| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_12 | 1 = | 0 (0.000) | 97 (0.310) +ATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTT |
34/140 | 0.1 | 100% | intergenic (–/‑8) | –/rasttk_feature_creation_tool=tRNAscan‑SE | –/tRNA‑Asn‑GTT |
| ? | TrimmedAssembly_T66_contig_28 | 1 = | 0 (0.000) | intergenic (–/+125) | –/rasttk_feature_creation_tool=RNA_reps_LSU_rRNA | –/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
Only 100 of 713 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTGGTTAAGTC > TrimmedAssembly_T66_contig_28/1‑136 | ggcgggctcgaaccgtcgacatcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagctta < 2:950320‑M1/1‑1 (MQ=255) aaccgtcgacatcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTgtgt < 2:2039619‑M1/11‑1 (MQ=255) acatcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACAAgg > 2:1085631‑M2/117‑136 (MQ=255) catcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATgg > 1:1397880‑M1/116‑135 (MQ=255) catcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATgg > 1:1924565‑M1/116‑135 (MQ=255) catcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATgg > 1:1266975‑M1/116‑135 (MQ=255) catcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATgg > 2:866004‑M1/116‑135 (MQ=255) caagcgctctaccaactgtgctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTtc > 1:1799267‑M1/100‑136 (MQ=255) aagcgctctaccaactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTtc < 1:1524765‑M1/37‑1 (MQ=255) agcgctctaccaactgagctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTtctc < 2:2381543‑M2/39‑1 (MQ=255) agcgctctaccaactgagctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTtctc < 1:418005‑M2/39‑1 (MQ=255) taccaactgagctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCg < 1:2278856‑M2/46‑1 (MQ=255) caactgagctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTc > 1:2143414‑M2/88‑135 (MQ=255) caactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTc < 2:1628446‑M1/48‑1 (MQ=255) caactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTc < 2:2416081‑M1/48‑1 (MQ=255) caactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTc < 1:630190‑M1/48‑1 (MQ=255) gagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGc < 1:325370‑M1/41‑1 (MQ=255) gagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTcaccac < 1:922437‑M1/53‑1 (MQ=255) atgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTAtt < 1:2080189‑M1/59‑1 (MQ=255) cggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTgaga > 1:1949853‑M2/74‑136 (MQ=255) cggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTgaga > 1:1086994‑M2/74‑136 (MQ=255) cggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTgaga > 2:2269505‑M2/74‑136 (MQ=255) taatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACtt > 1:2492186‑M2/69‑136 (MQ=255) taatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAACCtt < 2:828960‑M1/68‑1 (MQ=255) atttcgcatggcgacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACtt < 1:722063‑M1/68‑1 (MQ=255) atttcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGc > 1:1581788‑M1/69‑109 (MQ=255) aatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTtg < 1:510700‑M1/69‑1 (MQ=255) ttcgcatggcgacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACtt > 1:2382979‑M1/67‑134 (MQ=255) atcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTtgt < 2:188220‑M2/70‑1 (MQ=255) tgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGc < 2:477996‑M2/72‑1 (MQ=255) ggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCa > 1:401717‑M2/60‑136 (MQ=255) ggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCa > 1:553152‑M2/60‑136 (MQ=255) ggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagctcAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCa > 2:515174‑M2/60‑136 (MQ=255) gcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCaa > 1:2235114‑M2/59‑136 (MQ=255) aacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCaaaa > 2:1997064‑M1/57‑136 (MQ=255) cgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACt > 2:1722506‑M2/55‑136 (MQ=255) ctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGAc > 1:447292‑M2/51‑136 (MQ=255) cctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACt > 1:954172‑M2/47‑113 (MQ=255) tcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATc > 2:1588179‑M2/45‑136 (MQ=255) tcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATc > 2:910903‑M2/45‑136 (MQ=255) tcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATc > 1:2036691‑M2/45‑136 (MQ=255) agggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATgg < 2:700358‑M2/20‑1 (MQ=255) agggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATgg > 1:700358‑M2/41‑60 (MQ=255) agggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCg > 2:1361574‑M2/41‑86 (MQ=255) agggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTTACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat > 1:294922‑M2/41‑136 (MQ=255) agggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat > 2:2537394‑M2/41‑136 (MQ=255) agggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat > 1:844438‑M2/41‑136 (MQ=255) agggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat > 2:1222970‑M2/41‑136 (MQ=255) agggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat > 2:271327‑M2/41‑136 (MQ=255) agggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat < 2:608092‑M1/96‑1 (MQ=255) agggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat < 2:1173227‑M1/96‑1 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATgg < 1:1724664‑M2/20‑1 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTAt > 2:2349607‑M2/40‑97 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 2:336963‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 2:1542606‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 1:761435‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 1:2450815‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 2:2461058‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTAt < 2:384888‑M1/58‑1 (MQ=255) gggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata < 2:1128993‑M1/97‑1 (MQ=255) ggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAgg < 1:2415175‑M2/27‑1 (MQ=255) gagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata < 2:1783192‑M2/97‑1 (MQ=255) gagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 2:1929923‑M1/38‑134 (MQ=255) gatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGa > 1:1232338‑M2/34‑48 (MQ=255) gatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTc < 2:1023664‑M2/102‑1 (MQ=255) gatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTc < 1:1848819‑M2/102‑1 (MQ=255) gatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCa > 2:747419‑M2/34‑136 (MQ=255) gatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCa < 2:2214620‑M1/103‑1 (MQ=255) tcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCat < 1:13550‑M2/104‑1 (MQ=255) tcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACAATTGAGAAACTAGGGCTCTCAAAACTAGACAATATCAAATATCTtcaga > 2:2098071‑M2/32‑134 (MQ=255) ccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATg < 2:1500428‑M2/107‑1 (MQ=255) ccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATg > 2:2159679‑M2/30‑136 (MQ=255) aactcctctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAAcc > 2:1450660‑M2/26‑136 (MQ=255) actactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCg < 1:584351‑M2/112‑1 (MQ=255) actactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCg < 2:413223‑M2/112‑1 (MQ=255) ctactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCgg > 1:2208299‑M2/24‑136 (MQ=255) ctactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCgg > 1:1197007‑M2/24‑136 (MQ=255) ctactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCgg > 1:1000382‑M2/24‑136 (MQ=255) ctctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAac < 2:1662969‑M2/116‑1 (MQ=255) tcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACAcc > 2:1282089‑M2/18‑136 (MQ=255) gcgctaagaagcttAACTTCTGTGTTCGACATGGGACCAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAt > 1:2523106‑M2/15‑136 (MQ=255) gcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAt > 1:880101‑M2/15‑136 (MQ=255) gcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAt > 2:791769‑M2/15‑136 (MQ=255) cgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGgt < 1:1491603‑M2/28‑1 (MQ=255) gctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAtt < 2:1336158‑M2/123‑1 (MQ=255) gctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAtt > 1:1048776‑M2/13‑135 (MQ=255) gctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAtt > 1:1320891‑M2/13‑135 (MQ=255) gctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAtt < 1:1881939‑M2/123‑1 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACTCCAATTACTTg > 2:2304526‑M1/9‑136 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 1:1140031‑M1/9‑136 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 2:1843550‑M1/9‑136 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 2:567979‑M1/9‑136 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 2:1312640‑M1/9‑136 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 1:362983‑M1/9‑136 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 1:2346359‑M1/9‑136 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 1:1638409‑M1/9‑136 (MQ=255) agaagcttAACTTCTGAGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 2:296570‑M1/9‑136 (MQ=255) gaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTgg < 1:145872‑M1/129‑1 (MQ=255) aaCTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg < 1:1999272/128‑1 (MQ=255) aaCTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTGGTTAAGt > 1:1426112/1‑135 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTGGTTAAGTC > TrimmedAssembly_T66_contig_28/1‑136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |