New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Annotation_U21_Trimmed_contig_10 1 =0 (0.000)487 (0.440)
+GTTTATTCCGGCA
54/232 2.1 82.6% noncoding (117/117 nt) rasttk_feature_creation_tool=RNA_reps_5S_rRNA 5S rRNA # 5S ribosomal RNA ‑ 3 prime truncation
?Annotation_U21_Trimmed_contig_12 = 910 228 (0.700)noncoding (8/73 nt) rasttk_feature_creation_tool=tRNAscan‑SE tRNA‑Lys‑TTT

Only 100 of 801 total aligned reads displayed.

AAGTCGGCATTATCACTTATTAATGCCATATATTTACTTTTATGAAACATAGCACTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Annotation_U21_Trimmed_contig_12/778‑1004
                                                                                                                                    |                                                                                                                                      
          tATCACTTATTAATGCCATATATTTACTTTTATGAAACATAGCACTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAat                                                                                                                            <  1:783/135‑1 (MQ=255)
            tCACTTATTAATGCCATATATTTACTTTTATGAAACATAGCACTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAatat                                                                                                                          <  2:2207255/135‑1 (MQ=255)
               cTTATTAATGCCATATATTTACTTTTATGAAACATAGCACTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAAt                                                                                                                       <  1:2706151/135‑1 (MQ=255)
                             atatTTACTTTTATGAAACATAGCACTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAgg                                                                                                           >  1:2571458/1‑133 (MQ=255)
                               atTTACTTTTATGAAACATAGCACTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATTGGGGATACAGGGCTc                                                                                                       >  2:925280/1‑135 (MQ=255)
                                     ttttATGAAACATAGCACTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCt                                                                                                 <  2:1377929/135‑1 (MQ=255)
                                      tttATGAAACATAGCACTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCtg                                                                                                >  1:2304166/1‑135 (MQ=255)
                                         aTGAAACATAGCACTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCtgtg                                                                                              >  1:2887005/1‑134 (MQ=255)
                                           gAAACATAGCACTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGAc                                                                                            >  1:2613338/1‑134 (MQ=255)
                                                     aCTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGt                                                                                 >  1:1327805/1‑135 (MQ=255)
                                                     aCTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGt                                                                                 >  2:2077964/1‑135 (MQ=255)
                                                          tttGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGc                                                                                                         >  2:1675533/1‑106 (MQ=255)
                                                           ttGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCa                                                                           <  1:604470/135‑1 (MQ=255)
                                                           ttGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCa                                                                           <  1:2665227/135‑1 (MQ=255)
                                                            tgtgCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTc                                                                                                                                 >  2:17265/1‑80 (MQ=255)
                                                            tgtgCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGTGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCat                                                                          >  1:738503/1‑134 (MQ=255)
                                                            tgtgCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAg                                                                          >  2:888999/1‑135 (MQ=255)
                                                             gtgCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGa                                                                         <  1:53069/135‑1 (MQ=255)
                                                                cTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGc                                                                      <  2:1007033/135‑1 (MQ=255)
                                                                 tATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACg                                                                                                                                     <  1:1897750/71‑1 (MQ=255)
                                                                 tATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATg                                                                       >  1:1106864/1‑133 (MQ=255)
                                                                 tATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATg                                                                       >  2:2047892/1‑133 (MQ=255)
                                                                     aGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTcc                                                                 <  1:1193438/135‑1 (MQ=255)
                                                                      gCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTccc                                                                >  2:1854801/1‑135 (MQ=255)
                                                                           ggcggactcgaacCGTCGACACCCTGATTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagctt                                                            <  2:1167182‑M2/128‑77 (MQ=255)
                                                                           ggcggactcgaacCGTCGACACCCTGATTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagctt                                                            <  2:1956414‑M2/128‑77 (MQ=255)
                                                                           ggcggactcgaacCGTCGACACCCTGATTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagctt                                                            <  1:2445278‑M2/128‑77 (MQ=255)
                                                                           ggcggactcgaacCGTCGACACCCTGATTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagctt                                                            <  2:212983‑M2/128‑77 (MQ=255)
                                                                           gACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTg                                                           >  2:2725528/1‑135 (MQ=255)
                                                                           gACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTg                                                           >  2:518597/1‑135 (MQ=255)
                                                                                  tCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAg                                                         <  2:191269/130‑1 (MQ=255)
                                                                                    gAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATc                                                   >  1:977148/1‑134 (MQ=255)
                                                                                        cgtCGACACCCTGATTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcg                                              >  1:1156433‑M2/2‑45 (MQ=255)
                                                                                         gTCGACACCCTGATTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcga                                             <  1:1001106‑M2/135‑92 (MQ=255)
                                                                                         gTCGACACCCTGATTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaac                                                                                                                           >  1:166046‑M2/1‑44 (MQ=255)
                                                                                         gTCGACACCCTGATTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaac                                                                                                                           <  2:166051‑M2/57‑14 (MQ=255)
                                                                                            gACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCAttt                                           <  1:2522748/134‑1 (MQ=255)
                                                                                             acaccctgattaACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatg                                         <  1:2361505‑M2/130‑96 (MQ=255)
                                                                                             acaccctgattaACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatg                                         <  1:1447948‑M2/130‑96 (MQ=255)
                                                                                             acaccctgattaACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatg                                         <  1:5587‑M2/130‑96 (MQ=255)
                                                                                              caccctgattAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcc                                                                                        >  2:1525145‑M2/5‑39 (MQ=255)
                                                                                               accctgatTAACAGTCAGATGCTCTACCACCTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg                                        >  2:1409898‑M2/4‑38 (MQ=255)
                                                                                               accctgatTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatggg                                       <  1:1411645‑M2/132‑98 (MQ=255)
                                                                                               accctgatTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg                                        >  1:1496317‑M2/4‑38 (MQ=255)
                                                                                               accctgatTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg                                        >  2:2444019‑M2/4‑38 (MQ=255)
                                                                                               accctgatTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg                                        >  1:1559449‑M2/4‑38 (MQ=255)
                                                                                               accctgatTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg                                        >  2:44737‑M2/4‑38 (MQ=255)
                                                                                               accctgatTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg                                        >  1:162927‑M2/4‑38 (MQ=255)
                                                                                               accctgatTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg                                        >  1:1249887‑M2/4‑38 (MQ=255)
                                                                                               accctgatTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg                                        >  2:2768831‑M2/4‑38 (MQ=255)
                                                                                                ctctGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTAgcat                                      >  1:2203815‑M2/1‑131 (MQ=255)
                                                                                                ctctGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTAAAAATATAATGGGGGATACTGGGCTAGAACCTGTGACCTCCTGCTTGTAAGGAAGATGCTCTCCCATCTGAGCTATTCCCCCATTTAgcat                                      >  2:2692369‑M2/1‑131 (MQ=255)
                                                                                                 tctGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTAgcatg                                     >  2:2270626‑M2/1‑130 (MQ=255)
                                                                                                 cctgATTAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggagttaagaagcttgacttatgtgttcgacttgggaa                                     >  2:1054349‑M2/2‑36 (MQ=255)
                                                                                                     aTTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGc                                                                      <  1:2486138/98‑1 (MQ=255)
                                                                                                     aTTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTAgcatggcaa                                 <  1:2029827‑M2/135‑10 (MQ=255)
                                                                                                     aTTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTAgcatggcaa                                 <  2:1309988‑M2/135‑10 (MQ=255)
                                                                                                       tAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggta                               <  1:2800040‑M2/135‑106 (MQ=255)
                                                                                                       tAACAGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggta                               <  2:2646863‑M2/135‑106 (MQ=255)
                                                                                                        aacaGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtat                              <  2:2866910‑M2/135‑107 (MQ=255)
                                                                                                        aacaGTCAGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtat                              >  1:212983‑M2/1‑29 (MQ=255)
                                                                                                               aGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttc                       >  2:835328‑M2/1‑22 (MQ=255)
                                                                                                               aGATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttc                       >  1:1951557‑M2/1‑22 (MQ=255)
                                                                                                               aGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTAgcatggcaacgtcctaccc                       >  1:888999‑M2/1‑116 (MQ=255)
                                                                                                               aGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTAgcatggcaacgtcctac                         >  2:2369400‑M2/1‑116 (MQ=255)
                                                                                                                gATGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttct                      <  1:643197‑M2/135‑115 (MQ=255)
                                                                                                                  tGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttct                      <  1:1273954‑M2/133‑115 (MQ=255)
                                                                                                                  tGCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcga                                             <  2:1485198‑M2/110‑92 (MQ=255)
                                                                                                                  tGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTAgcatggcaacgtcctaccctcg                    <  1:1776208‑M2/135‑23 (MQ=255)
                                                                                                                   gCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtccttccctcgcagggggagatcccccaactactctcgtcgttaagaagattgacttctgtgttcgacatgggaacaggtatatccttctcac                   >  1:2060864‑M2/1‑18 (MQ=255)
                                                                                                                   gCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcac                   >  1:2830393‑M2/1‑18 (MQ=255)
                                                                                                                   gCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcac                   >  2:1136528‑M2/1‑18 (MQ=255)
                                                                                                                   gCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcac                   >  2:1756052‑M2/1‑18 (MQ=255)
                                                                                                                   gCTCTACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcac                   >  2:772342‑M2/1‑18 (MQ=255)
                                                                                                                   gCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTAgcatggcaacgtcctaccctc                     >  2:2613338‑M2/1‑112 (MQ=255)
                                                                                                                      ctACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcacta                 >  1:1039088‑M2/1‑15 (MQ=255)
                                                                                                                      ctACCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcacta                 >  1:330427‑M2/1‑15 (MQ=255)
                                                                                                                       tACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTAgcatggcaacgtcctaccctcgcaggg               <  1:2765639‑M2/135‑28 (MQ=255)
                                                                                                                        aCCAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatc               <  2:393832‑M2/134‑122 (MQ=255)
                                                                                                                          cAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaacttctctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgt             <  2:2563612‑M2/134‑124 (MQ=255)
                                                                                                                          cAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtc            >  2:1618829‑M2/1‑11 (MQ=255)
                                                                                                                          cAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgt             <  1:1850208‑M2/134‑124 (MQ=255)
                                                                                                                          cAACTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcac                   >  2:1211842‑M2/1‑11 (MQ=255)
                                                                                                                          cAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTAgcatggcaacgtcctaccctcgcagggggc            <  2:709434‑M2/135‑31 (MQ=255)
                                                                                                                           cacTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtca           >  2:666003‑M2/2‑10 (MQ=255)
                                                                                                                           aaCTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtca           >  2:2829419‑M2/1‑10 (MQ=255)
                                                                                                                            aCTGAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtcac          <  1:1527148‑M2/135‑127 (MQ=255)
                                                                                                                               gAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtcaccac       >  2:1893906‑M2/1‑6 (MQ=255)
                                                                                                                               gAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtcaccac       >  1:454478‑M2/1‑6 (MQ=255)
                                                                                                                               gAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtcaccac       >  2:1091451‑M2/1‑6 (MQ=255)
                                                                                                                               gAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtcaccac       >  2:1273954‑M2/1‑6 (MQ=255)
                                                                                                                               gAGCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg                                        >  2:306565‑M2/1‑6 (MQ=255)
                                                                                                                                 gCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtcaccaca      <  2:2487676‑M2/134‑131 (MQ=255)
                                                                                                                                 gCTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtcaccaca      <  1:1691941‑M2/134‑131 (MQ=255)
                                                                                                                                  cTAtgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtcaccaca      <  1:1069334‑M2/133‑131 (MQ=255)
                                                                                                                                    atgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtcaccacactct  >  2:335122‑M2/1‑1 (MQ=255)
                                                                                                                                    atgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtcaccaca      <  2:557713‑M2/131‑131 (MQ=255)
                                                                                                                                    atgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtcaccaca      <  2:1546425‑M2/131‑131 (MQ=255)
                                                                                                                                    atgccggaataaacgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaacaggtatatccttctcactatcgtcaccac       >  1:1870929‑M2/1‑1 (MQ=255)
                                                                                                                                    aaCGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTAgcatg                                     <  1:363114‑M2/100‑6 (MQ=255)
                                                                                                                                    |                                                                                                                                      
AAGTCGGCATTATCACTTATTAATGCCATATATTTACTTTTATGAAACATAGCACTAATTTGTGCTATGAGCCGTGACAGGCTCGAACTGTCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAACGGCTCAAAATATAATGGGGGATACAGGGCTCGAACCTGTGACCTCCTGCTTGTAAGGCAGATGCTCTCCCAACTGAGCTAATCCCCCATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Annotation_U21_Trimmed_contig_12/778‑1004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.