Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AE015451_phaM15,737,7560AG36.8% 281.6 / 101.1 253intergenic (+45/+26)hutF CDS (probable formiminoglutamate deiminase)/PP_5037 CDS (lipocalin family lipoprotein)–/–
Reads supporting (aligned to +/- strand):  ref base A (64/96);  new base G (0/93);  total (64/189)
Fisher's exact test for biased strand distribution p-value = 7.81e-16
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 259 total aligned reads displayed.

TGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCT‑GAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAG  >  AE015451_phaM1/5737621‑5737892
                                                                                                                                        |                                                                                                                                          
          ttggtaCGCCAGGGGCGACATTCCCAGGAAGATGAAAGCGGGCGGGCGTTTCCCAAGTTTTTGCGCCATCTTTTGGACT‑GAGCGTACCGGGTTTCCGTTGCAGCCTTTCGCGTGCAAGCCCGCGAAGGGTTg‑caacg                                                                                                                                <  2:4516244/136‑1 (MQ=255)
          ttggggCGCCAGGGGCGGCATTCCCAGGAAAATGAAAGCGGGTGGTCGTTTGCCAAGGTGTTGCGCCAGTTTTTGGGCT‑GATCGTACTGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg‑caacg                                                                                                                                <  2:17112608/136‑1 (MQ=255)
          ggggtgCACAAGGGGTGGCATGCCCAGGAAGATGAAAGAGGGGGGGCGTTTGCCAAGGTGTTGCACAAGCTTTGGGGCG‑GAGCGTACTGGGGTTGTGTGGCAGCCCTTCGCGGGAAAGCCTGCGAGGGGTTg‑caacg                                                                                                                                <  2:18046984/135‑1 (MQ=255)
                 gcCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCT‑GAGCGTACCGGGGTTGCGTTTTCGCCCCTCGCGTGTACACCCGCCAAAAGCTG‑GGACACAAcccc                                                                                                                         >  1:13768410/1‑137 (MQ=255)
                      gggCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCT‑GAGCGTACCGGGGTTTCCTTTTCGCCCTTCTCGAGTCAGGCCTCGAAGGAGTG‑GGACACAACCCC‑caaaa                                                                                                                   >  2:11200751/1‑137 (MQ=255)
                      gggCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCT‑GAGCGTACCGGGGTTGCGTTTCAGCCCCCCGCGTTCCAAACCCCGAAGGGTTG‑CCACACAACCCC‑caaaa                                                                                                                   >  2:14066910/1‑137 (MQ=255)
                         gggccggCCAAGGAGGAGGAAGGTGGGAGGGTGTTGGCAAGGGTGTTGCGCCAGTTTTGGGGCG‑GGGGGGACGGGGGTGGCGTTGCAGCTCTTTGCGGGCAGGCCGGAGAGGGGTGG‑CAACGCAACCCC‑AAAAAACt                                                                                                                <  2:1623554/131‑1 (MQ=255)
                           gcATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCATCTTTTGGGCT‑GAGCGTACTGGGGTTGCGTTGCAGCCCTTCGCGTACAATCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCa                                                                                                              <  2:8871785/137‑1 (MQ=255)
                                cccAGGAAGATAAAAGTGGGTGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTGGGGCT‑GAGCGTACGGGGGTTGCGTTGCGTCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑AAACGCAACCCC‑AAAAAACTCAGTGCa                                                                                                         <  2:14461113/137‑1 (MQ=255)
                                ccagggaaggggaaggGGGGTGGGTGTTTGCGAGTGTTTTGCTCCGGTTTTGGGGCT‑GAGCGGACTGGGTTGGTGTTGCACCCTTTTGCGTGCAATCCTGAAGGGGGTTA‑CAACGCAACCCC‑AAAAAACTCAGTGCa                                                                                                         <  1:17751154/133‑1 (MQ=255)
                                     gAAGATAAAAGCGGGCGGGTGTTTGCCAAGGTGTTGCGCCAGTTTTTGGGCT‑GAGCGTCCTGGGGTTGCGTTGCAGCCCTTCGCGTGCAATCCTGCGAGGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCAttttt                                                                                                    <  2:8611726/137‑1 (MQ=255)
                                     gAAAATGAAGGTGGGCGGGTTTTTGCAAGGGTGTGGCGCCAGTTTTGGGGCT‑GAGCGTACCGGGTTTGCGTTGCATCCTTTCGCGTACAATCCCGTGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCAttttt                                                                                                    <  2:14626928/137‑1 (MQ=255)
                                               gggggggggcGTTTGCCAGGGTTTTGCGCAAGTTTTTGGGCT‑AAGCGTACTGGGGTTGTGTTGCAGCCCTTTGCGTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCt                                                                                          <  2:13434433/135‑1 (MQ=255)
                                                tgggcgggtGTTTGCCAAGGTGTTGCTCCAGTTTTTGGGCT‑GAGTGTCCCGGGGTTGCGTTGCATCCCTTCGCGTGCAATCCCGCGAGGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTg                                                                                         <  2:2645839/136‑1 (MQ=255)
                                                     gggcgTTTTCCAAGGTGTTGCGCCATCTTTTGGTCT‑GAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAATCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCgg                                                                                    <  2:9401005/137‑1 (MQ=255)
                                                           ttGCCAAGGTTTTTCTCCAGCTTTGGGGTG‑GGGCGGAACGGGGGTGGTTTGAAGCCTTTCGGGGGAAAGCCCGAGAGGGGTGG‑AAACGAAACCCCAAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcgcc                                                                               <  1:7768508/137‑1 (MQ=255)
                                                             gCCAGGGTGTGGCGCCGGCTTTGGGGCG‑GAGCGTACTGGGGTTGCGTGGCAGCCCTTCGTGTGAAATCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcgcccgc                                                                            <  2:10749565/137‑1 (MQ=255)
                                                                   tttttGCACCAGCTTTTGGGCG‑GAGCGGACCGGGGGTGCTTTGCAGCCCTTCGCGTGAAAGCCATCGAAGGGTGG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATc                                                                      <  2:17322664/134‑1 (MQ=255)
                                                                       tctgcCAGTTTTGGGGCG‑GAGCGTACGGGGGTGGGGGGGCATCCTTTCGTGTACAAGCCAGCGAGGGTTTA‑AAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                  <  1:1615680/134‑1 (MQ=255)
                                                                       tGCGCCATTTTTTGGGTT‑GGACGTACCTGGGTTGCTTTTCACCCCTTCGCTTTCAAGCCCGCGAGGGGTTG‑CAACGCAACCCC‑AAAGAACTCAGTGCATTTGTACTATTTGCTGATTGGACGCCCGTCAGATCAAGc                                                                  <  2:13582704/137‑1 (MQ=255)
                                                                       tGCGCCAGTTTGTGGGTG‑GAGTGTACAGGGGGTGCGTTGCAGCCCTGCGCGTGCAAGCCCGCGGGGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                  <  2:15906341/137‑1 (MQ=255)
                                                                       tGCGCCAGCTTTTGGGCT‑GAGCGCACTGGGGTTGTGTTGCAGCCCTTCGCGTGCAGGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                  <  2:14971432/137‑1 (MQ=255)
                                                                       tGCGCAAGCTTTGGGGCT‑GAGCGTACTGGGGTTGCGTGGCAGCCTTTCGTGTAAAAGCCCGCGAAGGGTGG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                  <  2:16929728/137‑1 (MQ=255)
                                                                        gcgcCAGTTTTGGGGTG‑GAGTGTACCGGGGTTGCGTGGCAGCCCTTTGCGGGCAGGCCCGCGAGGGGTGG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCg                                                                 <  2:12991072/137‑1 (MQ=255)
                                                                        gcgcCAGTTTTGGGGTG‑GAGCGTACTGGGGTTGTGTTGCATCCCTTCGTGTGCAAGCCCGCGAGGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCg                                                                 <  2:17855559/137‑1 (MQ=255)
                                                                        gcgcAAGTTTTGGGGTG‑GAGCGGACGGGGGTTGTGTTGCAGCCTTTTGCGGGAAAGCCCGAGAGGGGTGG‑AAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCg                                                                 <  1:9299577/137‑1 (MQ=255)
                                                                         ctccAGCTTTTGGGCG‑GAGCGTACCGGGGTTACGTTCCATCCCTTCTCGTGCAGTCCCGCGAAGGGTTA‑AAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCgg                                                                <  2:2313633/135‑1 (MQ=255)
                                                                         cgcCATCTTTTGGGCG‑AAGTGCACTGGGGTTGTTTTACATCCCTTCGCGGACAATCCCGTGAGGGGTGG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCgg                                                                <  1:17116196/137‑1 (MQ=255)
                                                                         cgcCAGTTTTGGGGCT‑GAGCGGACCGGGGTTGCGTGGAAGCCTTTTGTGTGCAACCCCGCGAAGGGTGG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCgg                                                                <  1:16308244/137‑1 (MQ=255)
                                                                         cgcAAGCTTTGGGGCT‑GAGCGTACTGGGGTGGCGTTGCAGCCCTTCGCGTACAGGCCCGCGAAGGGTGG‑AAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCgg                                                                <  2:11868247/137‑1 (MQ=255)
                                                                         agcCAGTTTTGGGGTT‑GAGCGGGCGGGGTTTGTGTTGCATCTCTTCTTTGAAAAGCCCGCAAAGGGTTA‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCgg                                                                <  1:12214281/136‑1 (MQ=255)
                                                                          tccAGTTTTGGGGCG‑GAGTGTACTGGGGTTGTGGTGCATCTTTTTGTGTGCAATCCCGAGAGGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGc                                                               <  1:2993428/136‑1 (MQ=255)
                                                                          gcaaGCTTTGGGGCT‑GAGCGGACCGGGGTTGTGTTGCATCCTTTCGTGTGAAATCCCGCGAGGGGTGG‑AAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGc                                                               <  2:8326480/134‑1 (MQ=255)
                                                                          cccAGTTTTTGGGGTGGGGGGTACGGGGGTTGTGTTGCATCTTTTTTTGTGAAATCCCGGGGGGGGTTA‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCgg                                                                <  1:206400/136‑1 (MQ=255)
                                                                             aGCTTTTGGGCG‑GAGCGGACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑AAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTgg                                                            <  2:16392424/137‑1 (MQ=255)
                                                                                           aGCGTACCGGGGTGGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctg                                               <  2:4655484/137‑1 (MQ=255)
                                                                                             tggactggggTTGTGTTGCACCCTTTTGGGGGAAAGCCTGGGAGGGGTGG‑AAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  1:10642834/131‑1 (MQ=255)
                                                                                             gggatgggggTGGTGTTGAAGCCTTTCGGGGGAAGGCCCGGGAGGGGTGA‑AACCGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  1:8115792/131‑1 (MQ=255)
                                                                                             ggTACTGGGTTTGTTTTGCATCCTTTCGTGTGAAAGCCCGGGAGGGTTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  1:3916366/136‑1 (MQ=255)
                                                                                             cgtcctggggTTGCGTGGCAGCCCTTCTTGTGCAAGCCCGCGAAGGGTGG‑CAACGCAACCCC‑AAAAAACTCATTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:5831392/131‑1 (MQ=255)
                                                                                             cGTACTGGGGTTGCTTTGCAGCCTTTCGCGTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:4050876/137‑1 (MQ=255)
                                                                                             cGTACCGGGGTTGTGTTGCATCCTTTCGCGGGCAAGCCCGCGAGGGTTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  1:4647463/137‑1 (MQ=255)
                                                                                             cGTACCGGGGTTGTGTTGCATCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:6503990/137‑1 (MQ=255)
                                                                                             cGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:17284875/137‑1 (MQ=255)
                                                                                             agcaCCGGGGTTGCAGCGAAGCCCTTCGCGTGCAAACCCGCGAAGGGTGG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:5332908/134‑1 (MQ=255)
                                                                                                actggggTTGTGTTGCAGCCCTTCGCGTGAAAGCCTGCGAAGGTTGG‑AAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc                                          <  2:11556653/134‑1 (MQ=255)
                                                                                                aCCGGGGTTGTGTTGCAGCCTTTCGTGTGCAATCCTGCGGAGGGTGA‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc                                          <  1:7134863/137‑1 (MQ=255)
                                                                                                aCCGGGGTTGCGTTGCATCCCTTCGCGTGCAAGCCCGCGAGGGGTGG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATTGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc                                          <  2:6979127/137‑1 (MQ=255)
                                                                                                  cGGGTTTGTGTTGCATCCTTTTGTGGGAAATCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCcgc                                        <  1:17552245/137‑1 (MQ=255)
                                                                                                  cGGGGTTGCGTTGCGGCCCTTCGTGTGAAATCCCGCGAGGGGTGG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCcgc                                        <  1:18456285/137‑1 (MQ=255)
                                                                                                       ttgtgttgcACCCTTTCGCGGGCAAGCCCGTGAGGGTTTA‑AAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCt                                   <  1:13933023/137‑1 (MQ=255)
                                                                                                          ctttgcACCCTTTTGCGTGCACGCCCACGAAGGGTTG‑CAACGCAACCCC‑AAAAAATTCATTGCATTGGTACTATTTGCGGATTGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGa                                <  2:6443401/135‑1 (MQ=255)
                                                                                                          cgttgcAGCCCTTTGTGTGCAAGCCCGCGAGGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGa                                <  2:7732855/137‑1 (MQ=255)
                                                                                                             tgcAGCCCTTCGTGTGCAAGCCCGCGAAGGTTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcag                             <  1:16371980/137‑1 (MQ=255)
                                                                                                                    tttCGTGGGCAAGCCCGCGAGGGGTGC‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                      <  1:13878656/136‑1 (MQ=255)
                                                                                                                    cttttcgTGCAAGCTAGAAAGGGGTGG‑CAACGCAACCCC‑AAAAAACTCAGTGCAGTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                      <  1:5730257/132‑1 (MQ=255)
                                                                                                                    cTTCGCGTGCAAGCCCGCGAGGGGTGG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                      <  2:18462029/137‑1 (MQ=255)
                                                                                                                    cTTCGCGTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATGTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATCCCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                      >  2:4719876/1‑137 (MQ=255)
                                                                                                                     ttCGCGTGCAAGCCCGCGAGGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtct                     <  1:9220841/137‑1 (MQ=255)
                                                                                                                      ttgcgTGCAAGCCCGCGAAGGTTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtctc                    <  1:11976049/135‑1 (MQ=255)
                                                                                                                       cgcgTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑GAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCa                   >  2:4903015/1‑137 (MQ=255)
                                                                                                                        gcgTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc                  >  2:9685491/1‑137 (MQ=255)
                                                                                                                         cgTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACg                 >  1:6517739/1‑137 (MQ=255)
                                                                                                                         cgTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACg                 >  2:7994353/1‑137 (MQ=255)
                                                                                                                          gTGCAAGCCCGCGAAGGTTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGc                <  2:11010849/137‑1 (MQ=255)
                                                                                                                          gTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTCTTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGc                >  2:7506149/1‑137 (MQ=255)
                                                                                                                          gTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGc                >  2:15561725/1‑137 (MQ=255)
                                                                                                                          gTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGc                >  2:12465127/1‑137 (MQ=255)
                                                                                                                          gTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGc                >  2:18864341/1‑137 (MQ=255)
                                                                                                                          gTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGc                >  2:15719357/1‑137 (MQ=255)
                                                                                                                          gTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGc                >  1:2015451/1‑137 (MQ=255)
                                                                                                                              aatcccGTGAGGGGTTA‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTccc            <  1:10394765/134‑1 (MQ=255)
                                                                                                                              aaGCCCGCGAAGTGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTccc            <  1:13566730/137‑1 (MQ=255)
                                                                                                                               aGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGa                                                                        <  2:2032672/76‑1 (MQ=255)
                                                                                                                               aGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa           >  2:18685563/1‑137 (MQ=255)
                                                                                                                               aGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa           >  2:5521384/1‑137 (MQ=255)
                                                                                                                               aGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa           >  2:11713905/1‑137 (MQ=255)
                                                                                                                                gCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg          >  1:15398522/1‑137 (MQ=255)
                                                                                                                                gCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg          >  2:2976481/1‑137 (MQ=255)
                                                                                                                                  ctgcgAGGGGTTA‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCNGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  1:18177094/135‑1 (MQ=255)
                                                                                                                                  cctcgAAGGGTGG‑AAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  2:4256729/134‑1 (MQ=255)
                                                                                                                                  ccGTGAAGGGTTA‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  2:14268650/137‑1 (MQ=255)
                                                                                                                                  ccGCGAAGGTTTA‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  2:10368996/137‑1 (MQ=255)
                                                                                                                                  ccGCGAAGGTTGG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  2:2896848/137‑1 (MQ=255)
                                                                                                                                  ccGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        >  2:6913564/1‑137 (MQ=255)
                                                                                                                                  ccGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  2:985397/137‑1 (MQ=255)
                                                                                                                                  ccGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  2:384949/137‑1 (MQ=255)
                                                                                                                                  ccGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  2:3405656/137‑1 (MQ=255)
                                                                                                                                  ccGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  2:2308139/137‑1 (MQ=255)
                                                                                                                                  ccGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  2:17750874/137‑1 (MQ=255)
                                                                                                                                   cgcgAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGcc       >  2:1883594/1‑137 (MQ=255)
                                                                                                                                   cagcgaGGGTTGACAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  1:12698788/132‑1 (MQ=255)
                                                                                                                                    gcgAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCg      <  2:8064387/137‑1 (MQ=255)
                                                                                                                                    gcgAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCg      >  2:8414520/1‑137 (MQ=255)
                                                                                                                                    gcgAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCg      >  1:9971148/1‑137 (MQ=255)
                                                                                                                                    gcgAAGGGTTA‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCg      <  1:14617948/137‑1 (MQ=255)
                                                                                                                                    gagAAGGGTTA‑CAACGCAACCCC‑AAAAAACTCAGTGCGTTTTTACGATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCg      <  1:13185151/135‑1 (MQ=255)
                                                                                                                                     cgAAGGGTGG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCgg     <  2:12355429/137‑1 (MQ=255)
                                                                                                                                      gAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGc    >  2:520107/1‑137 (MQ=255)
                                                                                                                                      gAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGc    >  1:12822086/1‑137 (MQ=255)
                                                                                                                                        |                                                                                                                                          
TGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCT‑GAGCGTACCGGGGTTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑CAACGCAACCCC‑AAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAG  >  AE015451_phaM1/5737621‑5737892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