| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Annotation_U21_Trimmed_contig_11 | 1 = | 0 (0.000) | 1997 (1.520) +C |
136/254 | 0.0 | 99.8% | intergenic (–/‑74) | –/rasttk_feature_creation_tool=RNA_reps_SSU_rRNA | –/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| ? | Annotation_U21_Trimmed_contig_3 | 2 = | 8 (0.020) | intergenic (–/+370) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Integral membrane protein LafC, accessory function in glycolipid and LTA synthesis | |||||
Only 100 of 2033 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACA > Annotation_U21_Trimmed_contig_11/1‑133 | gacagtgattgttctcgatggtatagttaaatagttgtcaaaagcgctaacaacgttgatatgacaacaatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCa > 2:1665923‑M1/133‑134 (MQ=255) attgttctcgatggtatagttaaatagttgtcaaaagcgctaacaacgttgatatgacaacaatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGAtt > 1:777631‑M1/126‑132 (MQ=255) gttctcgatgttatagttaaatagttgtcaaaagcgctaacaacgttgatatgacaacaatagtatacctttgaaaactgaacaaaattttgacaatcaatagtgtaggttcttacaaatcgCAAGATTATGTaa > 1:401351‑M1/123‑135 (MQ=255) gatgatatagttaaatagttgtcaaaagcgctaacagcgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTa < 2:1791603‑M1/12‑1 (MQ=255) aattaagttgttaaaaacgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGaa < 2:1604264‑M1/29‑1 (MQ=255) aatagttgtcaaaagcgctaacagcgttgatatgacaacgatagtagacctttgaaaactgaaaaaaattttgacaatcaatagtgtagggtcttacaaatctCAAGATTATGTAAGAAAACATTATGCGAAGTc < 2:73566‑M1/32‑1 (MQ=255) aatagttgtcaaaagcgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTc < 2:1257080‑M1/32‑1 (MQ=255) aatagttgtcaaaagcgctaacaacgttgatatgacaacaatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCTAGATTATGTAAGATAACATTATGCGAAGTc < 2:1097363‑M1/32‑1 (MQ=255) agttgttaaaaacgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaagattttgacaatcaatagtgtagggtcttacaaagcgCAAGATTATGTAAGAAATCATTATGCGAAGTCaa < 2:699358‑M1/34‑1 (MQ=255) agttgttaaaaacgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCaa < 1:2406403‑M1/34‑1 (MQ=255) agttgttaaaaacgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCaa < 1:495963‑M1/34‑1 (MQ=255) agttgttaaaaacgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCaa < 2:2041861‑M1/34‑1 (MQ=255) agttgttaaaaacgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTAAAt < 2:926969‑M1/35‑1 (MQ=255) ttgttaaaaacgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACAtt > 1:2826744‑M1/99‑120 (MQ=255) gttaaaaacgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGc < 2:1073454‑M1/39‑1 (MQ=255) gttaaaaacgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGc < 1:45456‑M1/39‑1 (MQ=255) gtcaaaagcgctaacaacgttgatatgacaacaatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTc > 2:2108057‑M1/97‑133 (MQ=255) aaaagcgctaacagcgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCaaa > 1:105261‑M1/94‑135 (MQ=255) aaaagcgctaacagcgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCaaa > 1:1683012‑M1/94‑135 (MQ=255) aaaagcgctaacagcgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCaa < 2:791384‑M1/41‑1 (MQ=255) aaaagcgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCaa < 2:1495386‑M1/41‑1 (MQ=255) aaaagcgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCaa < 1:2172603‑M1/41‑1 (MQ=255) aaaaacgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCaaa > 2:2837056‑M1/94‑135 (MQ=255) aaaaacgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCaa < 1:1268685‑M1/41‑1 (MQ=255) aaaaacgctaacaacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCaa < 1:1879088‑M1/41‑1 (MQ=255) taacagcgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAacaaacaa < 1:530780‑M1/50‑1 (MQ=255) caacgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcactagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAAAATTAAGCGAAGTCAATTCGCAAAACAAAAAATTa < 1:1001651‑M1/53‑1 (MQ=255) gcgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAAt < 1:2775717‑M1/55‑1 (MQ=255) cgttgatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATg > 1:177813‑M1/80‑135 (MQ=255) cgttgatatgacaacaatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATg > 2:506480‑M1/80‑135 (MQ=255) gatatgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCt < 2:1965159‑M1/60‑1 (MQ=255) atatgacaacgatagtagacctttgaaaacagaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCTCAAAACAAACAATTAATGAGCtt < 1:2643135‑M1/61‑1 (MQ=255) atgacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGa < 2:1217242‑M1/63‑1 (MQ=255) gacaacgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGaaa < 1:1966672‑M1/65‑1 (MQ=255) acgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGaaaaa < 2:2199051‑M1/67‑1 (MQ=255) acgatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGaaaaa < 2:2541779‑M1/67‑1 (MQ=255) gatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgttgggtcttacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACt > 2:1011795‑M1/65‑135 (MQ=255) gatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCg > 2:271010‑M1/65‑102 (MQ=255) gatagtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACt > 1:847471‑M1/65‑135 (MQ=255) agtagacctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTa < 1:727930‑M1/12‑1 (MQ=255) acctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGATCATGAAAAA‑G‑ACTAATCAttt < 2:1442221‑M1/79‑1 (MQ=255) acctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACtca > 1:2887817‑M1/57‑129 (MQ=255) acctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACtca < 2:2887817‑M1/73‑1 (MQ=255) acctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCAttt < 1:334680‑M1/79‑1 (MQ=255) ctttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑a > 2:240897‑M1/55‑123 (MQ=255) tttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAat > 1:2041861‑M1/54‑135 (MQ=255) ttgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAata > 2:654627‑M1/53‑135 (MQ=255) tgaaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCaaa < 2:1859395‑M1/42‑1 (MQ=255) aaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACtca > 1:2218716‑M1/50‑122 (MQ=255) aaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATga < 1:2357601‑M1/86‑1 (MQ=255) aaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATga < 1:3001184‑M1/86‑1 (MQ=255) aaaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATga < 1:294009‑M1/86‑1 (MQ=255) aaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATgag < 2:2251225‑M1/87‑1 (MQ=255) aaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATgag < 2:2774095‑M1/87‑1 (MQ=255) aaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATgag < 2:1301914‑M1/87‑1 (MQ=255) aaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATgag < 1:2006381‑M1/87‑1 (MQ=255) aaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATgag < 1:685070‑M1/87‑1 (MQ=255) aaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTGAATATgag < 1:2118178‑M1/87‑1 (MQ=255) aaactgaacaaaattttgacaatcaatagtgtagggtcttacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATgag < 1:1817238‑M1/87‑1 (MQ=255) acaaaattttgacaatcaatagggtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTg < 2:2611390‑M1/93‑1 (MQ=255) caaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGAt > 1:1336845‑M1/41‑135 (MQ=255) aaaattttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAAAG‑ACTCATCATTTAATATGAGAGTTTg < 1:1935984‑M1/94‑1 (MQ=255) attttgacaatcaatagtgtagggtcttacaaatcgAAAGATTATGTAATAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTg > 1:2728958‑M1/37‑135 (MQ=255) attttgacaatcaatagtgtagggtcttacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTg > 1:1732791‑M1/37‑135 (MQ=255) ttttgacaatcaatagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTgg > 2:34821‑M1/36‑135 (MQ=255) gacaatcaatagtgtagggtcttacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACtca < 1:1563995‑M1/73‑1 (MQ=255) atagtgtagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGaa < 1:1096781‑M1/111‑1 (MQ=255) tagtgtagtgtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACg > 1:161166‑M1/23‑135 (MQ=255) tagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAAAG‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTgg > 1:1387463‑M1/18‑135 (MQ=255) tagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTggc > 2:1156791‑M1/18‑135 (MQ=255) tagggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTggc > 2:2673432‑M1/18‑135 (MQ=255) gggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAAAG‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTggc > 2:1726692‑M1/16‑134 (MQ=255) ggtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTggc > 1:1166472‑M1/15‑132 (MQ=255) gtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCaaa < 1:919233‑M1/42‑1 (MQ=255) gtcttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑ATACTCATCATTTAATATTAGAGTTTGATCTTGTCTCAGGATGAAAGCTggcggc < 2:191024‑M1/122‑1 (MQ=255) cttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAAAG‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGgcggcg < 1:2534953‑M1/123‑1 (MQ=255) cttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAAAG‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGgcggcg < 1:151919‑M1/123‑1 (MQ=255) cttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTggc < 1:2315293‑M1/118‑1 (MQ=255) cttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGt < 1:1441232‑M1/123‑1 (MQ=255) cttacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTggc > 1:1204412‑M1/12‑129 (MQ=255) ttacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAAAG‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGt > 1:2579232‑M1/11‑134 (MQ=255) tacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGcc < 1:2256340‑M1/126‑1 (MQ=255) tacaaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGcc < 2:2320031‑M1/126‑1 (MQ=255) tacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGcc < 2:2476515‑M1/126‑1 (MQ=255) tacaaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGcc < 2:873883‑M1/126‑1 (MQ=255) caaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAAAG‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCt < 2:409429‑M1/128‑1 (MQ=255) aaatcgCAATATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACATACAATTAATGAGCTTGAAAAG‑G‑ACTCATCATTTACGCTGAGAGTTTGAGCGTGGCTCAGGATGTTCGCGGGCGGcgtgcgtac < 2:2950148‑M1/129‑5 (MQ=255) aaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCACAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCTaa < 2:583294‑M1/129‑1 (MQ=255) aaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAAAG‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCTa < 1:620402‑M1/129‑1 (MQ=255) aaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGcctca < 2:1564654‑M1/129‑3 (MQ=255) aaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCTaa < 2:2360511‑M1/129‑1 (MQ=255) aaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCTaa < 2:2164439‑M1/129‑1 (MQ=255) aaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCTaa < 2:452847‑M1/129‑1 (MQ=255) aaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCTaa < 2:1998562‑M1/129‑1 (MQ=255) aaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCTaa < 1:2465675‑M1/129‑1 (MQ=255) aaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCTaa < 1:971752‑M1/129‑1 (MQ=255) aaatcgCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATATTGGCTCAGGATGAACGCTGGCGGCGTGCCTaa < 2:1342128‑M1/129‑1 (MQ=255) aaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTgg < 2:1400778‑M1/100‑1 (MQ=255) aaatcaCAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCTaa < 1:2687293‑M1/129‑1 (MQ=255) cgCAATATTATGTAATAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑AATCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACa > 2:3009243‑M1/3‑135 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGATTATGTAAGAAAACATTATGCGAAGTCAATTCGCAAAACAAACAATTAATGAGCTTGAAAAA‑G‑ACTCATCATTTAATATGAGAGTTTGATCTTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATACA > Annotation_U21_Trimmed_contig_11/1‑133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |