| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AE015451_phaM1 | 1,499,508 | +C | intergenic (+85/‑79) | trpS CDS (Tryptophan‑‑tRNA ligase) → / → zapE CDS (putative enzyme with nucleoside triphosphate hydrolase domain) | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451_phaM1 | 1,499,506 | 1 | . | C | 92.4% | 825.7 / 71.6 | 267 | intergenic (+83/‑81) | trpS CDS (Tryptophan‑‑tRNA ligase)/zapE CDS (putative enzyme with nucleoside triphosphate hydrolase domain) | –/– |
| Reads supporting (aligned to +/- strand): ref base . (19/1); new base C (155/89); total (177/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.75e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 282 total aligned reads displayed.
GATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTG‑TT‑‑T‑CGGGCAC‑G‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTT > AE015451_phaM1/1499373‑1499636 | gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CGGGGAc‑g‑cc > 1:12830507/1‑137 (MQ=37)gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCGCGAAACAAGCGCCGCGGTGCACGGCACCAGATTTTCCAGTG‑TTC‑T‑CGGGCAc‑g‑cc > 2:14381565/1‑137 (MQ=25) aTGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCAAAACAGGCGCCGAGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CGGGCAc‑g‑ccc > 2:8668969/1‑136 (MQ=25) ggCCATTAAGATCCGGAACGAAGCTTTGGCACCACAACAGGACTGAGGCTTCCAAACGGTGGGAGCGGGCGTGCCCACGAAACGGGCACTGCGGTGCATGGCACTGTTTTTGCTGGTG‑TT‑‑TGGGGGCAc‑g‑cccgctc < 2:17977249/137‑6 (MQ=12) aTTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCcac > 2:8386896/1‑137 (MQ=21) cAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGACCGCGAAACAGGCGCCGCGGTGTCTGGCACCAGCTTTTCCGGTG‑TTC‑G‑CGGGCAC‑GTCCGCTCCcacaaa > 1:554812/1‑135 (MQ=21) gAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCACGGCACCGGCTTTGCCAGTG‑TTC‑G‑CGGGCAC‑GCCCACTCCCACAGAATGATTGc > 2:16211417/1‑137 (MQ=18) gAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGAGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGTCGGTG‑TTC‑G‑CGGGCACAC‑CCGCTCCCACAGACTGATTGc > 2:5387511/1‑137 (MQ=21) gAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCACGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGTCGGTG‑TTC‑G‑CAGGCACAC‑CCGCTCCCACAGCCTGACTGc > 2:7622155/1‑137 (MQ=18) gAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGACCGCGAAAAAGGCACCGCGGTGCATGGCACCAGCTTTGGCGGTT‑TTC‑A‑CGGGCCC‑GCCCGATCCCACAGGCTGATTGc > 2:11411147/1‑137 (MQ=255) gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGGCCGCGAAACAAGAGCCGCGGTGTATTGCACCAGCTTTGCCGGTG‑TT‑‑TGCGGGACC‑GCCCACTCCCACAGAATGAGTGACAtt > 2:14493285/1‑137 (MQ=255) gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGCCCACAAAAAAAGCGCCACGGGGGACGGCAACAGCTTTGTCAGTT‑TTC‑G‑CGGGCACAC‑CCACTCCCAAAAACTGATTTCCAtt > 1:4370863/1‑137 (MQ=255) gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAAGCGCCACGGTGCACTGCACCAGCTTTTCCGGTG‑TTC‑G‑CGGGCAC‑GCCCCCTCCCACAAAATGATTGCCAtt > 2:8098455/1‑137 (MQ=18) gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCAAAAAAAGCGCCGCGGTGCATGGCACCGGCTTTTCCGGTG‑TT‑‑TGCGGGCACAC‑CCGCTCCCACAGAATGATTGCCAtt > 2:12625641/1‑137 (MQ=18) gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCACGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TT‑‑CGCGGGCAC‑GCCCGCTCCCACAGACTGATTGCCact > 2:15842965/1‑135 (MQ=21) gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGTCCGCAAAACAGGAGCCACGGTGCATGGCACCGGCTTTTCCGGTGTTT‑‑T‑CGGGCAC‑GCCCACTCCCACCGACGGATTGCCCtt > 1:17232763/1‑137 (MQ=21) gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCGCGAAACAAGAGCCACAGTGCACGGCACCAGATTTGCCAGTG‑TT‑‑TGCGGGCAC‑GCCCACTCCCACAAAATGATTGCCact > 2:6169870/1‑135 (MQ=255) ttGGCACCACAGCGGGACTGAGGCTGCAAAAAGGTGGGAGCGGGTGTGCCAGAGAAACGGGCGCTGTGGTGCGGGGCACCGGTTTTGCTGGTG‑TT‑‑CGCGGGAAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCgg < 2:10918848/137‑1 (MQ=255) tgggaaccacAGAAGGAGTGGGGCGACAAAAGGGGGGGAGAGGGTGTTCCCGCGAAACAGGCTCCGTGGGGCATGGCACCGGTTTTGCTGGTG‑TTC‑G‑TGGGCAC‑CCCCGCTCCCACAGACTGATTGCCATTAAGCgg < 1:9022621/132‑1 (MQ=255) tGGCACCACAGCGGGATTGAGGTTGCCAAATGGTGGGAGCGGTTGTTCCCGCGAAACGGGCGCCGTGGGGCAGGGAACTGGCTTTGCTGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCggg < 2:1833063/137‑1 (MQ=16) tGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGTGGGCTTGCCCGCGAAACGGGCGCCGCGGTGCATGGCACTTGCTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCggg < 2:17134834/137‑1 (MQ=21) gaaccacAGAAGGATGGGGGCTACAAAATGGGGGGAGCGGGTGTTCCCGAGAAACAGGCGCCGTGGGGCGTGGCACTGGTTTTTCCGGTT‑TTC‑G‑CGGGCAC‑CCCCGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 1:9341229/135‑1 (MQ=255) gCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TT‑‑CGAGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 2:16713815/137‑1 (MQ=21) gCACCACAGAAGGGTGGGTGCGGCAAAATGGGGGGAGTGGGAGTTCCCGAGAAACAGGCGCCGGGGGGTGTGTCACTGGTTTTGTTGTTG‑TT‑‑CGTGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 1:2070509/137‑1 (MQ=255) gCACCACAGAAGGATTGAGGCTGCAAACCGGTGGGAGGGGGCGTTCCCGAGAAAAGGGCGCCACGGGGCGGGGCACTGGTTTTGCTGGGG‑TT‑‑TGCGGGCAC‑TCCCGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 1:12384849/137‑1 (MQ=255) gCACAACAGCAGGACGGAGGCTGCCAAACGTTGGGAGCGGGTGTGCCCGCGAAACGGGCTCCGCGGTGCATGGCACCGGCTTTGCTGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 2:14017001/137‑1 (MQ=18) acaccccAGCAGGACTGGGTTTGCCAAACGTGGGGATCGGTTTTCCCTGCGAAACGGGCGCCGTGGTGCGTGCCACCGTTTTTACCGGTG‑TTC‑G‑CGGGCAC‑ACCCGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 1:6619821/136‑1 (MQ=255) aaacaacaGAAGGATGGGGGCGGCAAAATGGGGGGGGGGGGGGGGCCCGCGAAAAGGGCGCGGTGGTGAGGGGCATTGGTTTTGCGGGTG‑TTC‑G‑TGGACAC‑CCCCGCTCCCACAGACTGATTGCCATTAAGCGGGcc < 1:3337782/132‑1 (MQ=255) accacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGTCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGAATGATTGCCATTAAGCGGGCCTa > 2:15524719/1‑137 (MQ=18) ccacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGAGTGCCCGCGAAACAGGCGCCGCGGTGCATGGTACCGGCTTTGCCGGTG‑TTCGT‑GGGGAAG‑C‑CCGCTCCCACAGACCGATTGCCATCAAAAGGGCCTAt > 1:14536208/1‑137 (MQ=18) gcagGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTCAGCGGGCCCATCGCTa > 2:13691235/1‑137 (MQ=18) aCTGAGGCTGCCAAACGGTGGGAGCGGGGGTGCCCACAAAACAAGAGCCACGGTGTATGGCACCAGATTTTTCGGTG‑TTC‑A‑CGGGCACAC‑CCACCCCCCCAAACTGATTGCCATTAAACGGGCCCATCGCTGCAGTg > 1:4112236/1‑137 (MQ=255) gAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCAGTTCACGGCACCGGCTTTGCCGGTT‑TTC‑G‑CGGGCCC‑GCCCGCTCCCACCGACTGATTGCCATTAAGCGGGCCTATCGCCACAGTGAca > 2:9880844/1‑136 (MQ=18) cTGCCAAACGGTGGGAGCGGGCGTTCCCGCGAAACAGACGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑TGGGCAC‑GCCCGCTCCCAAAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGcac > 2:7252958/1‑135 (MQ=21) cTGCCAAACGGTGGGAGCGGGCGTGTCCGCGAAACAGGCGCCGCGGTGTATGGCAACGGATTTGTCGGTG‑TT‑‑TGCGGGCAC‑GCCCGCTCCCACAGACCGATTGCCATTCAGCGGGCCTGTCGATACAGTGACGGccc > 2:2099695/1‑137 (MQ=21) cTGCCAAACGGTGGGAGCGGGCGTGTCCGCGAAACAGGCGCCGCGGTGCCTGGCCCCGGCTTTGCCGGTG‑TT‑‑TGCGGGGAC‑GCCCGCTTCCACAAACTGATTGCCATTAAGCGGGCCTATTGCTACAGCGACGGccc > 2:6722324/1‑137 (MQ=37) cTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCACGGCACCGGATTTGCCAGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAAAATGATTGCAATTCAACGGGCCTATCGCCACAATGACGGccc > 2:12508491/1‑137 (MQ=17) cTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAAGCGCCGCGGTGCATGGCACCGGCTTTTCCGGTT‑TTC‑G‑CGGGCCC‑GCCCGCTCCCACAGACTGATTGCCATTCAGCGGGCCTCTCGCTCCAGTGACGGccc > 2:14764576/1‑137 (MQ=17) aaaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGTAGTGCATGGCACCAGCTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTTCCACAGAATGATTGCCATTAAGCGGGACCACCGCTACAGTGACGGCCCGtttt > 2:11839400/1‑137 (MQ=17) aaaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCCCAGACTGATTGCCCTTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttt > 2:18772385/1‑137 (MQ=21) aaaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCACGtttt > 2:9333810/1‑137 (MQ=21) aaaCGGTGGGAGCGGGCGTGCCCCCGAAAACGGCGCCACGGTGCCTGGCACCGGCTTTGCCGGTG‑TTC‑T‑CGGGCAC‑GCCCACCCCCACAGAACGATTGCCATTCAACGGGCCTCTCGCTACAGTGGCGGTCCAtttt > 2:10754704/1‑137 (MQ=12) aaCGGTGGGAGCGGGCGTGCCCGCGAAACAAGCGCCGCGGTGCACGGCACCGGCCTTTCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAAAACGATTGACCTTAAGCGGGCCTATCGCTCCAGTGACGGCCCGttttt > 2:6925553/1‑137 (MQ=17) aCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACCGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt > 2:15937897/1‑137 (MQ=18) tttGGGAGCGGGCGTCCCCGCGAAATAGGCGTCGTGGGGCAGGGCACTGGTTTTGCTGGTG‑TTC‑G‑CGGGCAC‑TCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgt < 1:5784409/135‑1 (MQ=255) gAGCGGGCGTGCCCGCGAAACAAGCGTCCCAGTGCCTGGCCCCAGCTTTGTCCGTG‑TTC‑G‑CCGGCACAC‑CCGCTCCCACCAACTGATTGTCATTAAGCGGGCCTCCCTCTCCAGTGGCGGACCGTTTTTTGTTGCCt > 2:400945/1‑137 (MQ=9) gCGGGCGTGCCCACGAAACAGGCGCCGCGGTGCCTGGCACCGGCTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGACCCCACAAAATGGTTGCCATTAAGCGGGGCTATCGCTACAGTGAAGGCCCGGTTTTTGTTGCCTCg > 2:10089338/1‑137 (MQ=18) gggTGTGCCTGAGAAACAGGCGCCGCGGTGCGTGGCACCGGCTTTGCCGGTG‑TT‑‑CGCGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCt < 2:16479936/137‑1 (MQ=25) cccGCGAAACAGGCACCGCGGTGCATGGCACCGGCTTTGCCGGTG‑TT‑‑TGCGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAAt < 2:10593367/137‑1 (MQ=25) tgcgAAACAGGTTCCGTGGGGCAGGGCACTGTTTTTGTGGGTG‑TT‑‑TGGGGGCAC‑CCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:12828264/136‑1 (MQ=255) cgcgAAACAGGTGCCGCGGTGCATGGCACCGTCTTTACCGTTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:1977617/137‑1 (MQ=37) cgcgAAACAGGCGCCGCGGTGCATGACACCGGCTTTTCCGTTG‑TTC‑G‑CGGGCAC‑CCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:15655868/137‑1 (MQ=255) cgagAAACGGGCTCCGTGGTGCATGGAACTGGTTTTGCTGGTG‑TT‑‑CGGGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 2:1234948/134‑1 (MQ=25) cacgAAACAGTCGCCGCGGTGCATGACACCGGCTTTGTCGTTT‑TCC‑G‑CGGGCAC‑TCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCa < 1:8593520/135‑1 (MQ=255) gcgAAACGGGCGCTGTGGGGCAGGGCACTGGCTTTGCTGGTT‑TTC‑G‑CGGGCAC‑CCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt < 1:15761641/137‑1 (MQ=255) aaCAGGCGCCGAGGGGCGTGGCACCGTCTTTGCCGGTT‑TCC‑G‑CGGACAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACt < 1:16757533/137‑1 (MQ=255) cttcgcgGGGCAGGGCACTGGTTTTGCTGGTG‑TTC‑G‑CGGACAC‑CCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 1:10923403/134‑1 (MQ=255) ctccgcGGTGCATGGCACCGGCTTTTCCGGTG‑TT‑‑CGTGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 2:6490289/135‑1 (MQ=37) ctccgcGGTACGTGGCACTGGCTCTGCCGGTT‑TTC‑G‑GGGGCACTC‑CCGCTCACACAGACTGAGTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 1:5500727/135‑1 (MQ=255) cgctgcGGTGCATGGCACCGGCTTTGCTGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACATACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 2:17446809/137‑1 (MQ=25) cgccgtGGTGCGTGACACCGTCTTTGCCGGTG‑TT‑‑CGCGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 2:7882999/137‑1 (MQ=37) cgccgtGGTGCATGGCACTGTCTTTTCTGGTT‑TTC‑G‑CGGACAC‑CCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 1:2432918/137‑1 (MQ=255) cgccgcGGTGCGTGGCACGGGTTTTGCAGGTG‑TT‑‑CGTGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 1:10425024/137‑1 (MQ=37) cgGTGCATGGCACCGGCTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACg < 2:17891395/137‑1 (MQ=37) cATGGCACCGGTTTTCCGGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATc < 1:7686484/137‑1 (MQ=37) cATGGCACCGGCTTTGCCGGTG‑TT‑‑CGCGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATc < 2:6417235/137‑1 (MQ=37) caccGGCTTTGCCGGGG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCa < 1:11420721/134‑1 (MQ=38) accGGCTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTACCGAATCATGACTCCCTTAGAACGCTATCAAGCAg > 1:14210515/3‑137 (MQ=38) accGGCTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAg > 1:13585468/3‑137 (MQ=38) cGGCTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGAt > 2:48268/1‑137 (MQ=38) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCGTGACTACCTTAGAACGCTATCAAGCAGATCTg > 2:15637092/1‑137 (MQ=38) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 1:10052060/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 2:2191682/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 2:278876/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 2:3548856/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 1:12067149/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 1:366654/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 1:14339335/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 1:15105480/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 1:2748043/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 2:10823602/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 1:2707465/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 2:13319116/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 1:18466759/1‑137 (MQ=39) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCATTAGGACGCTATCAAGCAGATCTg > 2:13724964/1‑137 (MQ=38) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCATTAGAACGCTATCAAGCAGATCTg > 1:4452831/1‑137 (MQ=38) cTTTGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGAATCCCTTAGAACGCTATCAAGCAGATCTg > 1:7335606/1‑137 (MQ=38) ttGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGaa > 2:15151939/1‑137 (MQ=39) ttGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGaa > 1:15624613/1‑137 (MQ=39) ttGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGaa > 1:10546976/1‑137 (MQ=39) ttGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACG‑ATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGaaa > 1:18858225/1‑137 (MQ=38) ttGCCGGTG‑TTC‑G‑CGGGCAC‑GCCCGCTCCCACAGAATGATTGCAATTGAGCGGGCATATCGCTACAGTGACGGCAAGGTTTTTGTTGCCTCGCTAACGAATCATGACTACCTTAGGACGCTATCAAGTAGATCTGaa > 2:4386115/1‑137 (MQ=25) tgttcgcGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTccc < 2:13460306/131‑1 (MQ=255) ttagcGGACAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTGTGTTGCCTCGCTAACGAATCATGACTNCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGa < 1:18194793/133‑1 (MQ=255) tcgcGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGAc > 1:18035305/4‑137 (MQ=255) tcgcGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGAc < 2:2667833/134‑1 (MQ=255) tcgcGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGAc > 2:17720065/4‑137 (MQ=255) tcgcGGGCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCNATCAAGCAGATCTGAAACGTCCCGAc > 1:18617284/4‑137 (MQ=255) gggCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGActtct > 2:18612934/1‑137 (MQ=255) ggCAC‑GCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGActtctt < 1:12504200/137‑1 (MQ=255) | GATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTG‑TT‑‑T‑CGGGCAC‑G‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTT > AE015451_phaM1/1499373‑1499636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |