| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AE015451_phaM1 | 1,932,640 | +C | intergenic (‑107/+43) | rluA CDS (23S rRNA (746) and tRNA (32) pseudouridine synthase) ← / ← minE CDS (Cell division topological specificity factor) | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451_phaM1 | 1,932,638 | 1 | . | C | 92.9% | 1755.0 / 130.2 | 497 | intergenic (‑105/+45) | rluA CDS (23S rRNA (746) and tRNA (32) pseudouridine synthase)/minE CDS (Cell division topological specificity factor) | –/– |
| Reads supporting (aligned to +/- strand): ref base . (31/4); new base C (265/192); total (301/196) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.38e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 523 total aligned reads displayed.
TCGAAGAGGATCTGGACATTCGACAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑G‑CC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTGCCGAT > AE015451_phaM1/1932502‑1932769 | gAAGAGGATCTGGACATTCGACAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGGAAGCCCACTCCTCCAAAAGATAGTCGTCCCCTGTAGGA‑G‑A‑GGG‑C‑TT‑T‑cc > 1:4607107/1‑137 (MQ=255) aaGAGGATCTGGACATTCGACATCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑G‑ccc < 2:11224683/137‑2 (MQ=255) aaGAGAATCTGGACATTCGACAGCGGCATTACAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑G‑ccc < 2:17121540/137‑2 (MQ=255) agGATTTGGACGTTCGACATTGGCATTGCAGGTCTAACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGTGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGGATATGCTTCCCCGGGAGGA‑G‑C‑GGG‑C‑TT‑G‑cccgcg < 1:17786108/137‑5 (MQ=37) cTGGACATTCGACAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTCCAAAAGATATGCGTCCCCTGTCGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAggg > 2:4550995/1‑137 (MQ=38) cTGGACATTCGACAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCACTCCCACAAAAGATATGCGTCCCCTGTGAGA‑G‑C‑GGG‑C‑TT‑GCCC‑GAGAAggg > 1:9239519/1‑137 (MQ=38) tGGACATTCGACAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGTGGGAAAACCCGCTCCTACAAAGGAGATGCGTCCCCCTTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAaggg > 1:3866536/1‑136 (MQ=255) ggACATTCGACATCGGCATTGCAGGTCTCACGAAAATAGCGGGAAACGTTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGGATATGCTTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCt < 2:11773777/137‑1 (MQ=37) ggACATTCGACAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGTGGGAAAGCCCCCTCCTCCCAAAGAGATGGGTTCCCCGTGGGAGG‑G‑GGG‑T‑TT‑C‑CC‑GCGAAaggat > 1:5894129/1‑135 (MQ=255) ggACATTCGACAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTCCAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCt > 2:18099402/1‑137 (MQ=255) aCAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTTGCGGGCAAACCCACTCCCCCCAAAGAAATGCATCCCCCGTCGGA‑G‑A‑GGGAT‑TT‑C‑CC‑GCAAAAGGATGCaaagaaa > 1:11021861/1‑132 (MQ=255) aCAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGGAAAACCACCCCCCCAAAAGAGATGCGTCCCCCGTAGGG‑GAG‑GGG‑T‑TT‑C‑CC‑ACGAAAGGCTGTaaaggag > 1:7244282/1‑132 (MQ=255) aCAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGTCCGCTCCTACAAAGGATGTGCGTCCCCTGTAGGG‑G‑CGGGG‑T‑TT‑T‑CC‑TAGAAGGGCTGTAAGGGAg > 2:8882203/1‑137 (MQ=37) aCAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTCCCAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑CTTT‑C‑CC‑GCGAAGGGCTGCAAAGCAg > 2:1309393/1‑137 (MQ=37) aCAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCAGGCAAACCCGCTCCCCCAAAAGAGCTGCGTCCCCCTTCGGA‑G‑C‑GGGTT‑TT‑C‑CC‑ACAAAGGGCTTCAAAGCaa > 2:16671605/1‑136 (MQ=255) cAGCGGAATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAGGCCCGCTCCTACAAAGGATATACGTCCCCTGGAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGc < 2:12320636/137‑1 (MQ=38) gacagttGCAGGTCCCACAAAAATAGCAGGAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGcccc < 2:15546497/132‑1 (MQ=37) tGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTAAAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCCAATTg > 2:17000982/1‑137 (MQ=255) gCAGGTCTCACGAAAATAGCAGGAAACGCTGGGGCCGCTTTGCGGCCCTTCGTGGGCAAGCCCGCTCCTAAAAAGGATATGCTTCCCTTGGAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGt < 1:4066339/137‑1 (MQ=38) tctcACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACt < 2:10200757/137‑1 (MQ=255) tctcACGAAAATAGCAGGAAACGCTGGGTCCGCTTTGCGGCCCTTCGCGGACAAACCCGCTCCTACAAAGGATAGGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACt < 1:17570637/137‑1 (MQ=38) tctaaagAAAGTAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGAAAGCCCGCTCCGAAAAAGGAGAGGCGTCCCTTGTGGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACt < 1:12249130/131‑1 (MQ=25) tctaaagAAAATAGCAGGAAACGTTGGGGCCGTTTGGCGGCCTTTCGCGGGCAAGCCCGCTCCTACAAAGGAGATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACt < 1:3707089/131‑1 (MQ=37) tcACGAAAATAGCAGGAAACGCGGGGGCCGCTTTGTGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGGATGTGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTAc < 1:16906516/137‑1 (MQ=38) aCGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAAACCGCTCCCCCAAAAGATATGTGTCCCCCGTAGGA‑G‑C‑GGG‑CTTT‑C‑CC‑GCGAAAGGATGGAAGGCAGCCCCAAACTGTTGACTAcat > 1:2858469/1‑135 (MQ=25) aaaaTAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCCCCCCCAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑AGG‑C‑TT‑GCCC‑ACGAAGGGCTGCAAGGCAACCCCAAATTGTCGACTCcgaaga > 2:17763409/1‑133 (MQ=37) aaaaTAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAAACCACTCCCCCAAAAGATATGCGTCCCCCGTAGGA‑GAG‑GGG‑T‑TT‑C‑CC‑ACGAAAGGCTGCAAAGCAACCCCAAACTTTCTCCTACACGGa > 2:1507743/1‑137 (MQ=255) aaaaTAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGAAAGCCCGCTCCTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑ACGAAGGGCTGCCAGGCAGCCCCAAATTGTCGACCACACGGa > 2:6408636/1‑137 (MQ=255) tAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAACCCGCTCCCCCAAAGGACCTGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGAAGCCCCAAACTGTCGAACACACGGATCCGCGATcc > 2:2745385/1‑137 (MQ=25) tAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGAAAACCCACCCCCCCCAAAGAAACGCGTCCCCCGTAGGA‑G‑C‑GGG‑T‑TT‑GCCC‑ACGAAGGGATGCAAAGCAGACCCAAACTGTCTACCCCGCGGATCAGCGATcc > 1:16535350/1‑137 (MQ=255) gCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGGATATGCGTCCCCTTTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGAt < 1:12893434/137‑1 (MQ=255) ccGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATg < 2:12817425/137‑1 (MQ=255) ccGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGGATATGCGTCCCCTGGGGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATg < 1:1910079/137‑1 (MQ=255) tGCGGCACTTCGCGGGAAAGCCCGCTCCTCCAAAAGATATGCGTCCCCTGTCGGA‑G‑C‑GGG‑T‑TT‑GTCC‑GCGGAGGGCTGCAAGGCAGCCCCCAATTTTCGACTCCGCGGATCCGCGATCCGGCAGGGTGATGTTCCGc > 1:7640787/1‑137 (MQ=255) gCGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGAATATGCGTCCCCTGTAGGA‑G‑C‑GGA‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCt < 1:7978424/137‑1 (MQ=255) agggAAAGCCCGCTCCCAAAAAGGATAGGAGTCCCCTGGAGGA‑G‑C‑GGG‑C‑TTAC‑CC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGag < 1:2462113/136‑1 (MQ=38) cAAGCCCGCTCCTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGagcagc < 2:14159835/137‑1 (MQ=255) cGCTCCTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCt > 2:8174062/1‑137 (MQ=255) ccTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGtt > 2:9434407/1‑137 (MQ=255) ccTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGtt > 1:11379195/1‑137 (MQ=255) cTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑T‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGttt < 2:4809440/137‑1 (MQ=255) tACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGtttt > 1:15109326/1‑137 (MQ=255) cAAAGGATATGCTTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACTCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTcc < 2:2112525/137‑1 (MQ=255) cAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑G‑CCTGCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTcc < 2:5160788/137‑1 (MQ=255) cAAAGGAGATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTcc < 1:1597932/137‑1 (MQ=255) aaaaGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑TCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTcc < 1:6248077/136‑1 (MQ=255) aaGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCg > 1:873742/1‑88 (MQ=255) aaGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAg > 1:15541852/1‑137 (MQ=255) aaGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAg > 1:10897748/1‑137 (MQ=255) aaGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAg > 2:4019794/1‑137 (MQ=255) aGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGc < 1:15355795/137‑1 (MQ=255) gATGTGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTc < 1:5535378/137‑1 (MQ=255) tatGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑NCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGa < 1:18744042/137‑1 (MQ=255) atGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGat > 2:5356100/1‑137 (MQ=255) atGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGat > 2:11490165/1‑137 (MQ=255) atGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGat > 2:3019789/1‑137 (MQ=255) atGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGat > 2:3531021/1‑137 (MQ=255) atGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCAAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGat > 2:13400077/1‑137 (MQ=255) gCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGatat > 2:12940243/1‑137 (MQ=255) gCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGatat > 1:17194717/1‑137 (MQ=255) gCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGatat > 1:14474947/1‑137 (MQ=255) gCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGatat > 2:2556518/1‑137 (MQ=255) gCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGatat > 1:3530363/1‑137 (MQ=255) gCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGatat > 2:10662726/1‑137 (MQ=255) gCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGatat > 2:9209725/1‑137 (MQ=255) gCGTCCCATGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGatat > 2:17323401/1‑137 (MQ=255) gTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGTAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGc > 2:13794962/1‑137 (MQ=255) gTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGc < 2:10428018/137‑1 (MQ=255) tCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGc > 1:8373822/1‑71 (MQ=255) tCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGca > 1:11628183/1‑137 (MQ=255) ccTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTc < 2:5844108/126‑1 (MQ=255) ccTGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCAcat < 2:14022756/137‑1 (MQ=255) tGTAGGA‑G‑T‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCAcatca > 2:10917889/1‑137 (MQ=255) tGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCAcatca > 2:8342798/1‑137 (MQ=255) tGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCAcatca > 2:7378171/1‑137 (MQ=255) tGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCAcatca > 2:5410502/1‑137 (MQ=255) tGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCAcatca > 2:12079380/1‑137 (MQ=255) tGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCAcatca > 2:9127958/1‑137 (MQ=255) tGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCAcatca > 1:10216384/1‑137 (MQ=255) tGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCAcatca > 1:14016980/1‑137 (MQ=255) tGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTAGTTTTCCAGCTCGCTATGCAcatca > 1:5103643/1‑137 (MQ=255) tGTAGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCACCAAATTGTCGACTACGCGGATCAGCGGTCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCCGCTGCCCTGGTTTTCCAGCTCGATATGCAtatca > 2:1436489/1‑137 (MQ=39) aGGA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCg > 1:6919489/1‑137 (MQ=255) gA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGtt > 2:14876242/1‑137 (MQ=255) gA‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGtt > 2:7149756/1‑137 (MQ=255) a‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACTTCATCGTTg < 1:9376868/137‑1 (MQ=255) a‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTg < 1:10561297/137‑1 (MQ=255) a‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTg < 2:4433290/137‑1 (MQ=255) a‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTg < 1:3370677/137‑1 (MQ=255) a‑G‑C‑GGG‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTg < 2:7796768/137‑1 (MQ=255) cac‑GGG‑C‑TT‑GCCC‑ACAAAGGGCTGCAAAGAAGACCCAAACTTTCGACCCCGCGGATCAACGATCCGGCAGGGTGATGTTCCGCTCCCAAATCGAGCAGCTGCCCTGGTTTTCCCGCTCGATATGCACACCCTCGttt > 2:6783153/3‑136 (MQ=255) gg‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTGCCGa > 2:2365445/1‑137 (MQ=255) g‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTGCTGAt > 2:16133172/1‑137 (MQ=255) g‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTGCCGAt > 2:8559499/1‑137 (MQ=255) g‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTGCCGAt > 1:4198386/1‑137 (MQ=255) g‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTGCCGAt > 2:4248616/1‑137 (MQ=255) g‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTGCCGAt > 1:1824262/1‑137 (MQ=255) g‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTGCCGAt > 1:13494565/1‑137 (MQ=255) g‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTGCCGAt > 2:15995127/1‑137 (MQ=255) g‑C‑TT‑GCCC‑GCGAAGGGCTGCAAGGCAGCCCAAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTCTAGCTCCAGAATCAAGCCGCTACACTGGTTTTCCAGCTAGATATGCACATCATCGCTACCGAt > 2:18689635/1‑137 (MQ=255) | TCGAAGAGGATCTGGACATTCGACAGCGGCATTGCAGGTCTCACGAAAATAGCAGTAAACGCTGGGGCCGCTTTGCGGCCCTTCGCGGGCAAGCCCGCTCCTACAAAGGATATGCGTCCCCTGTAGGA‑G‑C‑GGG‑C‑TT‑G‑CC‑GCGAAGGGCTGCAAGGCAGCCCCAAATTGTCGACTACGCGGATCAGCGATCCGGCAGGGTGATGTTCAGCTCCAGAATCGAGCAGCTGCCCTGGTTTTCCAGCTCGATATGCACATCATCGTTGCCGAT > AE015451_phaM1/1932502‑1932769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |