New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Annotation_U21_Trimmed_contig_10 1 =0 (0.000)349 (0.420)
+ACATCGAAGAATCTTCCGTTGGAAGGTTCTTTTTTTGTGTCTAAAA
71/164 0.1 100% noncoding (117/117 nt) rasttk_feature_creation_tool=RNA_reps_5S_rRNA 5S rRNA # 5S ribosomal RNA ‑ 3 prime truncation
?Annotation_U21_Trimmed_contig_3 = 367983 0 (0.000)intergenic (‑70/–) rasttk_feature_creation_tool=tRNAscan‑SE/– tRNA‑Thr‑GGT/–

Only 100 of 492 total aligned reads displayed.

GGACTTGAACCGACGACCCCTTCCTTACCATGGAAGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Annotation_U21_Trimmed_contig_3/367851‑367983
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     tGAACCGACGACCCCTTCCTTACCATGGAAGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttaga                                                                                                                                 <  2:1714694‑M2/135‑8 (MQ=255)
          cgacgaCCCCTTCCTTACCATGGAAGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaa                                                                                                                            <  1:439564‑M2/135‑13 (MQ=255)
              gacCCCTTCCTTACCATGGAAGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaa                                                                                                                         >  2:2878769‑M2/1‑119 (MQ=255)
               acCCCTTCCTTACCATGGAAGTGCACTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATCTTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaa                                                                                                                       <  2:306969‑M2/135‑18 (MQ=255)
                    ttccttACCATGGAAGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaacc                                                                                                                  <  1:1711123‑M2/135‑23 (MQ=255)
                         tACCATGGAAGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttcc                                                                                                              <  2:573203‑M2/134‑27 (MQ=255)
                           ccATGGAAGTGCTCTACCTAGATGAGCTATATTGGCATTTATCATCTAAGATAGTATATAATATTTATTTACGCTGTAAAACAAATATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaac                                                                                                           >  2:1795795‑M2/1‑106 (MQ=255)
                             aTGGAAGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacgg                                                                                                         <  1:1392558‑M2/135‑32 (MQ=255)
                             aTGGAAGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacgg                                                                                                         >  2:1556486‑M2/1‑104 (MQ=255)
                             aTGGAAGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacgg                                                                                                         <  2:605341‑M2/135‑32 (MQ=255)
                                 aaGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACTCTGTAAAACCAAAATATGCCATGTAGCTAAAATttttagacacaaaaaaagaaccttccaacggaaga                                                                                                     <  1:2759432‑M2/135‑36 (MQ=255)
                                 aaGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaaga                                                                                                     <  1:2586061‑M2/135‑36 (MQ=255)
                                 aaGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaa                                                                                                                         >  1:1756110‑M2/1‑100 (MQ=255)
                                   gTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaaga                                                                                                     <  1:287650‑M2/133‑36 (MQ=255)
                                      ctctACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattct                                                                                                 >  2:1438104‑M2/1‑95 (MQ=255)
                                      ctctACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattct                                                                                                 >  1:2941229‑M2/1‑95 (MQ=255)
                                      ctctACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattct                                                                                                 >  1:577435‑M2/1‑95 (MQ=255)
                                      cactccCTAGCTGAGCTAGAGTGGCATTTATCAACTAAGATAGTATAACATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattct                                                                                                 >  2:2397840‑M2/3‑95 (MQ=255)
                                         tACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcga                                                                                             <  1:2369584‑M2/135‑44 (MQ=255)
                                         tACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcga                                                                                             <  1:1876742‑M2/135‑44 (MQ=255)
                                         tACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcga                                                                                             <  1:166827‑M2/135‑44 (MQ=255)
                                         tACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcga                                                                                             <  1:961393‑M2/135‑44 (MQ=255)
                                            cTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgt                                                                                          >  1:2002356‑M2/1‑89 (MQ=255)
                                            cTAGCTGAGATATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaacaaagaaccttccaacggaagattcttcgatgt                                                                                          >  2:2521650‑M2/1‑89 (MQ=255)
                                                 tGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaacct                                                                                                                 <  2:2130670‑M2/107‑24 (MQ=255)
                                                  gcgctATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcat                                                                                      >  1:889493‑M2/3‑83 (MQ=255)
                                                  gAGCTATAGTGGCATTTATCACCTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcat                                                                                      >  1:473284‑M2/1‑83 (MQ=255)
                                                  gAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatg                                                                                     >  2:440432‑M2/1‑83 (MQ=255)
                                                  gAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcat                                                                                      >  2:2765231‑M2/1‑83 (MQ=255)
                                                   aGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaataaccttccaacggaagattcttcgatgtgcatggc                                                                                   <  2:1493563‑M2/135‑54 (MQ=255)
                                                   aGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttctatgtgcatggc                                                                                   <  2:52346‑M2/135‑54 (MQ=255)
                                                   aGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggc                                                                                   >  1:859600‑M2/1‑82 (MQ=255)
                                                      tataGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaac                                                                                <  1:2259318‑M2/135‑57 (MQ=255)
                                                      tataGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaac                                                                                <  2:2744705‑M2/135‑57 (MQ=255)
                                                      tataGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatg                                                                                     <  2:2614976‑M2/130‑52 (MQ=255)
                                                       ataGTGTCATTTCTCAACTCAGATGGTATATCATATTTATTTACGCTGTAATACCAAAATATGCCATGTAGCTTAAATttttagacacaaacctagaaccttccaacggaagattcttcgatgtgcatggcaa                                                                                 >  2:2062515‑M2/1‑78 (MQ=255)
                                                       ataGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacg                                                                               >  2:1183356‑M2/1‑78 (MQ=255)
                                                        taGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttatacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacg                                                                               <  1:2779781‑M2/134‑58 (MQ=255)
                                                        taGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggacgattcttcgatgtgcatggcaacg                                                                               <  2:963769‑M2/134‑58 (MQ=255)
                                                        taGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacg                                                                               <  1:919322‑M2/134‑58 (MQ=255)
                                                        taGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacg                                                                               <  1:1018381‑M2/134‑58 (MQ=255)
                                                        taGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTGAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacg                                                                               <  2:1257756‑M2/134‑58 (MQ=255)
                                                        taGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGATTAAATttttagacacaaaaaaagaacattccaacggaatattcttcgatgtgcatggcaact                                                                               <  1:2338536‑M2/134‑58 (MQ=255)
                                                        taGTGGCATTTATCAACTAAGATAGTATATCATATTTATTAACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacg                                                                               <  1:328803‑M2/134‑58 (MQ=255)
                                                                tttATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatttgcatggcaacgacctaccct                                                                      <  2:1315505‑M2/135‑67 (MQ=255)
                                                                tttATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccct                                                                      <  1:2894200‑M2/135‑67 (MQ=255)
                                                                tttATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccct                                                                      <  1:1460733‑M2/135‑67 (MQ=255)
                                                                tttATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccct                                                                      <  1:1322138‑M2/135‑67 (MQ=255)
                                                                tttATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattct                                                                                                 <  2:1594329‑M2/108‑40 (MQ=255)
                                                                 ttATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaacaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctc                                                                     >  2:1991004‑M2/1‑68 (MQ=255)
                                                                  tATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcg                                                                    <  2:2198827‑M2/135‑69 (MQ=255)
                                                                  tATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcg                                                                    <  1:1585707‑M2/135‑69 (MQ=255)
                                                                  tATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaa                                                                                                                            <  2:2567668‑M2/79‑13 (MQ=255)
                                                                   aTCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgc                                                                   <  1:2672746‑M2/135‑70 (MQ=255)
                                                                   aTCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaac                                                                                                           >  1:1223453‑M2/1‑66 (MQ=255)
                                                                     cAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcag                                                                 <  1:109438‑M2/135‑72 (MQ=255)
                                                                       aCTCAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCATAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcaggg                                                               >  1:808748‑M2/1‑62 (MQ=255)
                                                                           aGATAGTATATCATATTTATTTACGCTGTAATACCAAAATATGCCAGGTAGCTTAAATttttagacacaataaaagaaccttcaaacggaagattcttcgttgtgaatggcatcgacctcccctcgcagggggcg                                                           <  2:1113254‑M2/135‑78 (MQ=255)
                                                                            gATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcga                                                          >  1:2131396‑M2/1‑57 (MQ=255)
                                                                            gATAGTATATAATAATTATTTACGCCGTAAAACCAAAATATGCCCTGGTGCTTAAAAttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcga                                                          >  2:1081305‑M2/1‑57 (MQ=255)
                                                                                   tataATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaactgaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatccccc                                                    >  1:1496836‑M2/1‑50 (MQ=255)
                                                                                   tatCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatccccc                                                    >  2:1923057‑M2/1‑50 (MQ=255)
                                                                                   tatCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccc                                                     >  1:2547744‑M2/1‑50 (MQ=255)
                                                                                   tatCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccc                                                     >  2:1749511‑M2/1‑50 (MQ=255)
                                                                                        tatttattTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactac                                              >  2:2977150‑M2/1‑45 (MQ=255)
                                                                                        tatttattTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactac                                              >  2:932688‑M2/1‑45 (MQ=255)
                                                                                         atttatttACGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaacta                                               <  1:911124‑M2/133‑90 (MQ=255)
                                                                                           ttatttaCGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactct                                           <  1:1280440‑M2/135‑94 (MQ=255)
                                                                                              tttaCGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatgtcaacgtcctaccctcgcagggggcgatcccccacctactctcgg                                        <  2:2350769‑M2/135‑97 (MQ=255)
                                                                                              tttaCGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcgg                                        <  2:1684669‑M2/135‑97 (MQ=255)
                                                                                              tttaCGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcgg                                        <  1:1631885‑M2/135‑97 (MQ=255)
                                                                                              tttaCGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcgg                                        <  1:1157484‑M2/135‑97 (MQ=255)
                                                                                                taCGCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaacctt                                                                                                                >  1:621888‑M2/1‑37 (MQ=255)
                                                                                                   gCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgtta                                   <  2:348787‑M2/135‑102 (MQ=255)
                                                                                                   gCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgtta                                   >  2:1157484‑M2/1‑34 (MQ=255)
                                                                                                   gCTGTAAAACCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgtta                                   >  2:2852343‑M2/1‑34 (MQ=255)
                                                                                                      gTAAAACCAAAATATGCCATGTAGAATAAATttatagacacaaaaaaagaaccttccaacggaagattcttcgatgttcatggcaaattcctacccacgcatggggcgataccccaacaacactcggcgttaaga                                <  2:83693‑M2/135‑105 (MQ=255)
                                                                                                          aaCCAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagct                            <  1:2720223‑M2/135‑109 (MQ=255)
                                                                                                             cAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttga                         >  2:1018381‑M2/1‑24 (MQ=255)
                                                                                                             cAAAATATGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttga                         >  2:2259318‑M2/1‑24 (MQ=255)
                                                                                                                  tatGCCATGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgac                        <  1:2985024‑M2/131‑113 (MQ=255)
                                                                                                                     gCCATGTAGCTTAAATttttagacacaacaaaagacccttccaacggaagattcttcgctgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtg                 >  1:281015‑M2/1‑16 (MQ=255)
                                                                                                                     gCCATGTAGCTTAAATttttagacacaaaaaaagaaccttcccacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtg                 >  2:128140‑M2/1‑16 (MQ=255)
                                                                                                                         tGTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttc              <  2:89756‑M2/134‑123 (MQ=255)
                                                                                                                          gTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcga            >  2:2685577‑M2/1‑11 (MQ=255)
                                                                                                                          gTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcga            >  2:1627865‑M2/1‑11 (MQ=255)
                                                                                                                          gTAGCTTAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcga            >  1:2405905‑M2/1‑11 (MQ=255)
                                                                                                                               ttAAATttttagaaacataaaaagaaccttccaacgtaagattcttagatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaaatactctcggcgttaagaagcttgaattatgtgttcgacatgg       >  2:705931‑M2/1‑6 (MQ=255)
                                                                                                                                tAACTttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg       >  2:2370631‑M2/1‑5 (MQ=255)
                                                                                                                                tAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg       >  1:514593‑M2/1‑5 (MQ=255)
                                                                                                                                tAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg       >  1:400469‑M2/1‑5 (MQ=255)
                                                                                                                                tAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg       >  1:10049‑M2/1‑5 (MQ=255)
                                                                                                                                tAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg       >  2:48946‑M2/1‑5 (MQ=255)
                                                                                                                                tAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg       >  2:109438‑M2/1‑5 (MQ=255)
                                                                                                                                tAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg       >  1:1413310‑M2/1‑5 (MQ=255)
                                                                                                                                tAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg       >  2:1406196‑M2/1‑5 (MQ=255)
                                                                                                                                tAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg       >  2:2652418‑M2/1‑5 (MQ=255)
                                                                                                                                tAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg       >  1:2637979‑M2/1‑5 (MQ=255)
                                                                                                                                tAAATttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgg       >  1:2059337‑M2/1‑5 (MQ=255)
                                                                                                                                    tttttagacacaaaaaaagaaccttccaacggaagattcttcgatgtgcatggcaacgtcctaccctcgcagggggcgatcccccaactactctcggcgttaagaagcttgacttctgtgttcgacatgggaaca  >  2:2806952‑M2/1‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                      
GGACTTGAACCGACGACCCCTTCCTTACCATGGAAGTGCTCTACCTAGCTGAGCTATAGTGGCATTTATCAACTAAGATAGTATATCATATTTATTTACGCTGTAAAACCAAAATATGCCATGTAGCTTAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Annotation_U21_Trimmed_contig_3/367851‑367983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.