BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	TrimmedAssembly_T66_contig_3	= 176241	303 (1.060)	158 (0.600) +CAGCAGAACT	62/240	0.9	37.2%	coding (374/804 nt)	rasttk_feature_annotation_tool=annotate_proteins_km er_v2	hypothetical protein
*	?	TrimmedAssembly_T66_contig_3	176327 =	274 (0.960)	158 (0.600) +CAGCAGAACT	62/240	0.9	37.2%	coding (288/804 nt)	rasttk_feature_annotation_tool=annotate_proteins_km er_v2	hypothetical protein

Only 100 of 478 total aligned reads displayed.

AGCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAG  >  TrimmedAssembly_T66_contig_3/176108‑176376

agCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAagtagt                                                                                                                                        <  1:2713565/135‑1 (MQ=255)

agCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAgtagta                                                                                                                                       <  2:2655629/136‑1 (MQ=255)

 gCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAgtagta                                                                                                                                       >  2:124534/1‑135 (MQ=255)

  cACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGc                                                                                                                                     >  2:821386/1‑136 (MQ=255)

   aCTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGtagtag                                                                                                                                      <  2:404792/134‑1 (MQ=255)

   aCTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGtagtag                                                                                                                                      <  2:593616/134‑1 (MQ=255)

      tgatgaAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACGCTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaa                                                                                                                                 <  2:549576‑M1/136‑9 (MQ=255)

      tgatgaAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGaa                                                                                                                                 <  1:1437190/136‑1 (MQ=255)

       gatgaAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcaga                                                                                                                                  >  2:131124‑M1/1‑127 (MQ=255)

       gatgaAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGaagcaga                                                                                                                                  >  2:1401283‑M1/1‑127 (MQ=255)

       gatgaAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGa                                                                                                                                  >  1:682431/1‑134 (MQ=255)

        atgaATCTTGACTAGTGGTTGCAGGAGAACTTGAAGCTAGGCTAGCAGCTGATTGCGTTGAGCTAGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaact                                                                                                                               >  2:925859‑M1/1‑126 (MQ=255)

        atgaAGCTTGACTAGTGGTTGCGGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGATGCTGATTTAGTAGaagcagaact                                                                                                                               >  1:1702528‑M1/1‑126 (MQ=255)

          gaAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACtag                                                                                                                             >  2:1045105/1‑136 (MQ=255)

            aGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACtagt                                                                                                                            <  1:43099/135‑1 (MQ=255)

                tGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagctt                                                                                                                       <  2:535446‑M1/136‑19 (MQ=255)

                tGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagctt                                                                                                                       <  1:510103‑M1/136‑19 (MQ=255)

                 gACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTg                                                                                                                      >  2:1130812/1‑136 (MQ=255)

                    tAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggct                                                                                                                   >  2:692979‑M1/1‑114 (MQ=255)

                     aGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggcta                                                                                                                  >  1:1541111‑M1/1‑113 (MQ=255)

                          ttGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagtt                                                                                                               >  1:2241422‑M1/1‑108 (MQ=255)

                          ttGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCa                                                                                                               >  1:1249149/1‑134 (MQ=255)

                          ttGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCa                                                                                                               >  2:364508/1‑134 (MQ=255)

                          ttGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACGGGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagtt                                                                                                               >  2:31829‑M1/1‑108 (MQ=255)

                           tGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgc                                                                                                             <  1:2807675‑M1/135‑29 (MQ=255)

                           tGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAAc                                                                                                             <  2:963469/135‑1 (MQ=255)

                              agcagAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctga                                                                                                          <  2:2341743‑M1/135‑32 (MQ=255)

                              agcagAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGAt                                                                                                         >  1:2513124/1‑136 (MQ=255)

                              agcagAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGAt                                                                                                         >  2:2611741/1‑136 (MQ=255)

                               gcagAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGAtt                                                                                                        >  1:1004052/1‑136 (MQ=255)

                               gcagAACATGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCGTGCTGAATAAGCAGCACTCGTTGCAACACGTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGTACTAGTAGCGTGGCTAGCAACTGAtt                                                                                                        >  2:887667/1‑136 (MQ=255)

                                cagAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATtg                                                                                                       >  1:1389663/1‑136 (MQ=255)

                                 agAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATtgt                                                                                                      >  2:1779996/1‑136 (MQ=255)

                                 agAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATtgt                                                                                                      >  1:2762800/1‑136 (MQ=255)

                                    aCTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggt                                                                                                   <  1:969111‑M1/136‑39 (MQ=255)

                                    aCTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtg                                                                                                     <  1:118102‑M1/134‑37 (MQ=255)

                                    aCTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTgaa                                                                                                   <  2:2446973/136‑1 (MQ=255)

                                    aCTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTga                                                                                                    <  1:2113734/135‑1 (MQ=255)

                                     cTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTgaag                                                                                                  <  2:1523706/136‑1 (MQ=255)

                                      ttGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTgaaga                                                                                                 <  1:69822/136‑1 (MQ=255)

                                      ttGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTgaaga                                                                                                 <  1:1818816/136‑1 (MQ=255)

                                        gAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTgaagaa                                                                                                >  1:296061/1‑135 (MQ=255)

                                           gCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagc                                                                                              >  2:16293‑M1/1‑91 (MQ=255)

                                           gCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGc                                                                                              >  2:2261274/1‑134 (MQ=255)

                                                  tAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagc                                                                                     >  1:2203705‑M1/1‑84 (MQ=255)

                                                  tAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGc                                                                                     >  2:2079986/1‑136 (MQ=255)

                                                  tAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGc                                                                                     >  1:2390573/1‑136 (MQ=255)

                                                          gATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGc                                                                               >  1:1857278/1‑134 (MQ=255)

                                                            ttGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtc                                                                           <  2:1585229‑M1/136‑63 (MQ=255)

                                                            ttGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTc                                                                           <  2:2044756/136‑1 (MQ=255)

                                                              gCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgt                                                                         >  2:1965643‑M1/1‑72 (MQ=255)

                                                                gTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtgg                                                                       <  2:2206539‑M1/136‑67 (MQ=255)

                                                                  tGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggt                                                                      <  1:49387‑M1/135‑68 (MQ=255)

                                                                  tGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggt                                                                      <  1:2323972‑M1/135‑68 (MQ=255)

                                                                   gAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttg                                                                    <  2:2791107‑M1/136‑70 (MQ=255)

                                                                       ttGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttg                                                                 <  1:906843‑M1/135‑73 (MQ=255)

                                                                           tGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAagca                                                            <  2:2835412/136‑1 (MQ=255)

                                                                           tGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAagc                                                             <  1:262211/135‑1 (MQ=255)

                                                                           tGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAagc                                                             <  1:47949/135‑1 (MQ=255)

                                                                            gaataaGCAGCACTCGTTGCAACACTTGAAGAAGCTAGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACAGGCACTCGATGCAGTTGAagca                                                            >  2:2699724/1‑135 (MQ=255)

                                                                            gaagaaGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagacgtggttgttgtagtag                                                           >  2:1438993‑M1/1‑58 (MQ=255)

                                                                            gaagaaGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACtagta                                                                                                                           >  2:1818108/1‑72 (MQ=255)

                                                                            gaagaaGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAagcag                                                           <  2:2302526/136‑1 (MQ=255)

                                                                            gaagaaGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAagca                                                            >  1:330577/1‑135 (MQ=255)

                                                                            gaagaaGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAagca                                                            >  2:1071597/1‑135 (MQ=255)

                                                                                 agcagcACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtac                                                        <  1:21472‑M1/134‑82 (MQ=255)

                                                                                           gTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCtt                                            <  1:1310715/136‑1 (MQ=255)

                                                                                              gCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagct                                         <  2:1481816‑M1/136‑97 (MQ=255)

                                                                                              gCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTg                                           >  2:1915402/1‑134 (MQ=255)

                                                                                              gCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGc                                         <  2:2232186/136‑1 (MQ=255)

                                                                                                 acacTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAg                                      <  1:1915402/136‑1 (MQ=255)

                                                                                                   acTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGtt                                    <  2:1004052/136‑1 (MQ=255)

                                                                                                         aGTTGCTTGGCTAGCTGCTGAAGTAGTAGTAGCAGAACTAGTAGCTTGGCTAGCTTCTGATTGTGATGATGCACTAGTAGCACTGGCACTCGTTGCTGTTGAAGCAGCTGAAGAAGTTGCTTGGCTAGTTGCTGa                               <  1:1351633/135‑1 (MQ=255)

                                                                                                         aGTAGCTTGGCTAGCAGCTGTAGAAGTAGTAGAAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCTCTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTgt                               <  1:2350759/135‑2 (MQ=255)

                                                                                                         aGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGa                               <  1:1045105/135‑1 (MQ=255)

                                                                                                         aGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGa                               <  1:390419/135‑1 (MQ=255)

                                                                                                         aGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGa                               <  1:539581/135‑1 (MQ=255)

                                                                                                         aGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGa                               <  2:1996431/135‑1 (MQ=255)

                                                                                                          gTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatga                             >  2:1323589‑M1/1‑28 (MQ=255)

                                                                                                          gTAGCTTGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatga                             >  2:78108‑M1/1‑28 (MQ=255)

                                                                                                               ttGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTgtggt                        <  1:2052248/136‑1 (MQ=255)

                                                                                                               ttGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTgtggt                        <  1:2265402/136‑1 (MQ=255)

                                                                                                                tGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagatta                       >  1:2730460‑M1/1‑22 (MQ=255)

                                                                                                                tGGCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtac                                                        <  2:2526938‑M1/103‑82 (MQ=255)

                                                                                                                tGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTgtggtg                       <  1:1130812/136‑1 (MQ=255)

                                                                                                                 gtctaGCAGCTGAAGAAGTAGcagcagaactagtatcttggatagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtcgtagtaccattgacttcaagattatcaccaatgaagattaa                      <  2:445087‑M1/134‑116 (MQ=255)

                                                                                                                 ggCTAGCAGCTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagattaa                      >  1:1586589‑M1/1‑21 (MQ=255)

                                                                                                                 ggCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTgc                      >  1:736674/1‑136 (MQ=255)

                                                                                                                 ggCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTgc                      >  2:658969/1‑136 (MQ=255)

                                                                                                                 ggCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTgc                      >  1:778246/1‑136 (MQ=255)

                                                                                                                 ggCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTgc                      >  1:823223/1‑136 (MQ=255)

                                                                                                                 ggCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGAACTCGTTGCAGTTGAAGCAGCTGAAGAATTAGCTTGGCTAGTTGCTGATTGTGGTgc                      >  1:1099603/1‑136 (MQ=255)

                                                                                                                          cTGAAGAAGTAGcagcagaactagtagcttggctagttgctgattgtggtgcagcacttgtagcagcagaagtcgtggttgttgtagtagtaccattgacttcaagcttatcaccaatgaagattaagttaacatt             >  1:585734‑M1/1‑12 (MQ=255)

                                                                                                                          cTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTgaaga                                                                                                 <  2:2009851/52‑1 (MQ=255)

                                                                                                                          cTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTgaaga                                                                                                 >  1:2009851/1‑52 (MQ=255)

                                                                                                                          cTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTgtggt                        <  1:2574632/125‑1 (MQ=255)

                                                                                                                           tGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGt             <  1:1488342/135‑1 (MQ=255)

                                                                                                                              agaagTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTagca         <  1:1779996/136‑1 (MQ=255)

                                                                                                                                 agtagtAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTagcagc       <  1:1986905/135‑1 (MQ=255)

                                                                                                                                     gtagCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAg  >  2:207031/1‑136 (MQ=255)

AGCACTTGATGAAGCTTGACTAGTGGTTGCAGCAGAACTTGAAGCTTGGCTAGCAGCTGATTGCGTTGAGCTTGCTGAAGAAGCAGCACTCGTTGCAACACTTGAAGTAGCTTGGCTAGCAGCTGAAGAAGTAGTAGCAGAACTAGTAGCTTGGCTAGCAACTGATTGTGAAGAAGCACTAGTAGCACTGGCACTCGTTGCAGTTGAAGCAGCTGAAGAAGTAGCTTGGCTAGTTGCTGATTGTGGTGCAGCACTTGTAGCAGCAGAAG  >  TrimmedAssembly_T66_contig_3/176108‑176376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.