| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AE015451_phaM1 | 4,740,816 | T→G | intergenic (+53/+700) | gltA CDS (citrate synthase) → / ← yeiW CDS (putative oxidoreductase) | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451_phaM1 | 4,740,816 | 0 | T | G | 95.5% | 1269.4 / ‑6.3 | 378 | intergenic (+53/+700) | gltA CDS (citrate synthase)/yeiW CDS (putative oxidoreductase) | –/– |
| Reads supporting (aligned to +/- strand): ref base T (1/16); new base G (176/185); total (177/201) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.06e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 379 total aligned reads displayed.
AAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGCCAC > AE015451_phaM1/4740689‑4740952 | aGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCgg > 2:8200209/1‑137 (MQ=255) cGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAACTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCctc < 2:5303617/137‑1 (MQ=255) ggCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCctct < 1:11485559/137‑1 (MQ=255) ggCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCctct < 1:8894677/137‑1 (MQ=255) gTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTctc > 1:16377830/1‑135 (MQ=255) gTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTcgc > 1:302498/1‑137 (MQ=255) gTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTcgc > 2:6733616/1‑137 (MQ=255) tCCGCGCCAGCTGTCCACCGGCGAGCAGAAGCGCGCCATCGTTGCCCTGAAAGCCCGCAATTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAG‑CATTTTTTATTTGTCCTGTGCCGGCCTCTTcgtg > 2:1146442/1‑135 (MQ=255) ccGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCgg < 2:17555905/137‑1 (MQ=255) ccGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCgg < 1:6610789/137‑1 (MQ=255) ccGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCgg < 2:2941961/137‑1 (MQ=255) cgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGGCCCTTCGCGGACt > 1:1170653/1‑137 (MQ=255) cgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCt > 1:15297448/1‑137 (MQ=255) ccAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTg < 2:4110902/137‑1 (MQ=255) ccAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTg < 2:1415575/137‑1 (MQ=255) tGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAGGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAG‑CTTTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCcgc < 2:12551825/137‑1 (MQ=255) cacCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTGTTTGTCCT‑GTGCCGGCCTCTTCGCGGCCTTGCCCGCGAag < 2:6150983/137‑1 (MQ=255) cacCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAag < 2:13492827/137‑1 (MQ=255) ccGGCGAGCAGAAGCGCGACATCGTGGCCCTGAAAGACGGCAAGCAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTTTGCCGGCCTCTTCGCGGCCTTTCCCGCGAagag < 2:6865963/137‑1 (MQ=255) ggCAGAAGCGCGACATCGTTGCCTTGAAAGACCGCAAGTAAGCGGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGc < 1:412050/136‑1 (MQ=255) aGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCgga > 2:2609464/1‑136 (MQ=255) aGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGc > 2:15889376/1‑137 (MQ=39) aGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGc > 2:9266423/1‑137 (MQ=255) aGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCCCAGAGAGGCCGGc > 1:10394349/1‑137 (MQ=255) aGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACACAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCATCTTCGCGGCCTTGCCCGCGAAGAGGCCGGc > 2:11982861/1‑137 (MQ=255) aGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCAGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGc > 2:9604022/1‑137 (MQ=255) cAGAAGCGCGACATTGTTGCCTTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGTCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGcac < 1:2795504/137‑1 (MQ=255) cAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGTCCTTGCCCGCGAAGAGGCCGGcac < 1:13144201/137‑1 (MQ=255) cAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGcac < 2:10303232/137‑1 (MQ=255) aGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGcaca > 2:1967558/1‑137 (MQ=255) aGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGcaca > 1:9013958/1‑137 (MQ=255) aGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGCAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTTTCCTGTGCCGGCCTCTTCGTGGCCTTGCCCGCGAAGAGGCCGGcaca > 2:18779796/1‑137 (MQ=255) cgACATTTTTGCCCTGAAAGACCGCAAGGAATCTGCGGTAGCCGAACGCAAGAAGGCTCCCCTTGGGCAGCC‑TTTTTTGTTTGTCCTGTGCTGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGAcacc‑a < 1:10953088/137‑1 (MQ=25) cATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACaa > 2:16470485/1‑137 (MQ=255) cATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGATGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACaa > 1:3292054/1‑137 (MQ=38) tCGTTGCCCTGAAAGACCGCAAGTAAGCTGCNGTAGCCGAACGCAATAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTTGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACaaaa < 2:3772391/137‑1 (MQ=255) tCGTTGCCATGAAAGACCACAATTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCTTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACaaaa < 2:9191884/137‑1 (MQ=255) ttcccGGAAAGACCGAAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTGTTTGTCCTGTGCCGGCCTCTTCGTGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTc < 1:14244468/135‑1 (MQ=255) gACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCCCAGACACC‑ACAAAACCTCAGTTTTtctc > 1:12731015/1‑137 (MQ=39) gACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTtctc > 2:10703451/1‑137 (MQ=255) gACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGACGGCACAAACACC‑ACAAAAACCCAGTTTTtctc > 1:17548420/1‑137 (MQ=255) cGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTccgc < 2:15051738/137‑1 (MQ=255) aaGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCTCGGTCTTTCCCCCTAAGAAGCAGGCACAGACACC‑ACAAAACCCCCATTTTTTTccccccc > 1:5127741/1‑136 (MQ=255) aaGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGACTTGCCCGCGAAGAGGCCAGCACAGACACC‑ACAAAAAACCAATTTTTCTccgcccg > 1:5327201/1‑137 (MQ=37) aaGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGACCTGCCCGCGAAAAGGCCAGAACAAAAACC‑ACAAAACCTCAGTTTTTCTccgcccg > 1:13231214/1‑137 (MQ=255) gTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTGTTTGTCCTGTTCCGGCTTCTTCGCGGCCTTTCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCt < 1:7039070/137‑1 (MQ=255) tAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCTCGGCCGTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTc < 2:13301492/137‑1 (MQ=255) tAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAG‑CTTTTTTTGTTTGTCTTGTGCCGGCCTCTTCGTGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTc < 1:1842512/137‑1 (MQ=255) aaGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCCCAGACACC‑ACAAAACCTCAGTTTTTCTCCGCACGCTCa > 2:18172993/1‑137 (MQ=255) aaGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGAGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCa > 1:16983188/1‑137 (MQ=255) gcggCAGTAGCCGAACACAAGAAGGCGGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTTGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACg < 1:15013526/134‑1 (MQ=255) gCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTTTCCTGTGCCTGCTTCTTCGTGACTTTGCCCGAGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACg < 1:9796746/137‑1 (MQ=255) gCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCTGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTCTTCTCCGCCCGCCCAcc < 2:12682200/137‑2 (MQ=255) gCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACg < 2:2450040/137‑1 (MQ=255) gCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑CTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACg < 2:1040675/137‑1 (MQ=255) gCTGCAGTAGCCGAACACAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTTCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACg < 1:12888518/137‑1 (MQ=255) cTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTTTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑c < 2:1163579/137‑1 (MQ=255) cTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑c < 2:1231447/137‑1 (MQ=255) cTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑c < 2:13062221/137‑1 (MQ=255) cTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑c < 2:5517925/137‑1 (MQ=255) gCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGACTTTCCCGCAAAGAGGCCGGCACAGACACC‑CCAAAACACCCGTTTTTCTCCTCCCGTTCAAG‑ccg > 1:8324568/1‑135 (MQ=255) cAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGACTTGCCCGCGAAGAAGCCGGTACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAga > 1:1590726/1‑136 (MQ=255) aGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCCCTTCGCGGCCTTGCCCGCGAAAAGGACGGCACAGAAACC‑ACAAAACCTCAATTTTTCTCCGCCCGCTCACA‑CAAcc > 1:6082338/1‑137 (MQ=255) tAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAAACTCAGTTTTTCTCCGCCCGCTTACG‑CAGCCCt > 2:1282865/1‑137 (MQ=38) tAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCCTGCCCACGAAGAAGCCGGCACAGACACC‑ACAAAACATCAGTTTTTCTTCGCCCGCTCACG‑CAGCCCt > 2:5055988/1‑137 (MQ=255) ggacGAACGCAAGAGGGCTGCCTTCGGGCAGCC‑TTTTTTGTTTGTCCTGTTCTTGCCTCTTCGCGGCCTTTCCCGCGAGGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 1:1000671/134‑1 (MQ=255) aGCCGAACGCAAGAAGTCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 