQ=255) tCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTTATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtagg > 2:2506029‑M1/1‑87 (MQ=255) tCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAATTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtagg < 2:757918‑M1/136‑50 (MQ=255) aTAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggttt < 1:154850‑M1/136‑53 (MQ=255) aTAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatatctcaaaactaaacaaagtttcgacgcgtgtgtaggttt < 2:1729112‑M1/136‑53 (MQ=255) tAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggttt > 1:174623‑M1/1‑83 (MQ=255) tAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatatctcaaaactaaacaaagtttcgacgcgtgtgtaggtttc > 1:209789‑M1/1‑83 (MQ=255) aaaaaaCTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttcc > 1:2145413‑M1/1‑82 (MQ=255) aaaaaaCTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcga < 1:1858560‑M1/119‑38 (MQ=255) aaaaaCTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccg > 1:1410808‑M1/1‑81 (MQ=255) aCTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaat > 2:1219922‑M1/1‑77 (MQ=255) cAAAAAACGCGGTGTTCTCGTTTTCATTATGAAATAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatatt < 2:1077573‑M1/136‑63 (MQ=255) cAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatatt < 1:272399‑M1/136‑63 (MQ=255) cAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatatt < 2:566306‑M1/136‑63 (MQ=255) aaCGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattcctta < 2:154454‑M1/136‑68 (MQ=255) tgtTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaagga > 2:33531‑M1/1‑62 (MQ=255) tctcGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggt < 1:2434915‑M1/136‑78 (MQ=255) ctcGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtg < 1:306931‑M1/136‑79 (MQ=255) aTTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagcc > 2:1340139‑M1/1‑49 (MQ=255) aTTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatatt < 2:2534652‑M1/111‑63 (MQ=255) aTTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatatt > 1:2534652‑M1/1‑49 (MQ=255) ttATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgc < 1:1060178‑M1/136‑89 (MQ=255) ttATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgc < 1:125500‑M1/136‑89 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 2:493599‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca < 2:2082770‑M1/136‑90 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 2:552866‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 2:1696474‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 1:2409166‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca > 1:2332411‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgca < 1:949630‑M1/136‑90 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccggaatattccttataaaggaggtgatccagccgca > 2:2237772‑M1/1‑47 (MQ=255) tATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctca < 1:1512516‑M1/65‑19 (MQ=255) aaaaaTATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttc < 1:1785001‑M1/136‑95 (MQ=255) aaaaaTATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttc < 1:757732‑M1/136‑95 (MQ=255) aaaaaTATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttc < 2:2035334‑M1/136‑95 (MQ=255) aaaaaTATATTTGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggt > 2:241300‑M1/1‑42 (MQ=255) tttGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttatatctctcaaaaataaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggc < 2:422555‑M1/136‑104 (MQ=255) ttGATATTATCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggct < 1:1118288‑M1/136‑105 (MQ=255) ttatCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttg < 2:1848661‑M1/136‑111 (MQ=255) ttatCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttg < 1:1149511‑M1/136‑111 (MQ=255) ttatCTAGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttg < 1:907578‑M1/136‑111 (MQ=255) atatcTAGTTTACAAAGAACACGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttg < 1:2290168‑M1/135‑111 (MQ=255) atCTAGTTTTCACAGAACCAGTTTtgagagttaaatcgctcaaaactaaacaaagtgtcgacgcgtgtgtaggtttccgtaagagtccgtcgaaaggaggtgatccagccgcaggttctcctacggctaccttg < 2:1975174‑M1/134‑111 (MQ=255) cctatacaaagaaCAAGAATtgagacataaaacactcaaaacaaaacaaagtttcgacgcgtgagtaggtttccctaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccaggttacga < 2:1183949‑M1/130‑117 (MQ=255) aGTTTTCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacg > 1:1320304‑M1/1‑20 (MQ=255) tttCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgact < 1:220202‑M1/135‑119 (MQ=255) tCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttc > 1:1016364‑M1/1‑15 (MQ=255) tCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttc > 2:30957‑M1/1‑15 (MQ=255) tCAAAGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggtt < 1:1923120‑M1/108‑94 (MQ=255) aaaGAACAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcac > 1:230649‑M1/1‑13 (MQ=255) aCAAGTTTtgagatttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttataaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttgaccctaat < 1:1578794‑M1/136‑129 (MQ=255) aCAAGTTTtgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaat < 1:1360486‑M1/136‑129 (MQ=255) tttgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaatcatct < 1:1219922‑M1/135‑134 (MQ=255) tttgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaatcatct < 2:833525‑M1/135‑134 (MQ=255) tttgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaatcatct < 2:839440‑M1/135‑134 (MQ=255) tttgagagttaaatctctcaaaactaaacaaagtttcgacgcgtgtgtaggtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaatcatc < 1:2024558‑M1/134‑133 (MQ=255) tttgagagttaaatctctcaaaactaaacaaagttacgacgcgtgtgtatgtttccgtaatattccttagaaaggaggtgatccagccgcaggttctcctacggctaccttgttacgacttcaccctaatcatct < 2:1453660‑M1/135‑134 (MQ=255) | CATTTACCTAACGGTAAATGCGATTAATGAGTTTAGCGATAATTAAACTTCAATAAAAAACTCAAAAAACGCGGTGTTCTCGGTTTCATTATGAAAAAATATATTTGATATTATCTAGTTTTCAAAGAACAAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_28/3048‑3183 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |