| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | TrimmedAssembly_T66_contig_1 | 88,020 | G→A | A159A (GCC→GCT) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 ← | Transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | TrimmedAssembly_T66_contig_1 | 88,020 | 0 | G | A | 98.9% | 219.3 / NA | 94 | A159A (GCC→GCT) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Transposase |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (48/45); total (49/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATGGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAAC > TrimmedAssembly_T66_contig_1/87888‑88097 | tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 2:2126589/1‑136 (MQ=21)tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 2:226437/1‑136 (MQ=21)tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 2:2446059/1‑136 (MQ=21)tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 1:1584562/1‑136 (MQ=21)tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 2:1272608/1‑136 (MQ=21)tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGc < 1:1810848/135‑1 (MQ=21)tGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTACTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCGTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGcc > 2:1653459/1‑136 (MQ=255) gATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCg < 2:1516253/136‑1 (MQ=21) gATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGATTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCg < 1:269214/136‑1 (MQ=21) ccGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCata > 2:817516/1‑136 (MQ=21) ccGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCata > 1:2020211/1‑136 (MQ=21) gTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATAtt > 1:1621061/1‑136 (MQ=21) gTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATAtt > 1:2307502/1‑136 (MQ=21) gTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATAtt > 2:765087/1‑136 (MQ=21) tCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTATAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCAAATtg > 1:1078137/1‑136 (MQ=255) cGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATtg < 1:1567520/135‑1 (MQ=18) cGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATtg < 2:2667880/135‑1 (MQ=18) ggCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCAGATtgtg > 2:2031229/1‑136 (MQ=17) gcgcTACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATTCCAATCGCAATATGAACCGCATCGTTTTGAACGGTATCCCGCGTTAACGGCAAGTAAGTGGCATCTAAGAAGATGGCCGCATATTGTGa > 2:1241508/1‑136 (MQ=11) gcgcCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGa > 2:1063357/1‑136 (MQ=17) gcgcCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGa > 1:2277020/1‑136 (MQ=17) gcgcCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGa > 2:1613954/1‑136 (MQ=17) cgcCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGaa > 2:1829592/1‑136 (MQ=17) cACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTACGAAGATAGCCGCATATTGTGAAGcc < 1:2018095/136‑1 (MQ=17) ggTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCg < 2:2650133/136‑1 (MQ=17) cAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGc < 2:772022/136‑1 (MQ=17) aGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGtt > 2:565309/1‑133 (MQ=17) cACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTgg > 1:2736412/1‑136 (MQ=17) cACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTgg > 2:2727070/1‑136 (MQ=17) aCTTCTTTCGTCCCATCAGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 2:2235786/133‑1 (MQ=12) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 2:710903/133‑1 (MQ=17) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 1:1697167/133‑1 (MQ=17) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 2:58723/133‑1 (MQ=17) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 1:276427/133‑1 (MQ=17) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 2:250103/133‑1 (MQ=17) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 2:1037304/133‑1 (MQ=17) aCTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 1:2256641/133‑1 (MQ=17) aCTTCTTTCGGACCATCTGGACGAATGCCAATCGCAATATGCACCGCTTCTTTTTGAACGGTATCCCGCTTTTACGGCTAGTAAGTGGCATCTATGAAGCTAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 2:1793521/133‑1 (MQ=11) ttcttTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGaaa > 2:533100/1‑136 (MQ=17) ttcttTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGaaa > 2:154240/1‑136 (MQ=17) ttcttTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGaaa > 1:547644/1‑136 (MQ=17) ttcttTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGaaa > 1:2824370/1‑136 (MQ=17) ttctcTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGaaa > 1:1759346/1‑136 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCCGTCGACGTTGCTGGAAAGCTTg > 1:206281/1‑136 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt > 1:1528003/1‑126 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCt < 2:1528003/126‑1 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGaaa > 2:1989196/1‑131 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGaaa < 1:1989196/131‑1 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg < 2:360207/136‑1 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg < 2:360206/136‑1 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg > 1:2503648/1‑136 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg < 2:1325828/136‑1 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg > 1:485164/1‑136 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg < 1:2616009/136‑1 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTg > 2:1470956/1‑136 (MQ=17) tCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCGGGAAAGCTTg > 2:1325532/1‑136 (MQ=17) tACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGaa > 1:1295386/1‑135 (MQ=17) tGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATAGTGTGAAGCCCGTCGACGTTGCTGGAAAGCTTGAACCTGTTCa > 2:792857/1‑136 (MQ=12) ggACGAATGCCAATCGCAATCTGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 2:34886/136‑1 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 1:1218625/136‑1 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 2:193771/136‑1 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt > 2:2104768/1‑136 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 1:983574/136‑1 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 2:2711826/136‑1 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt > 1:793587/1‑136 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt > 2:765337/1‑136 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt < 1:76322/136‑1 (MQ=17) ggACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAt > 1:1284405/1‑136 (MQ=17) aCGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCAtt < 2:1346624/135‑1 (MQ=17) gCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCCGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCt > 2:1221342/1‑136 (MQ=17) cAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCttt > 2:1127658/1‑136 (MQ=17) cAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCttt > 1:537654/1‑136 (MQ=17) cAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCttt > 2:1565475/1‑136 (MQ=17) cAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCtt < 2:381826/135‑1 (MQ=17) cAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGAAAGCCGCATAGTGTGAAGCCAGTCGACGTTGCTGGAAATCTTGAACCTGTTCATTGACGGCttt > 2:1440233/1‑136 (MQ=255) aaTCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTa < 1:613123/136‑1 (MQ=17) aaTCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTa < 1:320220/136‑1 (MQ=17) aaTCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTa < 1:429302/136‑1 (MQ=17) aaTCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTa < 2:2302365/136‑1 (MQ=17) aaTCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTa < 1:980060/136‑1 (MQ=17) aTCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAg > 2:373394/1‑136 (MQ=17) cGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTc > 2:2195511/1‑136 (MQ=17) cGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTc > 1:1389002/1‑136 (MQ=17) cGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTc > 2:572554/1‑136 (MQ=17) gCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCa > 1:1892883/1‑136 (MQ=17) aCCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGaaa < 2:1540682/136‑1 (MQ=17) aCCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGaaa < 1:2254303/136‑1 (MQ=17) aCCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGaaa < 1:1014871/136‑1 (MQ=17) ccGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAAc < 1:2111345/136‑1 (MQ=14) ccGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAAc < 1:2126589/136‑1 (MQ=14) ccGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAAc < 2:366073/136‑1 (MQ=14) ccGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAAc < 1:226437/136‑1 (MQ=14) ccGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAAc < 2:990432/136‑1 (MQ=14) ccGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATAGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGGTCATTGACGGCTTTAGTCATGTTGGAAAc < 2:547644/136‑1 (MQ=14) | TGATTCCGTCGGCGCCACTTGGTAGTTCAGCACTTCTTTCGTACCATCTGGACGAATGCCAATCGCAATATGAACCGCTTCTTTTTGAACGGTATCCCGCTTTAACGGCAAGTAAGTGGCATCTAAGAAGATGGCCGCATATTGTGAAGCCAGTCGACGTTGCTGGAAAGCTTGAACCTGTTCATTGACGGCTTTAGTCATGTTGGAAAC > TrimmedAssembly_T66_contig_1/87888‑88097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |