| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_13 | = 94334 | 0 (0.000) | 234 (0.900) | 76/258 | 0.3 | 71.9% | intergenic (+21/–) | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Ala‑CGC/– |
| ? | TrimmedAssembly_T66_contig_9 | = 132 | 183 (0.730) | intergenic (–/+127) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
Only 100 of 235 total aligned reads displayed.
TTGCACGACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_13/94202‑94334 | ttGCACGACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAaga < 1:2322551‑M1/136‑4 (MQ=255) tGCACGACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAATCAagag > 1:2537097‑M1/1‑132 (MQ=255) gCACGACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagagg < 2:1835013‑M1/136‑6 (MQ=255) gCACGACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagagg < 1:153759‑M1/136‑6 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 2:1598921‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 2:690703‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 1:2593312‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 2:341387‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 2:2003551‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 2:2654703‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 2:10045‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 2:1154816‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagagg > 1:93549‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagagg < 2:93549‑M1/132‑6 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATGTTAATAGACATCAAAATCAagaggctgt > 1:2383919‑M1/1‑127 (MQ=255) gACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAAGGTCCATTTTAATAGACATCAAAAACAagaggctgt > 1:891695‑M1/1‑127 (MQ=255) cTAGCATTTTGCGGTATACTAAAATTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCAGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtg < 2:2182371‑M1/135‑11 (MQ=255) cTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtga < 1:10045‑M1/136‑12 (MQ=255) cTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtga < 1:441441‑M1/136‑12 (MQ=255) cTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtg < 1:2101655‑M1/135‑11 (MQ=255) aGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgaca > 2:1787348‑M1/1‑123 (MQ=255) aTTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataa > 2:2223515‑M1/1‑120 (MQ=255) ttGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtc < 1:1787348‑M1/136‑20 (MQ=255) cGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctct > 1:2815104‑M1/1‑114 (MQ=255) ggTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctcta > 2:1365042‑M1/1‑113 (MQ=255) ggTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTAGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctct < 1:1456572‑M1/135‑23 (MQ=255) tataCTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctag < 1:1727423‑M1/135‑25 (MQ=255) cTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaaca < 2:1324128‑M1/136‑30 (MQ=255) cTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaaca < 1:2168646‑M1/136‑30 (MQ=255) gtgtATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacag > 2:1969922‑M1/1‑101 (MQ=255) tATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacagg > 1:128586‑M1/1‑98 (MQ=255) ttGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAATTCAGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaatacaggtctg > 2:2256323‑M1/1‑96 (MQ=255) ttGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctg > 2:520004‑M1/1‑96 (MQ=255) gCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttc > 2:2818256‑M1/1‑85 (MQ=255) gCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttc > 1:1077444‑M1/1‑85 (MQ=255) gCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttc > 1:363423‑M1/1‑85 (MQ=255) gCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATATTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaatacaggtctggaaaaatcttc > 2:1536111‑M1/1‑85 (MQ=255) gCTCAGTGGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAATACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttc > 2:2070460‑M1/1‑85 (MQ=255) tCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcg < 2:2497910‑M1/135‑53 (MQ=255) tGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttt > 1:2784140‑M1/1‑78 (MQ=255) gggAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggattttt < 1:237023‑M1/136‑60 (MQ=255) ggAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggattttt > 2:86677‑M1/1‑76 (MQ=255) ggAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggattttt > 2:1233397‑M1/1‑76 (MQ=255) ggAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttc > 2:770309‑M1/1‑76 (MQ=255) ggAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATGTTAATAGACATCAAAAACAagtggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggattttt > 1:2737082‑M1/1‑76 (MQ=255) gagCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaaccggtctggaaaaatcttcggatttttcca < 2:1565382‑M1/135‑63 (MQ=255) gagCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttcca < 1:86677‑M1/135‑63 (MQ=255) gagCGCCAGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATATTAAGAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttcca < 2:746638‑M1/135‑63 (MQ=255) gcgcCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctct < 1:1742552‑M1/93‑23 (MQ=255) gcgcCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctct > 2:1742552‑M1/1‑71 (MQ=255) ccTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccaga > 2:522613‑M1/1‑68 (MQ=255) ccTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccaga > 1:2655587‑M1/1‑68 (MQ=255) cTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgt > 1:2613271‑M1/1‑67 (MQ=255) cTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgt > 1:143275‑M1/1‑67 (MQ=255) cTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgt > 2:106939‑M1/1‑67 (MQ=255) cTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaaca < 2:2526177‑M1/96‑30 (MQ=255) tGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaatcaggtctggaaaaatcttcggatttttccagacctgtt > 1:1678546‑M1/1‑66 (MQ=255) tGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtt > 2:1684160‑M1/1‑66 (MQ=255) tCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttg > 1:1752183‑M1/1‑62 (MQ=255) tCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaaca > 2:2014837‑M1/1‑62 (MQ=255) tCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaaca < 1:2014837‑M1/96‑35 (MQ=255) gCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataa < 1:2005292‑M1/136‑81 (MQ=255) gCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataa > 2:2707924‑M1/1‑56 (MQ=255) aggTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaa > 1:2054353‑M1/1‑51 (MQ=255) cgGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaa < 2:828871‑M1/135‑92 (MQ=255) ggTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaa > 2:91608‑M1/1‑43 (MQ=255) cAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaaga < 2:363423‑M1/136‑98 (MQ=255) aaaTCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagag < 1:158787‑M1/136‑99 (MQ=255) aaaTCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaaga > 1:788035‑M1/1‑38 (MQ=255) tCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaatataaaaagagca > 2:2586485‑M1/1‑35 (MQ=255) tCCGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcat < 1:264248‑M1/136‑102 (MQ=255) cGGTAGTCTACATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcg < 1:2223515‑M1/136‑104 (MQ=255) cGGTAGGGTCCATTTTAATAGACATCAAAAACAagcggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcg < 2:499921‑M1/136‑104 (MQ=255) cGGTAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcg < 2:2784142‑M1/136‑104 (MQ=255) tgtAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaccaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcgg < 2:2156829‑M1/135‑105 (MQ=255) tAGGGTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgattttgatataatagaaaataaaaaaagagcatcggt < 2:87087‑M1/135‑106 (MQ=255) gggTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaatgagcatcggtcgc > 2:1346420‑M1/1‑28 (MQ=255) gggTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgc > 1:1555748‑M1/1‑28 (MQ=255) gggTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgc > 2:2845951‑M1/1‑28 (MQ=255) gggTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgc > 2:2574872‑M1/1‑28 (MQ=255) gTCCATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgc < 1:1343102‑M1/134‑109 (MQ=255) cATTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccg < 1:2686783‑M1/136‑114 (MQ=255) aTTTTAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccga > 1:2208935‑M1/1‑22 (MQ=255) ttAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgat > 2:1577557‑M1/1‑19 (MQ=255) tAATAGACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatact < 1:1966255‑M1/136‑119 (MQ=255) tAATAGACATCAAAAACAagaggctgtgacataagtatatagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatact < 1:2530360‑M1/136‑119 (MQ=255) gACATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacg > 1:270402‑M1/1‑13 (MQ=255) aCATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccg < 2:2457766‑M1/125‑114 (MQ=255) aCATCAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccg > 1:2457766‑M1/1‑12 (MQ=255) cAAAAACAagaggctgtgacttaattctctagaaacaaaactggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaatt < 1:1598921‑M1/136‑129 (MQ=255) cAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaatt < 1:1153511‑M1/136‑129 (MQ=255) cAAAAACAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaatt > 2:1906244‑M1/1‑8 (MQ=255) aaaaaCAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccatacctgtttttgatataatagaaaaaaaaaaaagagcatcggtcgcacccgataatctacgaaatta > 1:73633‑M1/1‑7 (MQ=255) aaaaaCAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatataaaataaaaaaagagcatcggtcgcacccgatactctacgaaatta > 1:550655‑M1/1‑7 (MQ=255) aaaaaCAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaatta > 1:659474‑M1/1‑7 (MQ=255) aaaaaCAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaatta > 2:442571‑M1/1‑7 (MQ=255) aaaaaCAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaatta > 2:2738234‑M1/1‑7 (MQ=255) aaaaaCAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaatta > 2:1617491‑M1/1‑7 (MQ=255) aCAagaggctgtgacataagtctctagaaacaaaacaggtctggaaaaatcttcggatttttccagacctgtttttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaattatcct < 1:1224803‑M1/136‑134 (MQ=255) aCAagaggctgtgaaataagtctctagaaacaaaacaggtcttgaaaaatcttcggatttttccagacctgtatttgatataatagaaaataaaaaaagagcatcggtcgcacccgatactctacgaaattatcct < 2:2216113‑M1/136‑134 (MQ=255) | TTGCACGACTAGCATTTTGCGGTATACTAAAAGTGTATTGGGCCCTTAGCTCAGTTGGGAGAGCGCCTGCTTCGCATGCAGGAGGTCGTCGGTTCAAATCCGGTAGGGTCCATTTTAATAGACATCAAAAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_13/94202‑94334 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |