| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AE015451_phaM1 | 3,412,992 | Δ35,612 bp | [PP_3026 CDS (putative Phage recombinase)]–PP_5557 CDS (protein of unknown function) | 47 genes [PP_3026 CDS (putative Phage recombinase)], PP_3027 CDS (conserved protein of unknown function), PP_3028 CDS (conserved protein of unknown function), PP_3029 CDS (DNA cytosine methyltransferase family protein), PP_3030 CDS (conserved exported protein of unknown function), prtN CDS (Transcription regulatory protein PrtN), PP_3032 CDS (DNA‑binding protein Roi‑related protein), PP_5552 CDS (conserved protein of unknown function), PP_5553 CDS (conserved protein of unknown function), PP_3033 CDS (putative transcriptional repressor_ CI_C2 family), PP_3034 CDS (putative Regulator protein), PP_3035 CDS (conserved protein of unknown function), PP_5554 CDS (protein of unknown function), PP_3036 CDS (conserved protein of unknown function), PP_5555 CDS (conserved protein of unknown function), PP_3037 CDS (C4‑type zinc finger protein_ DksA_TraR family), PP_3038 CDS (Pyocin R2_PP_ traC domain protein), PP_3039 CDS (conserved protein of unknown function), PP_3040 CDS (Pyocin R2_PP_ holin), PP_3041 CDS (conserved protein of unknown function), PP_3042 CDS (putative Terminase_ large subunit), PP_3043 CDS (conserved protein of unknown function), PP_3044 CDS (Phage portal protein_ lambda family), PP_3045 CDS (putative ClpP protease), PP_3046 CDS (conserved protein of unknown function), PP_3047 CDS (conserved protein of unknown function), PP_3048 CDS (conserved protein of unknown function), PP_3049 CDS (conserved protein of unknown function), PP_3050 CDS (conserved protein of unknown function), gpV CDS (Pyocin R2_PP_ tail spike protein), PP_3052 CDS (conserved protein of unknown function), gpW CDS (Pyocin R2_PP_ baseplate protein), gpJ CDS (Pyocin R2_PP_ baseplate_tail fiber protein), gpI CDS (Pyocin R2_PP_ tail formation protein), PP_3056 CDS (putative Pyocin R2_PP_ tail fiber protein), PP_3057 CDS (putative pectinesterase), PP_3058 CDS (conserved protein of unknown function), PP_3059 CDS (putative tail sheath protein), PP_3060 CDS (putative tail sheath protein), PP_3061 CDS (conserved protein of unknown function), PP_3062 CDS (putative Pyocin R2_PP_ tail length determination protein), gpU CDS (Pyocin R2_PP_ tail formation protein), PP_3064 CDS (Phage tail protein), gpD CDS (Pyocin R2_PP_ tail formation), PP_3066 CDS (Pyocin R2_PP_ lytic enzyme), PP_5556 CDS (putative bacteriophage lysis protein), PP_5557 CDS (protein of unknown function) |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451_phaM1 | 3412992 | 3448603 | 35612 | 907 [0] | [0] 906 | [PP_3026 CDS (putative Phage recombinase)]–PP_5557 CDS (protein of unknown function) | [PP_3026 CDS (putative Phage recombinase)],PP_3027 CDS (conserved protein of unknown function),PP_3028 CDS (conserved protein of unknown function),PP_3029 CDS (DNA cytosine methyltransferase family protein),PP_3030 CDS (conserved exported protein of unknown function),prtN CDS (Transcription regulatory protein PrtN),PP_3032 CDS (DNA‑binding protein Roi‑related protein),PP_5552 CDS (conserved protein of unknown function),PP_5553 CDS (conserved protein of unknown function),PP_3033 CDS (putative transcriptional repressor_ CI_C2 family),PP_3034 CDS (putative Regulator protein),PP_3035 CDS (conserved protein of unknown function),PP_5554 CDS (protein of unknown function),PP_3036 CDS (conserved protein of unknown function),PP_5555 CDS (conserved protein of unknown function),PP_3037 CDS (C4‑type zinc finger protein_ DksA_TraR family),PP_3038 CDS (Pyocin R2_PP_ traC domain protein),PP_3039 CDS (conserved protein of unknown function),PP_3040 CDS (Pyocin R2_PP_ holin),PP_3041 CDS (conserved protein of unknown function),PP_3042 CDS (putative Terminase_ large subunit),PP_3043 CDS (conserved protein of unknown function),PP_3044 CDS (Phage portal protein_ lambda family),PP_3045 CDS (putative ClpP protease),PP_3046 CDS (conserved protein of unknown function),PP_3047 CDS (conserved protein of unknown function),PP_3048 CDS (conserved protein of unknown function),PP_3049 CDS (conserved protein of unknown function),PP_3050 CDS (conserved protein of unknown function),gpV CDS (Pyocin R2_PP_ tail spike protein),PP_3052 CDS (conserved protein of unknown function),gpW CDS (Pyocin R2_PP_ baseplate protein),gpJ CDS (Pyocin R2_PP_ baseplate_tail fiber protein),gpI CDS (Pyocin R2_PP_ tail formation protein),PP_3056 CDS (putative Pyocin R2_PP_ tail fiber protein),PP_3057 CDS (putative pectinesterase),PP_3058 CDS (conserved protein of unknown function),PP_3059 CDS (putative tail sheath protein),PP_3060 CDS (putative tail sheath protein),PP_3061 CDS (conserved protein of unknown function),PP_3062 CDS (putative Pyocin R2_PP_ tail length determination protein),gpU CDS (Pyocin R2_PP_ tail formation protein),PP_3064 CDS (Phage tail protein),gpD CDS (Pyocin R2_PP_ tail formation),PP_3066 CDS (Pyocin R2_PP_ lytic enzyme),PP_5556 CDS (putative bacteriophage lysis protein),PP_5557 CDS (protein of unknown function) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451_phaM1 | = 3412991 | 0 (0.000) | 893 (1.070) | 131/262 | 0.1 | 100% | coding (1/1626 nt) | PP_3026 CDS (putative Phage recombinase) | |
| ? | AE015451_phaM1 | 3448604 = | 0 (0.000) | intergenic (‑472/‑199) | PP_5557 CDS (protein of unknown function)/PP_3067 CDS (conserved protein of unknown function) | –/– | |||||
Only 100 of 913 total aligned reads displayed.
ATCCAGTCATCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/3412853‑3412991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtaCGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACGGGGC > AE015451_phaM1/3448604‑3448739 CCAGTCATCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTA > 2:3590053/1‑137 CAGTCATCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTAC < 2:5730078/137‑1 CAGTCATCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTAC < 1:10514975/137‑1 CAGTCATCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTAC < 2:13718795/137‑1 TCATCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGC < 1:4706110/137‑1 TCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGG > 2:15119677/1‑137 GATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAG < 1:3187592/137‑1 ATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGT < 1:288423/137‑1 ATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGT < 1:1995329/137‑1 TGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTT > 2:12069458/1‑137 TGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTT < 2:10347311/137‑1 TGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTT < 1:13461915/137‑1 ATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGG < 1:10018975/137‑1 TGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGG > 1:18507655/1‑137 TGTCGTTTGGATCTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGG < 2:3000338/137‑1 GTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGCGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGA > 1:8130104/1‑137 GTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGA > 1:13267110/1‑137 GTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGA > 2:18598278/1‑137 GTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCAAGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGA > 2:4439134/1‑137 TGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAG < 1:9643928/137‑1 TGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAG < 1:18172117/137‑1 TGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAG < 1:18662595/137‑1 TGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAG < 2:5002922/137‑1 ATTTTCAATCCCCAGGCAGCTATGCTGTTGGCGCGCGCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGG < 2:8662782/137‑1 ATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGG < 2:4020433/137‑1 ATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGG < 2:12836367/137‑1 ATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGG < 1:5407312/137‑1 ATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGG < 2:15968447/137‑1 ATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGG < 1:4380806/137‑1 ATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCAGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGT > 1:6427774/1‑137 AGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAG < 2:16643756/137‑1 AGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGT < 2:11699013/137‑1 GCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTG < 1:2480695/137‑1 GCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTG < 2:10079815/137‑1 GGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTG < 2:10631746/137‑1 GGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTG < 2:7663677/137‑1 GCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGG > 1:176153/1‑137 GCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGG > 2:11517137/1‑137 GCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTT > 2:7346811/1‑137 GCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTT > 2:13454830/1‑137 TCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGAT > 2:679603/1‑137 TCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGAT > 2:13120954/1‑137 TCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGAT > 1:16385170/1‑137 GGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAA > 1:14638333/1‑137 TCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATAC > 2:1113647/1‑137 CCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACG > 1:12730197/1‑137 CGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGA < 1:17279389/137‑1 AAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTNCGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATC < 1:15300775/137‑1 AGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCA > 2:2486565/1‑137 GGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCAT < 1:8584829/137‑1 GGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCAT < 2:2073221/137‑1 cATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTCAGAAAAATACGATCATCATAAAT > 1:1109056/2‑137 AATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAAT > 1:9257309/1‑137 AATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAAT > 1:5730200/1‑137 AATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAAT > 2:14730389/1‑137 AATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCAGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAAT > 2:16996438/1‑137 TATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCT < 1:6636844/137‑1 TATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCT < 2:847699/137‑1 ATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTT > 2:4763439/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAG > 1:4873382/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAG > 2:1725156/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAG > 2:4132509/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAG > 2:526028/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAG > 1:7165093/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAG > 2:8024568/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTG < 1:4054523/77‑1 TGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTATGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGC > 2:5597224/1‑137 GGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCT > 1:14100565/1‑137 GGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCT > 2:15803907/1‑137 GGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCT > 2:8994796/1‑137 GGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCT > 1:15628589/1‑137 GGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCT > 1:3651143/1‑137 GCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTT > 1:5221431/1‑137 CTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTT > 2:15521848/1‑137 CTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTT > 2:6447866/1‑137 CTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTT > 2:14078822/1‑137 CTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTT > 2:12573519/1‑137 CTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTT > 2:7002173/1‑137 TTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTC > 1:17871788/1‑137 TTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTC > 1:16740761/1‑137 TTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCC < 1:16013827/137‑1 TTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCC < 2:3093366/137‑1 TTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCC > 1:11652612/1‑137 TTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCC < 1:12433519/137‑1 TTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCC < 2:10930762/137‑1 TTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCC < 1:68586/137‑1 TCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCG > 2:17784186/1‑137 GGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTG > 2:5998697/1‑137 AATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAA < 2:9465938/137‑1 AATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAA < 2:12289210/137‑1 TCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATG > 2:11363242/1‑137 CAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGA < 2:14466595/137‑1 CAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGA < 1:7653385/137‑1 GGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACG < 2:16227159/137‑1 GGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACG < 1:9543855/137‑1 GGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACG < 1:1703243/137‑1 GGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACG < 1:101482/137‑1 GTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACGGG < 1:13756674/137‑1 TACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACGGGG > 1:3405530/1‑137 ACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGAAGGGGC > 2:18187382/1‑137 ATCCAGTCATCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/3412853‑3412991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtaCGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACGGGGC > AE015451_phaM1/3448604‑3448739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |