| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_22 | 1 = | 0 (0.000) | 173 (0.520) | 62/260 | 0.3 | 100% | coding (1/168 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_41 | = 437 | 0 (0.000) | coding (435/435 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
Only 100 of 457 total aligned reads displayed.
GAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_41/302‑437 | gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAGCGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 1:1855924/1‑136 (MQ=255)gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 2:1292148/1‑136 (MQ=255)gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 1:2459309/1‑136 (MQ=255)gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 1:125120/1‑136 (MQ=255)gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 2:2406449/1‑136 (MQ=255)gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 1:2260492/1‑136 (MQ=255)gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 1:1891038/1‑136 (MQ=255)gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 2:2605551/1‑136 (MQ=255)gAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 2:2098010/1‑136 (MQ=255)gAATGTCCACCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 2:1758937/1‑136 (MQ=255)gAATGTCCACCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 1:1660216/1‑136 (MQ=255) aaTGTCCGCCAGCACCGAGTGAGCGAAAATCGTGCGAAATTAACAAGTGGGACTACCATCGAACAACGGCCAACAACTGTTAATCAACGGGTAGCATTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAa < 2:348600‑M2/136‑2 (MQ=255) aaTGTCCACCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa < 2:1108754/135‑1 (MQ=255) gTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtg > 1:1949100‑M2/1‑132 (MQ=255) tCCGCCAGCACCGAGTGAGCGAAAATCGGGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtga < 2:853229‑M2/136‑6 (MQ=255) tCCACCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtga < 2:671837‑M2/136‑6 (MQ=255) cAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcac > 1:2630933‑M2/1‑126 (MQ=255) cAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcac > 2:1956122‑M2/1‑126 (MQ=255) cAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcac < 1:965941‑M2/136‑11 (MQ=255) cAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcac > 1:1301161‑M2/1‑126 (MQ=255) ccGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatca > 2:1496954‑M2/1‑121 (MQ=255) aGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatg < 2:2336950‑M2/135‑18 (MQ=255) aGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatg < 2:2360850‑M2/135‑18 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctg < 2:1448892‑M2/136‑22 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctg < 1:571088‑M2/136‑22 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctg < 1:935701‑M2/136‑22 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctg < 1:24045‑M2/136‑22 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtct > 2:2260492‑M2/1‑115 (MQ=255) gAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtct > 1:1403455‑M2/1‑115 (MQ=255) gAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggtt < 2:1040255‑M2/135‑25 (MQ=255) gAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggtt < 1:704194‑M2/135‑25 (MQ=255) aaaaTCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGa > 1:250875/1‑110 (MQ=255) aaaaTCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttac < 2:2438775‑M2/136‑27 (MQ=255) cGTGGGAATTTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcg > 2:1688860‑M2/1‑105 (MQ=255) cGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcg > 2:1831233‑M2/1‑105 (MQ=255) cGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcg > 2:58018‑M2/1‑105 (MQ=255) cGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcg > 2:186539‑M2/1‑105 (MQ=255) cGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcg > 1:304352‑M2/1‑105 (MQ=255) cGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcg > 2:2505480‑M2/1‑105 (MQ=255) cGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcg > 1:440373‑M2/1‑105 (MQ=255) aaaTTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaa > 2:437595‑M2/1‑99 (MQ=255) aaaTTTACAAGTGGGACTTCCATAGAACAACGGCCAACAACTGTTAATCAACGGTTAGATTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaa > 1:2706886‑M2/1‑99 (MQ=255) aaGTGGGACTTCCTTCGAACACCGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacc > 2:2670238‑M2/1‑91 (MQ=255) aaGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacc > 1:2793074‑M2/1‑91 (MQ=255) cTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttct < 1:260597‑M2/136‑54 (MQ=255) cTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttct < 2:694522‑M2/136‑54 (MQ=255) cTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttct < 1:1576420‑M2/136‑54 (MQ=255) ttCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttcta > 2:1518975‑M2/1‑82 (MQ=255) tCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctat > 1:834413‑M2/1‑81 (MQ=255) acaacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatc > 1:1145668‑M2/1‑73 (MQ=255) acaacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatc > 1:796021‑M2/1‑73 (MQ=255) aacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaa < 2:611147‑M2/136‑66 (MQ=255) aacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaa < 2:80612‑M2/136‑66 (MQ=255) aacGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaa < 2:1780193‑M2/136‑66 (MQ=255) acGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaa > 2:949549‑M2/1‑70 (MQ=255) cGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaa < 2:21973‑M2/135‑67 (MQ=255) ccAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatttctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcc < 2:405864‑M2/135‑70 (MQ=255) ccAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcc < 1:91378‑M2/135‑70 (MQ=255) ccAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcc < 2:1600317‑M2/135‑70 (MQ=255) ccAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcc > 1:2006030‑M2/1‑66 (MQ=255) aacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaat < 2:732402‑M2/136‑76 (MQ=255) aacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaat > 1:1743688‑M2/1‑61 (MQ=255) aacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaat > 1:2439627‑M2/1‑61 (MQ=255) aacTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaat > 2:326866‑M2/1‑61 (MQ=255) acTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaacc > 1:694522‑M2/1‑60 (MQ=255) acTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaacc > 1:1345901‑M2/1‑60 (MQ=255) acTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaacc > 2:2712432‑M2/1‑60 (MQ=255) aaTCTACGGTTTGCTTTTGGTCTTTGGGAAGTTGATACGGTGCTTTCTAGTCGAggtgagtctcgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgatctg > 2:254342‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 2:1233185‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactg > 1:2336950‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaact < 2:118889‑M2/135‑82 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 1:2764089‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 2:2063406‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 1:1775157‑M2/1‑54 (MQ=255) aaTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacgg > 1:153355‑M2/1‑54 (MQ=255) aTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacg < 2:890880‑M2/134‑82 (MQ=255) aTCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacg < 1:1002523‑M2/134‑82 (MQ=255) ttAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggcct < 1:238444‑M2/136‑92 (MQ=255) ttAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggcct < 2:1894874‑M2/136‑92 (MQ=255) ttAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggc < 1:2126850‑M2/134‑90 (MQ=255) ttAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatc > 1:1189941‑M2/1‑45 (MQ=255) ttAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttct > 2:2743707‑M2/1‑45 (MQ=255) aGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggcctta < 1:1475044‑M2/136‑94 (MQ=255) ttttGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaa > 1:348600‑M2/1‑40 (MQ=255) ttttGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaa > 2:1981622‑M2/1‑40 (MQ=255) tCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaata < 1:2214859‑M2/131‑98 (MQ=255) tCATTGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccg < 2:2146008‑M2/134‑101 (MQ=255) ttGTGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgccttt > 2:916224‑M2/1‑31 (MQ=255) ttGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgccttt > 1:611147‑M2/1‑31 (MQ=255) ttGGGAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgccttt > 2:471845‑M2/1‑31 (MQ=255) ttGGGAAGTAGATACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtatgacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgccttt > 2:1647819‑M2/1‑31 (MQ=255) ggAAGTAGATACGGTGCTTTCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaagcccctaaccgaactgccaaggccttaaatagcgcctttgaa < 1:2070436‑M2/136‑109 (MQ=255) tACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatg > 1:11124‑M2/1‑19 (MQ=255) tACGGTGCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatg > 2:2459309‑M2/1‑19 (MQ=255) gCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatggggg < 1:28280‑M2/134‑122 (MQ=255) gCTTTCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatggggg < 1:2561436‑M2/134‑122 (MQ=255) ttCTAGTCGAggtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggccatcaaa > 2:2847036‑M2/1‑10 (MQ=255) ttCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatgggggccttc < 2:1014519‑M2/136‑127 (MQ=255) ttCTAGTCGAagtgagtcacgatcatgtctggttacattcgtagaacgtaagacccgacttctatgggctatcaaagcccctaatagaacggctaaggctctaaacaccgcctttggcaagtttatgggggccttc < 2:2621164‑M2/136‑127 (MQ=255) ttCTAGTCGAagtgagtcacgatcatgtctggttacat < 1:2650204‑M2/38‑29 (MQ=255) | GAATGTCCGCCAGCACCGAGTGAGCGAAAATCGTGGGAAATTTACAAGTGGGACTTCCATCGAACAACGGCCAACAACTGTTAATCAACGGTTAGCTTTTGGTCATTGGGAAGTAGATACGGTGCTTTCTAGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_41/302‑437 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |