New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Annotation_U21_Trimmed_contig_1 1 =0 (0.000)185 (0.580) 69/260 1.0 100% coding (1/567 nt) rasttk_feature_annotation_tool=annotate_proteins_km er_v2 hypothetical protein
?Annotation_U21_Trimmed_contig_8 1 = 0 (0.000)coding (588/588 nt) rasttk_feature_annotation_tool=annotate_proteins_km er_v2 hypothetical protein

Only 100 of 187 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAACTTGTTG  >  Annotation_U21_Trimmed_contig_8/1‑135
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gcagctgaactagtatgtgtagcatatgaaggagttgtagcagcgcttgatggtgctacactagttacagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactt                                                                                                                                        >  1:1670271‑M2/135‑135 (MQ=255)
   gctgaactagtatgtgtagcatatgaaggagttgtagcagcgcttgatggtgctacactagttacagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTgg                                                                                                                                      <  1:484603‑M2/3‑1 (MQ=255)
      gaactagtatgtgtagcatatgaaggagttgtagcagcgcttgatggtgctacactagttacagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCt                                                                                                                                  <  2:2631534‑M2/7‑1 (MQ=255)
      gaactagtatgtgtagcatatgaaggagttgtagcagcgcttgatggtgctacactagttacagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCt                                                                                                                                  <  2:2564974‑M2/7‑1 (MQ=255)
       aactagtatgtgtagcatatgaaggagttgtagcagcgcttgatggtgctacactagttacagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTa                                                                                                                                 <  1:2713785‑M2/8‑1 (MQ=255)
            gtatgtgtagcatatgaaggagttgtagcagcgcttgatggtgctacactagttacagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTa                                                                                                                            <  1:93806‑M2/13‑1 (MQ=255)
               tgtgtagcatatgaaggagttgtagcagcgcttgatggtgctacactagttacagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGt                                                                                                                          <  2:2352137‑M2/15‑1 (MQ=255)
               tgtgtagcatatgaaggagttgtagcagcgcttgatggtgctacactagttacagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGt                                                                                                                          <  1:2111320‑M2/15‑1 (MQ=255)
                                                        tacactagttacagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCt                                                                                                                                  >  2:807892‑M2/79‑85 (MQ=255)
                                                                  acagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCt                                                                                                                                  >  2:181652‑M2/69‑75 (MQ=255)
                                                                  acagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAg                                                                                                                           <  2:174107‑M2/14‑1 (MQ=255)
                                                                  acagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAg                                                                                                                           >  1:174107‑M2/69‑82 (MQ=255)
                                                                  acagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGt                                                                                                                          <  2:1777630‑M2/15‑1 (MQ=255)
                                                                  acagcttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTTCAGCTtg                                                                                                                 <  1:2135690‑M2/24‑1 (MQ=255)
                                                                       ttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTtg                                                                                                                 <  1:2291849‑M2/24‑1 (MQ=255)
                                                                       ttgtgatgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTtg                                                                                                                 >  2:2291849‑M2/64‑87 (MQ=255)
                                                                            atgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTg                                                                                                                                       <  2:1136901‑M2/2‑1 (MQ=255)
                                                                            atgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTg                                                                                                                                       >  1:1136901‑M2/59‑60 (MQ=255)
                                                                            atgttaccgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAg                                                                                                                           >  2:1576235‑M2/59‑72 (MQ=255)
                                                                                   cgcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTGCAGCTTGTGATGTTACTGCACTGCTTGCTGGTGCTACATATCTTGAAGCTGCTCTACAtggtgactg                                                     >  2:1532291‑M2/52‑131 (MQ=255)
                                                                                    gcactacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGgt                                                    >  2:1699852‑M2/51‑135 (MQ=255)
                                                                                      actacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATAtgttg                                                                           <  2:2073099‑M2/62‑1 (MQ=255)
                                                                                       ctacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATAtgt                                                                             <  2:1227806‑M2/60‑1 (MQ=255)
                                                                                       ctacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGgtgt                                                  >  1:2452398‑M2/48‑134 (MQ=255)
                                                                                       ctacttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGtt                                                 <  1:1410470‑M2/88‑1 (MQ=255)
                                                                                          cttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTtac                                               >  1:447193‑M2/45‑134 (MQ=255)
                                                                                           ttgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCt                                                                                     >  2:1978062‑M2/44‑95 (MQ=255)
                                                                                            tgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTtg                                                                                                                 >  2:2340928‑M2/43‑66 (MQ=255)
                                                                                            tgatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTtg                                                                                                                 <  1:2340928‑M2/24‑1 (MQ=255)
                                                                                             gatggtgcaactgagcttgcagctgatgatacagctgaactTGGt                                                                                                                                     >  2:1595969‑M2/42‑45 (MQ=255)
                                                                                             gatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCt                                                                                                                                  >  1:358355‑M2/42‑48 (MQ=255)
                                                                                             gatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACATCTTGTGATGTTACTGCACTGCATGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACa                                           >  1:2603977‑M2/42‑135 (MQ=255)
                                                                                             gatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGa                                                                                                              >  2:467434‑M2/42‑68 (MQ=255)
                                                                                             gatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGa                                                                                                              <  1:467434‑M2/27‑1 (MQ=255)
                                                                                             gatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTag                                                                        >  1:623780‑M2/42‑106 (MQ=255)
                                                                                             gatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACa                                           >  1:1026085‑M2/42‑135 (MQ=255)
                                                                                             gatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACa                                           >  2:1321957‑M2/42‑135 (MQ=255)
                                                                                             gatggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACa                                           >  2:7244‑M2/42‑135 (MQ=255)
                                                                                                ggtgcaactgagctttcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGt                                         <  1:2489608‑M2/96‑1 (MQ=255)
                                                                                                ggtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGt                                         <  1:31638‑M2/96‑1 (MQ=255)
                                                                                                 gtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGttt                                       <  1:1321957‑M2/98‑1 (MQ=255)
                                                                                                 gtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGttt                                       <  1:421305‑M2/98‑1 (MQ=255)
                                                                                                 gtgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGttt                                       <  1:1836021‑M2/98‑1 (MQ=255)
                                                                                                  tgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTATTTACAGCTTGTGATGTTACTCCACTGCTTGCATGTGCTACATATGTTGTAGCAGCACTCCTTGGTGCAGGTGTTACTACagttag                                      >  1:1233027‑M2/37‑133 (MQ=255)
                                                                                                  tgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTa                                                                                                         <  1:2513522‑M2/32‑1 (MQ=255)
                                                                                                  tgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTa                                                                                                         >  2:2513522‑M2/37‑68 (MQ=255)
                                                                                                  tgcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTg                                      >  1:2306447‑M2/37‑135 (MQ=255)
                                                                                                   gcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCa                                                                                           <  2:120781‑M2/46‑1 (MQ=255)
                                                                                                   gcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCa                                                                                           >  1:120781‑M2/36‑81 (MQ=255)
                                                                                                   gcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTg                                      >  1:1700930‑M2/36‑134 (MQ=255)
                                                                                                   gcaactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTg                                      >  1:58445‑M2/36‑134 (MQ=255)
                                                                                                    caactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGag                                    <  1:2043061‑M2/101‑1 (MQ=255)
                                                                                                    caactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGag                                    <  2:2219988‑M2/101‑1 (MQ=255)
                                                                                                     aactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCt                                                                                     >  2:371050‑M2/34‑85 (MQ=255)
                                                                                                     aactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATAtgttg                                                                           >  2:571053‑M2/34‑95 (MQ=255)
                                                                                                     aactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGagc                                   >  1:1197038‑M2/34‑135 (MQ=255)
                                                                                                     aactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGagc                                   >  1:1626773‑M2/34‑135 (MQ=255)
                                                                                                     aactgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGagc                                   >  1:1980465‑M2/34‑135 (MQ=255)
                                                                                                       ctgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGt                                                                                                                          >  1:1693360‑M2/32‑46 (MQ=255)
                                                                                                       ctgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTact                                                                                                       >  2:846094‑M2/32‑65 (MQ=255)
                                                                                                       ctgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTact                                                                                                       <  1:846094‑M2/34‑1 (MQ=255)
                                                                                                       ctgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGagcag                                 <  1:876257‑M2/104‑1 (MQ=255)
                                                                                                       ctgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGagcag                                 <  2:2189645‑M2/104‑1 (MQ=255)
                                                                                                       ctgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGagc                                   >  1:106918‑M2/32‑133 (MQ=255)
                                                                                                       ctgagcttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGagc                                   >  2:2689473‑M2/32‑133 (MQ=255)
                                                                                                        tgagcttgcagctgatgatacagctgaactTGGTGc                                                                                                                                   >  1:1965051‑M2/31‑36 (MQ=255)
                                                                                                             ttgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCac                           >  1:2606429‑M2/26‑135 (MQ=255)
                                                                                                              tgcagctgatgatacagctgaactTGGTGCTACGCTAGTTTCAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCa                            <  2:211818‑M2/109‑1 (MQ=255)
                                                                                                              tgcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCa                            <  1:1819992‑M2/109‑1 (MQ=255)
                                                                                                               gcagctgatgatacagctgaactTGGTGCTACGCTAg                                                                                                                           >  2:2045442‑M2/24‑37 (MQ=255)
                                                                                                               gcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTact                                                                                                       <  2:2746029‑M2/34‑1 (MQ=255)
                                                                                                               gcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCt                                                                                               >  2:1803456‑M2/24‑65 (MQ=255)
                                                                                                               gcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCt                                                                                               <  1:1803456‑M2/42‑1 (MQ=255)
                                                                                                               gcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCa                                                                                           <  1:1588362‑M2/46‑1 (MQ=255)
                                                                                                               gcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCac                           >  2:1966985‑M2/24‑133 (MQ=255)
                                                                                                               gcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCac                           >  2:1023473‑M2/24‑133 (MQ=255)
                                                                                                               gcagctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCac                           >  1:806639‑M2/24‑133 (MQ=255)
                                                                                                                  gctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCactact                       <  1:1524958‑M2/114‑1 (MQ=255)
                                                                                                                  gctgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGATTGAGCAGCTGCactact                       <  1:138266‑M2/114‑1 (MQ=255)
                                                                                                                    tgatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTActtgc                    >  1:2616154‑M2/19‑135 (MQ=255)
                                                                                                                     gatgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTActt                      <  1:2564495‑M2/115‑1 (MQ=255)
                                                                                                                      atgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTActtgctt                  <  2:1867236‑M2/119‑1 (MQ=255)
                                                                                                                      atgatacagctgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTActtgctt                  <  1:56787‑M2/119‑1 (MQ=255)
                                                                                                                        gatacagctgatctTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGa                <  1:1699753‑M2/121‑1 (MQ=255)
                                                                                                                                tgaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAAc        >  1:960217‑M2/7‑135 (MQ=255)
                                                                                                                                 gacctTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTGGTTGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCTCTACTTGCTTGAACTGt           <  2:703509‑M2/126‑1 (MQ=255)
                                                                                                                                 gaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGt           <  1:883835‑M2/126‑1 (MQ=255)
                                                                                                                                 gaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGt           <  2:1994753‑M2/126‑1 (MQ=255)
                                                                                                                                 gaactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAAc        <  1:2026153‑M2/129‑1 (MQ=255)
                                                                                                                                  aactTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAACtt      >  1:764552‑M2/5‑135 (MQ=255)
                                                                                                                                    ctTGGTGCTACGCTAGTTTCAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAACttgt    <  2:976616‑M2/133‑1 (MQ=255)
                                                                                                                                    ctTGGTGCTACGCTAGTTTCAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAACttgt    <  1:2218538‑M2/133‑1 (MQ=255)
                                                                                                                                    ctTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAACttgt    <  1:207968‑M2/133‑1 (MQ=255)
                                                                                                                                    ctTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAACttgt    <  1:2566694‑M2/133‑1 (MQ=255)
                                                                                                                                     tTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAACttgtt   <  2:2707040‑M2/134‑1 (MQ=255)
                                                                                                                                     tTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAACttgtt   <  1:2179373‑M2/134‑1 (MQ=255)
                                                                                                                                     tTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAACttgtt   <  2:1961491‑M2/134‑1 (MQ=255)
                                                                                                                                     tTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAACttgtt   <  1:1513572‑M2/134‑1 (MQ=255)
                                                                                                                                     tTGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGATTGAACTGTAACttgtt   >  2:1911078‑M2/2‑135 (MQ=255)
                                                                                                                                      tGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAACttgttg  <  2:112553/135‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                      
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGTGCTACGCTAGTTACAGCTTGTGATGTTACTGCACTGCTTGCAGGTGCTACATATGTTGTAGCAGCACTACTTGGTGCTGGTGTTACTACAGTTTGAGCAGCTGCACTACTTGCTTGAACTGTAACTTGTTG  >  Annotation_U21_Trimmed_contig_8/1‑135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.