New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? TrimmedAssembly_T66_contig_17 66634 =105 (0.570)131 (0.630) 48/260 1.4 71.4% intergenic (+348/–) rasttk_feature_annotation_tool=elepa@bvbrc/– hypothetical protein/–
?TrimmedAssembly_T66_contig_5 1 = 0 (0.000)intergenic (–/+439) –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 –/hypothetical protein

Only 100 of 131 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTGCGACAACAGAAACTATCTTACC  >  TrimmedAssembly_T66_contig_5/1‑129
                                                                                                          |                                                                                                                                
ttgctagcgaattgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAatca                                                                                                     >  1:1540388‑M2/107‑136 (MQ=255)
 tgctagcgaattgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAatcat                                                                                                    <  1:1496232‑M2/31‑1 (MQ=255)
  gctagcgaattgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAatcatc                                                                                                   <  1:999380‑M2/32‑1 (MQ=255)
  gctagcgaattgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAatcatc                                                                                                   <  2:1945922‑M2/32‑1 (MQ=255)
    tagcgaattgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAAtcatca                                                                                                  <  1:2214419‑M2/33‑1 (MQ=255)
     agcgaattgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATa                                                                                                >  1:994914‑M2/102‑136 (MQ=255)
        gaattgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctgattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACa                                                                                             <  1:2278527‑M2/38‑1 (MQ=255)
        gaattgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAAc                                                                                              <  2:1445654‑M2/37‑1 (MQ=255)
        gaattgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAAc                                                                                              <  1:2670939‑M2/37‑1 (MQ=255)
        gaattgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACa                                                                                             >  1:1053455‑M2/99‑136 (MQ=255)
        gaattgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACa                                                                                             <  2:1777292‑M2/38‑1 (MQ=255)
        gaattgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACa                                                                                             <  2:1820708‑M2/38‑1 (MQ=255)
        gaattgaattcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACa                                                                                             <  2:428989‑M2/38‑1 (MQ=255)
          attgacttcgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACAt                                                                                            <  1:1488127‑M2/39‑1 (MQ=255)
                  cgcaaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCaa                                                                                   <  2:2763489‑M2/48‑1 (MQ=255)
                    caaatgttttgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAata                                                                                 >  2:824925‑M2/87‑136 (MQ=255)
                             tgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTca                                                                         >  1:778151‑M2/78‑135 (MQ=255)
                             tgctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTca                                                                         >  2:4934‑M2/78‑135 (MQ=255)
                               ctcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCATTATCTTGTcaaca                                                                      >  2:1561082‑M2/76‑136 (MQ=255)
                                tcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTcaaca                                                                      >  2:1881564‑M2/75‑135 (MQ=255)
                                tcttgattcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTcaaca                                                                      >  1:1818568‑M2/75‑135 (MQ=255)
                                     attcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAat                                                                                  <  2:667320‑M2/49‑1 (MQ=255)
                                     attcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAat                                                                                  >  1:667320‑M2/70‑118 (MQ=255)
                                     attcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACtttt                                                                >  1:1572144‑M2/70‑136 (MQ=255)
                                      ttcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAatcatc                                                                                                   <  1:778919‑M2/32‑1 (MQ=255)
                                      ttcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAatcatc                                                                                                   >  2:778919‑M2/69‑100 (MQ=255)
                                      ttcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACttttt                                                               >  2:1494849‑M2/69‑136 (MQ=255)
                                      atcaaaataaagagaccctacacatttgattcgtcgaaaatttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACtttt                                                                <  1:2422923‑M2/67‑1 (MQ=255)
                                       tcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACtttttt                                                              >  1:1082143‑M2/68‑136 (MQ=255)
                                       tcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACtttttt                                                              >  1:1082144‑M2/68‑136 (MQ=255)
                                       tcaaaatcaagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACtttttt                                                              >  2:269160‑M2/68‑136 (MQ=255)
                                              caagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTaagaag                                                       <  2:1428316‑M2/76‑1 (MQ=255)
                                              caagagaccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTaagaag                                                       <  1:1352139‑M2/76‑1 (MQ=255)
                                                     ccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTACTCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACt                                                  <  1:471024‑M2/81‑1 (MQ=255)
                                                     ccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACtt                                                 <  2:2679273‑M2/82‑1 (MQ=255)
                                                     ccctacacatttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACt                                                  <  1:502729‑M2/81‑1 (MQ=255)
                                                            catttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATc                                                                                                                        >  1:2465242‑M2/47‑57 (MQ=255)
                                                            catttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATc                                                                                                                        <  2:2465242‑M2/11‑1 (MQ=255)
                                                            catttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCCTCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAAtt                                         <  2:298297‑M2/90‑1 (MQ=255)
                                                            catttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAAtt                                         <  1:1604882‑M2/90‑1 (MQ=255)
                                                            catttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAAtt                                         <  2:298278‑M2/90‑1 (MQ=255)
                                                            catttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAAtt                                         >  2:2351481‑M2/47‑136 (MQ=255)
                                                            catttgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAAtt                                         >  1:1812720‑M2/47‑136 (MQ=255)
                                                                tgattcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAATAAGTAAATTGATTAATTTGTc                                     >  1:1083248‑M2/43‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGACGTAACTTGATTAATTTGTCGt                                   >  2:1054212‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  2:810959‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  1:1041191‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  1:237511‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  1:1860524‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  2:1149545‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  2:1693877‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  2:1770398‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  1:976366‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  2:669258‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  1:2672827‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  1:874595‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  1:1361699‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  1:1433802‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  1:559637‑M2/41‑136 (MQ=255)
                                                                  attcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGt                                   >  2:664741‑M2/41‑136 (MQ=255)
                                                                   ttcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACTACTTAATCATCATAACATCTTAATCAATATCTTTTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTg                                  >  2:1325979‑M2/40‑136 (MQ=255)
                                                                   ttcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTg                                  >  1:971109‑M2/40‑136 (MQ=255)
                                                                   ttcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTg                                  >  2:1968234‑M2/40‑136 (MQ=255)
                                                                   ttcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTg                                  >  1:100911‑M2/40‑136 (MQ=255)
                                                                   ttcgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGAGTAATTTGTCGTg                                  >  2:539892‑M2/40‑136 (MQ=255)
                                                                     cgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGt                                >  2:934476‑M2/38‑136 (MQ=255)
                                                                     cgtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGt                                >  1:1821604‑M2/38‑136 (MQ=255)
                                                                      gtcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGtt                               <  1:2035754‑M2/100‑1 (MQ=255)
                                                                      gtcgaaacgttgttcagttttcaaagatctaattccATGCGTTACGCGCTTAACACAACTTAATCATCAGAACCTCTGAATCAATATCTTGTCAACAACGTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGtt                               <  2:194392‑M2/100‑1 (MQ=255)
                                                                       tcgaaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGtt                               >  1:2211839‑M2/36‑135 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAAc                                                                                              <  1:1149165‑M2/37‑1 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAAc                                                                                              >  2:1149165‑M2/33‑69 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTGAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTtgcag                           >  2:1084015‑M2/33‑134 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACtttt                                                                <  1:89490‑M2/67‑1 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACtttt                                                                >  2:89490‑M2/33‑99 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAATTAACTTGATTAATTTGTCGTGGTTGCCg                           >  1:1753592‑M2/33‑136 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTtgcag                           >  2:2308860‑M2/33‑134 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCg                           >  2:1818519‑M2/33‑136 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCg                           >  1:680907‑M2/33‑136 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCg                           >  2:2430396‑M2/33‑136 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCg                           >  1:732599‑M2/33‑136 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCg                           >  1:759192‑M2/33‑136 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCg                           >  1:866804‑M2/33‑136 (MQ=255)
                                                                          aaactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAAGCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCg                           >  1:344845‑M2/33‑136 (MQ=255)
                                                                           aactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGt                          <  2:930232‑M2/105‑1 (MQ=255)
                                                                           aactttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGt                          <  2:1224450‑M2/105‑1 (MQ=255)
                                                                            actttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGtt                         <  1:2010270‑M2/106‑1 (MQ=255)
                                                                             ctttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTg                        <  1:657007‑M2/107‑1 (MQ=255)
                                                                             ctttgttcagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTg                        <  2:2243479‑M2/107‑1 (MQ=255)
                                                                                    cagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTGCGacaac                 <  2:613876‑M2/114‑1 (MQ=255)
                                                                                    cagttttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTGCGacaac                 <  2:2081305‑M2/114‑1 (MQ=255)
                                                                                        tttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTGCGACAACAg               <  1:1318375‑M2/116‑1 (MQ=255)
                                                                                        tttcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTGCGACAACAg               <  1:106378‑M2/116‑1 (MQ=255)
                                                                                        tttcaaagatctaattccATGCGTTAATCGATTAACACAACTTAATCATCATAACATATTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTATCTTGATTAATTTGTCGTGGTTGCCGTTGCGacaaca                <  2:530313‑M2/115‑1 (MQ=255)
                                                                                          tcaaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTGCGACAACAGaa             >  1:1623773‑M2/17‑134 (MQ=255)
                                                                                           caaagatctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTGCGACAACAGAAACt          <  2:2211839‑M2/121‑1 (MQ=255)
                                                                                                 tctaattccATGCGTTAATCGCTTAACACAACTTAatcat                                                                                                    <  1:796766‑M2/31‑1 (MQ=255)
                                                                                                 tctaattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTGCGACAACAGAAACTATCTTa    <  1:1181069‑M2/127‑1 (MQ=255)
                                                                                                   taattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTGCGACAACAGAAACTATCTTAcc  <  1:1098698‑M2/129‑1 (MQ=255)
                                                                                                   taattccATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTGCGACAACAGAAACTATCTTAcc  <  2:1540388‑M2/129‑1 (MQ=255)
                                                                                                          |                                                                                                                                
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGCGTTAATCGCTTAACACAACTTAATCATCATAACATCTTAATCAATATCTTGTCAACAACTTTTTTTAAGAAGTAACTTGATTAATTTGTCGTGGTTGCCGTTGCGACAACAGAAACTATCTTACC  >  TrimmedAssembly_T66_contig_5/1‑129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.