1:16712556/137‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTGTTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 2:146969/137‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTTTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 1:7713215/137‑1 (MQ=39) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTTCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 1:18709352/137‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 2:6094451/137‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 2:11848915/137‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 2:17846437/137‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 2:8819195/137‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 1:14548394/137‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 2:12144982/137‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 1:2590141/137‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAG‑CTTTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 2:11205431/137‑1 (MQ=255) aGCCGAACGAAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTGTTTGTCCTGTGCCGTCCTTTTCGCGGCCTTTCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCtt < 1:1931448/137‑1 (MQ=255) aaCGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGACGGAACAGACACC‑ACAAAAACTCAGTTTTTTTCCGCCCGCTCACA‑CAACCCTTTCAgg > 1:12528035/1‑137 (MQ=255) cGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGACTCTTCGCGGCCTTGCCCACGAAGAGGCCGGCACAGACACC‑ACCAAAAATCAATTTTTCTCCGCCCACTCAAA‑CCGCCCCTTCAAGGt > 1:8410259/1‑137 (MQ=255) cAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGTCTCTTCGCGGCCTTGCCCGCGAAGAGGCCAGCACAGAAACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCCTTCAGGGTAt > 1:15585102/1‑137 (MQ=255) cAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑CCAAAACCTAAGTTTTTCTCCGCCCGCTCACG‑CAGCCCTTTCAGGGTAt > 2:6415075/1‑137 (MQ=255) agaagGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCTTTCAGGGTATTg < 2:16241314/137‑1 (MQ=255) gaagGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGAAACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTAACG‑CAGCACTTTCAGGGTATTGa > 2:15714519/1‑137 (MQ=38) gaagGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCCCTTCTCGGTCTTTTCCACTAAAAGGCCGGCACAAACACC‑ACAAAACCCCCATTTTTTTCCCCCCCCTCCCG‑CCACCCCTTCCTGGTAttta > 1:1199540/1‑135 (MQ=255) aatgCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGCCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTCCTCCGCCCGCTCACG‑CAGCCCTCTCAGGGTATTGaa < 2:8082246/134‑1 (MQ=255) ggCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCCTGCCCGCGAAGAGGCCCGCACAGACACC‑CCAAAACCTCAGTTTTTCTCCGCCCGCTCACA‑CAGCACTTTCAGGGTATTGAACg > 1:2338573/1‑137 (MQ=255) ggCTGCCCTCGGGCAG‑CTTTTTTTATTTGTCCTTTGCCGGCCTCTTCGCGGCCTGGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCTTTCAGGGTATTGAACg < 1:3715360/137‑1 (MQ=255) gCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCTTTCAGGGTATTGAACGgcgc < 2:7292406/137‑1 (MQ=255) ccTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGGAGAGGCCGGCACAGACACC‑ACAAAAACTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCTTTCGAGGTATTGAACGGCGCAt > 2:5798913/1‑137 (MQ=255) ccTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCCTCGCGGCCTTGCCCACGAAAAGGCCGGCACAGACACCAACAAAAAC‑CAGTTTTTCTCCTCCCACTCCCGCCAACCCTTCCA‑GGTATTGAACGGCGCac > 1:1538755/1‑136 (MQ=255) tCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTTACG‑CAGCCCTTTCAGGGTATTGAACGGCGCAttc > 2:8515867/1‑135 (MQ=255) tCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGAAACC‑ACAAAACCTCCATTTTTCTCCACCCGCTCCCA‑CAGCCCTTTCAGGGTATTGGACAGCGCATcc > 1:18271363/1‑137 (MQ=255) ccGGGCAGCC‑TTTTTTCTTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCTTTCCGGGTATTGAACGGTGCATcc > 2:17068948/2‑137 (MQ=255) gggCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGTCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCGCACG‑CAGACCTTTCAGGGTATTGAACTGTGCATccac > 2:344977/1‑137 (MQ=255) cAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCAGCACAGACACC‑ACAAAAACTCAGTTTTTCTCCGCCCACTCACG‑CAGCCCTTTCAGGGTATTGAACGGGGCATCcaccac > 2:5684793/1‑137 (MQ=255) cttttttATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAAc < 1:17347929/136‑1 (MQ=255) tttATTTGTCCTTTGCTGGCCTTTTCGTGGCTTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACttgt < 1:3590148/137‑1 (MQ=255) ttATTTGTCCTGTGCTGGCCTCTTCGCGGCCTTTCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACttgtt < 1:4675322/137‑1 (MQ=255) | AAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACC‑ACAAAACCTCAGTTTTTCTCCGCCCGCTCACG‑CAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGCCAC > AE015451_phaM1/4740689‑4740952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |