New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Annotation_U21_Trimmed_contig_2 = 374547562 (1.140)538 (1.080) 86/252 0.8 66.0% coding (3920/5343 nt) rasttk_feature_annotation_tool=annotate_proteins_km er_v2 Predicted cell‑wall‑anchored protein SasA (LPXTG motif)
?Annotation_U21_Trimmed_contig_7 = 60417 0 (0.000)coding (3/753 nt) rasttk_feature_annotation_tool=annotate_proteins_km er_v2 Predicted cell‑wall‑anchored protein SasA (LPXTG motif)

Only 100 of 572 total aligned reads displayed.

GTTGAGCGACTGTCCGATGTACTATCTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Annotation_U21_Trimmed_contig_7/60283‑60419
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       gACTGTCCGATGTACTATCTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTGagtga                                                                                                           >  2:1749553/1‑130 (MQ=255)
       gACTGTCCGATGTACTATCTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTGagtga                                                                                                           >  1:365982/1‑130 (MQ=255)
       gACTGTCCGATGTACTATCTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTGag                                                                                                              <  1:2554507/131‑2 (MQ=255)
                    aCTATCTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcact                                                                                             <  2:115407‑M2/135‑21 (MQ=255)
                    aCTATCTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcact                                                                                             <  1:567744‑M2/135‑21 (MQ=255)
                     cTATCTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcacta                                                                                            >  1:1896365‑M2/1‑114 (MQ=255)
                     cTATCTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcacta                                                                                            >  1:773491‑M2/1‑114 (MQ=255)
                     cTATCTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcacta                                                                                            >  2:2159867‑M2/1‑114 (MQ=255)
                     cTATCTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcacta                                                                                            >  2:2334946‑M2/1‑114 (MQ=255)
                         cagaaGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctg                                                                                        <  2:1869574‑M2/133‑26 (MQ=255)
                         cTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctg                                                                                        <  2:2182094‑M2/135‑26 (MQ=255)
                         cTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctg                                                                                        <  1:1624178‑M2/135‑26 (MQ=255)
                         cTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctg                                                                                        <  1:1848689‑M2/135‑26 (MQ=255)
                         cTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctg                                                                                        <  1:250904‑M2/135‑26 (MQ=255)
                         cTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTAGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctg                                                                                        <  2:1002662‑M2/135‑26 (MQ=255)
                           gAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaa                                                                                      >  2:974562‑M2/1‑108 (MQ=255)
                             aGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagt                                                                                    <  2:2666611‑M2/135‑30 (MQ=255)
                                 gAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttga                                                                                 >  1:1989043‑M2/1‑102 (MQ=255)
                                 gAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttg                                                                                  >  2:2896698‑M2/1‑102 (MQ=255)
                                     cGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcag                                                                            <  2:715362‑M2/135‑38 (MQ=255)
                                     cGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcag                                                                            <  1:1257596‑M2/135‑38 (MQ=255)
                                     cGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcag                                                                            <  2:2986969‑M2/135‑38 (MQ=255)
                                     cGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcag                                                                            <  2:1127771‑M2/135‑38 (MQ=255)
                                     cGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcag                                                                            <  2:1526963‑M2/135‑38 (MQ=255)
                                     cGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcag                                                                            <  1:1182494‑M2/135‑38 (MQ=255)
                                     cGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcag                                                                            <  1:2717409‑M2/135‑38 (MQ=255)
                                                gTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactga                                                                     >  2:913539‑M2/1‑87 (MQ=255)
                                                gTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactga                                                                     >  2:461458‑M2/1‑87 (MQ=255)
                                                gTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactga                                                                     >  1:1488559‑M2/1‑87 (MQ=255)
                                                   gATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcga                                                               <  1:2680432‑M2/134‑51 (MQ=255)
                                                    aTGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaag                                                             >  1:1755227‑M2/1‑83 (MQ=255)
                                                    aTGCAGAACGCCTTTCTGACGTACTTATAGAATCACTCTTGGAACTTGAATCTGAATTCGATGTTGATACTTAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaag                                                             >  2:528347‑M2/1‑83 (MQ=255)
                                                      gCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagct                                                           >  1:115407‑M2/1‑81 (MQ=255)
                                                      gCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagct                                                           >  2:1028967‑M2/1‑81 (MQ=255)
                                                       ccGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGTAGTTGATACTGAATCAGATGTTgagtgactcgttgtcgcactatctgaagtttaatcagatactgaagtcgaagct                                                           <  2:1402668‑M2/134‑55 (MQ=255)
                                                       ccGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctg                                                          <  2:2822099‑M2/135‑56 (MQ=255)
                                                            cGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacg                                                      >  1:181497‑M2/1‑75 (MQ=255)
                                                            cGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacg                                                      >  2:1997141‑M2/1‑75 (MQ=255)
                                                             gACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggc                                                    <  1:303657‑M2/135‑62 (MQ=255)
                                                             gACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggc                                                    <  1:2118330‑M2/135‑62 (MQ=255)
                                                             gACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacg                                                      >  1:232258‑M2/1‑74 (MQ=255)
                                                             gACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaag                                                                   >  1:156612‑M2/1‑74 (MQ=255)
                                                                 ttCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatc                                                >  1:2872473‑M2/1‑70 (MQ=255)
                                                                 ttCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatc                                                >  2:601270‑M2/1‑70 (MQ=255)
                                                                  tCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatcc                                               <  2:842746‑M2/135‑67 (MQ=255)
                                                                        gTACTTATTGAATCACTCTTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgt                                          >  1:2079522‑M2/1‑63 (MQ=255)
                                                                        gTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgt                                          >  1:1930891‑M2/1‑63 (MQ=255)
                                                                         tacttactGAATCACTCTTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtac                                        >  2:2504434‑M2/1‑62 (MQ=255)
                                                                         tACTTATTGAATCACTCTTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtac                                        >  1:196989‑M2/1‑62 (MQ=255)
                                                                         tACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtac                                        >  1:1723753‑M2/1‑62 (MQ=255)
                                                                          aCTTACTGAATCACTCTTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtact                                       <  2:636691‑M2/135‑75 (MQ=255)
                                                                          aCTTACTGAATCACTCTTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtact                                       <  1:2243542‑M2/135‑75 (MQ=255)
                                                                            ttATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtact                                       <  1:605973‑M2/133‑75 (MQ=255)
                                                                                cGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactga                                 >  1:408577‑M2/1‑55 (MQ=255)
                                                                                cGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactga                                 >  1:291386‑M2/1‑55 (MQ=255)
                                                                                cGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtac                                        <  2:1475097‑M2/128‑74 (MQ=255)
                                                                                cGAATCACTCTTCGAAATTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactttctgaagttgaatcagatactgaagtcgaagctgtacggctatccgatgtacttactga                                 >  1:1073358‑M2/1‑55 (MQ=255)
                                                                                 gAATCACTCTTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactga                                 <  2:319126‑M2/134‑81 (MQ=255)
                                                                                 gAATCACTCTTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgaatg                                                                                                            <  1:2388794‑M2/59‑6 (MQ=255)
                                                                                 gAATCACTCTTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgaatg                                                                                                            <  1:1319282‑M2/59‑6 (MQ=255)
                                                                                 gAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaa                                >  1:819654‑M2/1‑54 (MQ=255)
                                                                                 gAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactga                                 <  2:1227291‑M2/134‑81 (MQ=255)
                                                                                 gAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactga                                 <  1:2622194‑M2/134‑81 (MQ=255)
                                                                                 gAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactga                                 <  1:2166000‑M2/134‑81 (MQ=255)
                                                                                 gAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactga                                 <  1:891670‑M2/134‑81 (MQ=255)
                                                                                    tCACTCTTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtac                                        <  2:1362002‑M2/124‑74 (MQ=255)
                                                                                     cACTCTTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatca                             <  2:2301725‑M2/134‑85 (MQ=255)
                                                                                     cACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatca                             <  1:2982‑M2/134‑85 (MQ=255)
                                                                                      aCTCTTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgaa                                                                                                              <  1:1212122‑M2/52‑4 (MQ=255)
                                                                                      aCTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatca                             <  1:1366272‑M2/133‑85 (MQ=255)
                                                                                       ctctTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactc                          <  2:241856‑M2/135‑88 (MQ=255)
                                                                                       ctctTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacg                                                      <  1:1430971‑M2/107‑60 (MQ=255)
                                                                                       ctctTTGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgaatg                                                                                                            <  2:2461909‑M2/53‑6 (MQ=255)
                                                                                       ctctTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactc                          >  1:2186504‑M2/1‑48 (MQ=255)
                                                                                         ctTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctt                        <  2:2543956‑M2/135‑90 (MQ=255)
                                                                                           ttgaaCTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttg                      <  1:863368‑M2/133‑92 (MQ=255)
                                                                                           tCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctg                                                                                        <  2:2123223‑M2/69‑26 (MQ=255)
                                                                                               aCTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaact                  <  2:898857‑M2/135‑96 (MQ=255)
                                                                                               aCTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaact                  <  1:219283‑M2/135‑96 (MQ=255)
                                                                                               aCTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaact                  <  2:1516865‑M2/135‑96 (MQ=255)
                                                                                               aCTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgt                                          <  2:2921180‑M2/111‑72 (MQ=255)
                                                                                               aCTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacg                                                      >  1:1517017‑M2/1‑40 (MQ=255)
                                                                                               aCTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgaatg                                                                                                            <  2:1425751‑M2/45‑6 (MQ=255)
                                                                                                 ttGAATCTGAATTCGATGTTGATACTGACTCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaacttg                >  1:952655‑M2/1‑38 (MQ=255)
                                                                                                 ttGAATCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaacttg                >  2:1796513‑M2/1‑38 (MQ=255)
                                                                                                     aTCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaacttga               <  1:1001822‑M2/132‑99 (MQ=255)
                                                                                                     aTCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaacttga               <  2:277301‑M2/132‑99 (MQ=255)
                                                                                                     aTCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaacttga               <  2:2717831‑M2/132‑99 (MQ=255)
                                                                                                     aTCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaacttga               <  1:69422‑M2/132‑99 (MQ=255)
                                                                                                     aTCTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagatgaacggctatccgatgtacttactgaatcactctttgaaattga               <  2:361675‑M2/132‑99 (MQ=255)
                                                                                                     aTCTGAATTCGATGTTGATACTGAATCAGATGTT                                                                                                               <  2:2218237‑M2/35‑2 (MQ=255)
                                                                                                       cTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaacttgaatctg          <  1:2460657‑M2/135‑104 (MQ=255)
                                                                                                       cTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatc                                                >  1:2825327‑M2/1‑32 (MQ=255)
                                                                                                       cTGAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaa                                                                                      <  2:1598030‑M2/59‑28 (MQ=255)
                                                                                                         gAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaacttgaatctgaa        >  2:40494‑M2/1‑30 (MQ=255)
                                                                                                         gAATTCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaacttgaatctgaa        >  2:259432‑M2/1‑30 (MQ=255)
                                                                                                             tCGATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtac                                        >  2:1301206‑M2/1‑26 (MQ=255)
                                                                                                               gATGTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactgaatcactctttgaacttgaatctgaattcgat  >  1:277301‑M2/1‑24 (MQ=255)
                                                                                                                  gTTGATACTGAATCAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaag                                                             >  2:2608201‑M2/1‑21 (MQ=255)
                                                                                                                               cAGATGTTgagtgactcgttgacgcactatctgaagttgaatcagatactgaagtcgaagctgaacggctatccgatgtacttactg                                  >  2:1961384‑M2/1‑8 (MQ=255)
                                                                                                                                      |                                                                                                               
GTTGAGCGACTGTCCGATGTACTATCTGAAGTTGAATCGGAGACAGAGGTCGATGCCGAACGACTTTCTGACGTACTTATCGAATCACTCTTCGAACTTGAATCTGAATTCGATGTTGATACTGAATCAGATGTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Annotation_U21_Trimmed_contig_7/60283‑60419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.