New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Annotation_U21_Trimmed_contig_10 1 =0 (0.000)517 (0.450)
+GTTTATTCCGGCA		 61/230 1.5 81.2% noncoding (117/117 nt) rasttk_feature_creation_tool=RNA_reps_5S_rRNA 5S rRNA # 5S ribosomal RNA ‑ 3 prime truncation
?Annotation_U21_Trimmed_contig_12 = 910 266 (0.780)noncoding (8/73 nt) rasttk_feature_creation_tool=tRNAscan‑SE tRNA‑Lys‑TTT

Only 100 of 567 total aligned reads displayed.

TAAGTTAGCACAGAGTGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Annotation_U21_Trimmed_contig_10/132‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGTCGACAGTTCGAGCCTGTC  <  Annotation_U21_Trimmed_contig_12/910‑853
                                                                                                                                    |||||||||||||                                                          
TAAGTTAGCACAGAGTGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTT                                                                      <  2:1427386/135‑1
  AGTTAGCACAGAGTGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTA                                                                    <  1:2817718/135‑1
  AGTTAGCACAGAGTGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTT                                                                     <  2:718546/134‑1
      AGCACAGAGTGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTC                                                                 <  1:1374013/134‑1
       GCACAGAGTGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTACCGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCG                                                               <  2:1356462/135‑1
       GCACAGAGTGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCG                                                               <  1:474411/135‑1
       GCACAGAGTGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCG                                                               <  2:1539591/135‑1
           AGAGTGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCAT                                                           >  1:2157147/1‑135
           AGAGTGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCAT                                                           >  2:1587642/1‑135
               TGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCT                                                       >  2:2957585/1‑135
               TGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATA                                                          <  1:601802/132‑1
               TGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCAT                                                           <  2:822858/131‑1
               TGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCAT                                                           <  2:1920021/131‑1
               TGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCAT                                                           <  2:438384/131‑1
                GTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATCGCTC                                                      >  2:1148131/1‑135
                GTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTC                                                      >  1:900362/1‑135
                GTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTC                                                      >  2:1682085/1‑135
                GTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTC                                                      >  2:1760121/1‑135
                GTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTC                                                      >  2:150329/1‑135
                GTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTC                                                      >  1:2275882/1‑135
                GTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTC                                                      >  1:1063274/1‑135
                GTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTC                                                      >  2:529608/1‑135
                 TGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCA                                                     <  1:20752/135‑1
                     GACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 >  2:3000625/1‑135
                     GACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 >  1:1886449/1‑135
                     GACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 >  2:406821/1‑135
                     GACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 >  2:739867/1‑135
                      ACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 <  2:2438935/134‑1
                      ACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 <  2:663005/134‑1
                      ACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 <  1:339073/134‑1
                      ACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 <  1:1237519/134‑1
                      ACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 <  2:2674970/134‑1
                      ACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 <  1:1002710/134‑1
                          TAGTGAGAAGGATATACCTGTTCCCATGTCGAACACATAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAG                                             >  2:129079/1‑134
                          TAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAG                                             >  1:1292513/1‑134
                          TAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAG                                             >  2:2610335/1‑134
                          TAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAG                                             >  2:873906/1‑134
                          TAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAG                                             >  1:816/1‑134
                          TAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 >  1:987141/1‑130
                          TAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 <  2:2874446/130‑1
                          TAGTGAGAAGGATATACCAGTTCCCATGTCGAACACAGAAGTCAAGCGTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAG                                             >  1:1758756/1‑134
                           AGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAG                                           <  2:1992149/135‑1
                            GTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGC                                          >  2:1886775/1‑135
                            GTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGC                                          >  2:503184/1‑135
                            GTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTA                                              <  1:1142693/131‑1
                              GAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGC                                          >  2:594930/1‑133
                               AGAAGGATATACCTGTTCCCATGTCGAACACCGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATC                                       <  2:2067286/135‑1
                               AGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGGGAGGGTTTGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCA                                         <  1:2779373/133‑1
                               AGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGTCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCA                                         <  2:1087133/133‑1
                               AGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCA                                         <  1:1682085/133‑1
                               AGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCA                                         <  2:2174008/133‑1
                               AGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCA                                         <  2:2228361/133‑1
                               AGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCA                                         <  1:2650583/133‑1
                               AGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTAGTCCGGCATAGCTCAGTTGGTAGAGCA                                         <  2:2295660/133‑1
                                 AAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCT                                      <  2:1616867/134‑1
                                   GGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTG                                     <  2:967924/133‑1
                                   GGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTG                                     <  1:858147/133‑1
                                     ATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTg                                 >  2:478134/1‑134
                                       ATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGGAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTT                               <  2:2115683/135‑1
                                       ATACCTGTTCCCAAGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGAACGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCATTTGGTAGAGCATCTGACTGTT                               >  1:2885294/1‑135
                                        TACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTA                              <  1:612795/135‑1
                                            TGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTG                                                 >  2:2797315/1‑112
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  1:1102790/1‑131
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  2:1255737/1‑131
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  1:1851992/1‑131
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  1:2424916/1‑131
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  2:2934181/1‑131
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  1:2493914/1‑131
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  2:2724410/1‑131
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  1:2705629/1‑131
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  2:1117358/1‑131
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  1:939440/1‑131
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  1:731790/1‑131
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  1:659973/1‑131
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATC                           <  1:2121778/129‑1
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTT                               <  2:629330/125‑1
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCA                                         >  2:919308/1‑115
                                                 CCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAG                                                         <  2:1860210/99‑1
                                                 CCATGTCGAACACAGAAGGCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      >  2:848683/1‑131
                                                  CATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggtgt                    <  1:1490661/135‑6
                                                  CATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggtgt                    <  2:2811872/135‑6
                                                  CATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggtgt                    <  2:2366094/135‑6
                                                       CGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCAT                                                           <  1:2377397/91‑1
                                                           CACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTC           >  1:202882/1‑135
                                                           CACAGAAGTCAAGCTTCTTAACGCCGAGAGGAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATACCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTC           >  2:1713606/1‑135
                                                            ACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTCG          <  1:529608/135‑1
                                                                     AAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTCGAGtccgcc  <  1:2234981/134‑7
                                                                     AAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTCGAGtccgcc  <  1:3006710/134‑7
                                                                     AAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTCGAGtccgcc  <  1:1983987/134‑7
                                                                     AAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTCGAGtccgcc  <  1:1936983/134‑7
                                                                     AAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTCGAGtccgcc  <  1:2849091/134‑7
                                                                     AAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTCGAGtccgcc  <  1:1812554/134‑7
                                                                     AAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTCGAGtccgcc  <  2:800887/134‑7
                                                                     AAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTCGAGtccgcc  <  2:2538008/134‑7
                                                                     AAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTCGAGtccgcc  <  1:1424183/134‑7
                                                                     AAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTCGAGtccgcc  <  1:502449/134‑7
                                                                     AAGCTTCTTAACGCCGAGAGGAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGGGTGTCGACGGTTCGAGtccgcc  <  1:782281/134‑7
                                                                     AAGCGTCTTAACGCCTAGAGTAGTTGGGGGATCGACCCCTTCGTGGGTAGGACGTTGCCAGGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCTTCTGACTGTTAATCAGGGTGTCGACGGTTCGAGtccgcc  <  1:1601370/134‑7
                                                                                      GAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCA                                         >  1:260484/1‑78
                                                                                                                 GGGTAGGACGTTGCCATGCGTTTATTCCGGCATAGCTCAGTTGGTAGAGCATCTGACTGTTAATCAGggt                      <  1:408893/70‑4
                                                                                                                                    |||||||||||||                                                          
TAAGTTAGCACAGAGTGTGGTGACGATAGTGAGAAGGATATACCTGTTCCCATGTCGAACACAGAAGTCAAGCTTCTTAACGCCGAGAGTAGTTGGGGGATCGCCCCCTGCGAGGGTAGGACGTTGCCATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Annotation_U21_Trimmed_contig_10/132‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGCTCAGTTGGTAGAGCATCTGACTTTTAATCAGAGGGTCGACAGTTCGAGCCTGTC  <  Annotation_U21_Trimmed_contig_12/910‑853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.