| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | TrimmedAssembly_T66_contig_1 | 88,020 | G→A | A159A (GCC→GCT) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 ← | Transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | TrimmedAssembly_T66_contig_1 | 88,020 | 0 | G | A | 95.1% | 181.6 / 3.4 | 82 | A159A (GCC→GCT) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Transposase |
| Reads supporting (aligned to +/- strand): ref base G (2/2); new base A (44/34); total (46/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATGGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAACCGTGGCTTTGGAGTAGTGAGCACCGTACATT > TrimmedAssembly_T66_contig_1/87888‑88128 | tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 2:1914405/1‑136 (MQ=21)tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 2:2348861/1‑136 (MQ=21)tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 1:278670/1‑136 (MQ=21)tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 1:2196050/1‑136 (MQ=21)tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 1:2104286/1‑136 (MQ=21)tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 1:2030109/1‑136 (MQ=21) gATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCg < 2:2401986/136‑1 (MQ=21) aTTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGc > 1:2277944/1‑136 (MQ=21) ccGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCata > 2:2244422/1‑136 (MQ=21) ccGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCata > 2:839840/1‑136 (MQ=21) cGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCatat < 1:1380744/136‑1 (MQ=21) gTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATAtt > 1:1174564/1‑136 (MQ=21) gTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATAtt < 2:1524057/136‑1 (MQ=21) gTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATAtt > 1:24561/1‑136 (MQ=21) cGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATtg < 1:1464408/135‑1 (MQ=18) cgcCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGaa > 2:1149786/1‑136 (MQ=17) cgcCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGaa > 2:2450467/1‑136 (MQ=17) cACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGcc < 2:1850836/136‑1 (MQ=17) tAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGa < 2:251094/135‑1 (MQ=17) ttCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGtt > 1:1007553/1‑136 (MQ=17) aGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATGGCCGCATATTGTGAAGCCAGTCGACGtt > 1:1252160/1‑133 (MQ=32) aGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGtt > 1:1852151/1‑133 (MQ=17) aGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGtt > 1:141152/1‑133 (MQ=17) aGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGtt > 2:734029/1‑133 (MQ=17) aGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTAACCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGtt > 1:1675806/1‑133 (MQ=17) cACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTgg > 2:2399327/1‑136 (MQ=17) cACTACTTTCGTACCATCAGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCAAGTCGACGTTGCTgg > 1:177333/1‑136 (MQ=255) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 1:526646/133‑1 (MQ=17) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 1:296779/133‑1 (MQ=17) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 1:2416337/133‑1 (MQ=17) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 1:1187689/133‑1 (MQ=17) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 1:2257095/133‑1 (MQ=17) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 2:155435/133‑1 (MQ=17) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 2:278670/133‑1 (MQ=17) ttcttTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGaaa > 1:1753070/1‑136 (MQ=17) ttcttTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGaaa > 2:1813217/1‑136 (MQ=17) tacttACGTACCATCTGTAATAATTCCAATAGAAATATGAACCGAATAATTATGAACTGTATCACGCTTTAACGGAAAGTAAGTGGCATCTAAGAATATAGCCGCATAATTTGAAGACAGTCGACGTTTCTGGaaa > 2:1114305/3‑136 (MQ=2) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGTAGATAGCCGCATATTGTGAAGCCAGTCGACGATGCTGGAAAGCTTg > 2:2354864/1‑136 (MQ=12) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc < 1:1240765/98‑1 (MQ=18) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 2:1240765/1‑98 (MQ=18) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg > 2:1662727/1‑136 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg > 1:1850679/1‑136 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg > 1:722163/1‑136 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg > 1:1722162/1‑136 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg > 1:231633/1‑136 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg > 1:38408/1‑136 (MQ=17) tCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGt > 1:164460/1‑135 (MQ=17) tGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCa > 2:1498171/1‑136 (MQ=17) tGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCa > 1:361717/1‑136 (MQ=17) ggACGAATGCCCATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 2:636601/136‑1 (MQ=17) ggACGAATGCCAATCGCAATCTGAACCGCTTCTTTTTGAACGGTATCCCGCTATAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATCTTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 2:2062135/136‑1 (MQ=255) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCTTCTAAGAAGATAGCCGCATATTGTTAAGCCTGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 1:121484/136‑1 (MQ=255) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATCTTGTGAAGCCAGTCGACGTTGCTGGACAGCTTGAACCTGTTCAt > 2:1356954/1‑136 (MQ=12) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 2:2168542/136‑1 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 2:1819224/136‑1 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 1:762466/136‑1 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 2:1768294/136‑1 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 1:148275/136‑1 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt > 1:1848399/1‑136 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt > 2:1044816/1‑136 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 1:2244422/136‑1 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt > 1:2404523/1‑136 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt > 1:2404546/1‑136 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCAAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt > 1:446618/1‑136 (MQ=17) gAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGAc > 1:1501552/1‑136 (MQ=17) cAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCttt > 2:1784643/1‑136 (MQ=17) cAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCttt > 1:698549/1‑136 (MQ=17) cAATCGCAATATGAACCGCTTCTTTTTGAACGGTAACCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAATCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCttt > 1:2203020/1‑136 (MQ=12) aaTCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTa < 2:909707/136‑1 (MQ=17) aaTCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTa < 2:909615/136‑1 (MQ=17) aaTCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTa < 1:1782568/136‑1 (MQ=17) aaTCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTa < 1:355487/136‑1 (MQ=17) aaTCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTa < 2:1305255/136‑1 (MQ=17) atatGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGt < 2:2030109/136‑1 (MQ=17) aCCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGaaa < 2:2456385/136‑1 (MQ=17) aCCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGaaa < 1:865177/136‑1 (MQ=17) aCCGCTTCATTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGaaa < 2:1102309/136‑1 (MQ=17) ccGCTTCTTTTTGAACGGTATCCCGCTTTAACGTCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAAc < 2:1929001/136‑1 (MQ=14) ccGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAAc < 2:198488/136‑1 (MQ=14) ttatttttGAACGGTATCCGTCTTTAACGGCTAGTAAGTGGCATCTAAGAAGTTGGCCGCATATTGTTAAGCCAGTCGACGTTGCTTGAAAGCTTGAACCTGTTCATTGACGGATTTAGTCATGTTGGAAACCGTg < 2:31483/133‑1 (MQ=1) ttagAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATGGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAACCGTGGCttt < 2:2346707/133‑1 (MQ=1) cgggacgtaagtGGCATCTAAGAAGATGGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAACCGTGGCTTTGGAGTAGTGAGCACCGTACAtt > 2:1276641/7‑136 (MQ=1) | TGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATGGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAACCGTGGCTTTGGAGTAGTGAGCACCGTACATT > TrimmedAssembly_T66_contig_1/87888‑88128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |