| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AE015451_phaM1 | 4,919,155 | Δ69,176 bp | [PP_4328 CDS (conserved protein of unknown function)]–[ycgR CDS (Flagellar brake protein YcgR)] | 68 genes [PP_4328 CDS (conserved protein of unknown function)], [PP_4329 CDS (FlhB domain protein)], PP_4330 CDS (putative toxin‑related protein), PP_4331 CDS (conserved protein of unknown function), PP_4332 CDS (Chemotaxis protein CheW), PP_4333 CDS (CheW domain protein), PP_4334 CDS (ParA family protein), PP_4335 CDS (flagellar motor protein), PP_4336 CDS (flagellar motor rotation protein), cheBA CDS (chemotaxis response regulator protein‑glutamate methylesterase of group 1 operon), cheA CDS (Chemotaxis histidine kinase CheA), cheZ CDS (Protein phosphatase CheZ), cheY CDS (response regulator for chemotactic signal transduction), fliA CDS (RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons), PP_4342 CDS (flagellar synthesis regulator_ putative ATPase), flhF CDS (Flagellar biosynthesis protein FlhF), flhA CDS (flagellar export pore protein), PP_4345 CDS (Transcriptional regulator_ GntR family), ddlA CDS (D‑alanine‑‑D‑alanine ligase A), PP_4348 CDS (putative Cystathionine beta‑lyase), PP_4349 CDS (conserved protein of unknown function), PP_4350 CDS (Aminotransferase_ class V_ NifS_IscS family), PP_5673 CDS (putative D‑alanine‑‑D‑alanine ligase), flhB CDS (flagellin export apparatus_ substrate specificity protein), fliR CDS (Flagellar biosynthetic protein fliR), fliQ CDS (flagellar export apparatus subunit), fliP CDS (flagellar export apparatus subunit), fliO CDS (Flagellar protein FliO), fliN CDS (C‑ring protein of the flagellar basal body), fliM CDS (flagellar synthesis_ switching and energizing component), fliL CDS (Flagellar protein FliL), fliK CDS (Flagellar hook‑length control protein FliK), PP_4362 CDS (conserved protein of unknown function), PP_4363 CDS (Sensor histidine kinase_response regulator), PP_4364 CDS (putative Anti‑sigma F factor antagonist), fliJ CDS (Flagellar protein FliJ), fliI CDS (flagellum‑specific ATP synthase), fliH CDS (Flagellar assembly protein FliH), fliG CDS (flagellar motor switch protein), fliF CDS (Flagellar M‑ring protein), fliE CDS (Flagellar hook‑basal body complex protein FliE), atoC CDS (two component system AtoC DNA‑binding transcriptional activator), fleS CDS (Sensory box histidine kinase FleS), fleQ CDS (Transcriptional regulator FleQ), fliT CDS (flagellar protein), fliS CDS (flagellar chaperone_ inhibits premature FliC assembly), fliD CDS (flagellar filament capping protein), PP_4377 CDS (putative Flagellin FlaG), fliC CDS (flagellin_ filament structural protein), PP_4379 CDS (Beta‑ketoacyl‑acyl‑carrier‑protein synthase I), flgL CDS (Flagellar hook‑associated protein FlgL), flgK CDS (Flagellar hook‑associated protein FlgK), flgJ CDS (Peptidoglycan hydrolase FlgJ), flgI CDS (Flagellar P‑ring protein), flgH CDS (Flagellar L‑ring protein), flgG CDS (flagellar basal‑body rod protein FlgG), flgF CDS (flagellar basal‑body rod protein FlgF), PP_4387 CDS (conserved exported protein of unknown function), flgE CDS (Flagellar hook protein FlgE), flgD CDS (Flagellar basal‑body rod modification protein FlgD), flgC CDS (flagellar basal‑body rod protein FlgC), flgB CDS (flagellar basal‑body rod protein FlgB), cheR CDS (chemotaxis protein methyltransferase), PP_4393 CDS (putative chemotaxis protein), flgA CDS (flagella basal body P‑ring formation protein), flgM CDS (Negative regulator of flagellin synthesis FlgM), PP_4396 CDS (conserved protein of unknown function), [ycgR CDS (Flagellar brake protein YcgR)] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451_phaM1 | 4919155 | 4988330 | 69176 | 626 [0] | [0] 630 | [PP_4328 CDS (conserved protein of unknown function)]–[ycgR CDS (Flagellar brake protein YcgR)] | [PP_4328 CDS (conserved protein of unknown function)],[PP_4329 CDS (FlhB domain protein)],PP_4330 CDS (putative toxin‑related protein),PP_4331 CDS (conserved protein of unknown function),PP_4332 CDS (Chemotaxis protein CheW),PP_4333 CDS (CheW domain protein),PP_4334 CDS (ParA family protein),PP_4335 CDS (flagellar motor protein),PP_4336 CDS (flagellar motor rotation protein),cheBA CDS (chemotaxis response regulator protein‑glutamate methylesterase of group 1 operon),cheA CDS (Chemotaxis histidine kinase CheA),cheZ CDS (Protein phosphatase CheZ),cheY CDS (response regulator for chemotactic signal transduction),fliA CDS (RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons),PP_4342 CDS (flagellar synthesis regulator_ putative ATPase),flhF CDS (Flagellar biosynthesis protein FlhF),flhA CDS (flagellar export pore protein),PP_4345 CDS (Transcriptional regulator_ GntR family),ddlA CDS (D‑alanine‑‑D‑alanine ligase A),PP_4348 CDS (putative Cystathionine beta‑lyase),PP_4349 CDS (conserved protein of unknown function),PP_4350 CDS (Aminotransferase_ class V_ NifS_IscS family),PP_5673 CDS (putative D‑alanine‑‑D‑alanine ligase),flhB CDS (flagellin export apparatus_ substrate specificity protein),fliR CDS (Flagellar biosynthetic protein fliR),fliQ CDS (flagellar export apparatus subunit),fliP CDS (flagellar export apparatus subunit),fliO CDS (Flagellar protein FliO),fliN CDS (C‑ring protein of the flagellar basal body),fliM CDS (flagellar synthesis_ switching and energizing component),fliL CDS (Flagellar protein FliL),fliK CDS (Flagellar hook‑length control protein FliK),PP_4362 CDS (conserved protein of unknown function),PP_4363 CDS (Sensor histidine kinase_response regulator),PP_4364 CDS (putative Anti‑sigma F factor antagonist),fliJ CDS (Flagellar protein FliJ),fliI CDS (flagellum‑specific ATP synthase),fliH CDS (Flagellar assembly protein FliH),fliG CDS (flagellar motor switch protein),fliF CDS (Flagellar M‑ring protein),fliE CDS (Flagellar hook‑basal body complex protein FliE),atoC CDS (two component system AtoC DNA‑binding transcriptional activator),fleS CDS (Sensory box histidine kinase FleS),fleQ CDS (Transcriptional regulator FleQ),fliT CDS (flagellar protein),fliS CDS (flagellar chaperone_ inhibits premature FliC assembly),fliD CDS (flagellar filament capping protein),PP_4377 CDS (putative Flagellin FlaG),fliC CDS (flagellin_ filament structural protein),PP_4379 CDS (Beta‑ketoacyl‑acyl‑carrier‑protein synthase I),flgL CDS (Flagellar hook‑associated protein FlgL),flgK CDS (Flagellar hook‑associated protein FlgK),flgJ CDS (Peptidoglycan hydrolase FlgJ),flgI CDS (Flagellar P‑ring protein),flgH CDS (Flagellar L‑ring protein),flgG CDS (flagellar basal‑body rod protein FlgG),flgF CDS (flagellar basal‑body rod protein FlgF),PP_4387 CDS (conserved exported protein of unknown function),flgE CDS (Flagellar hook protein FlgE),flgD CDS (Flagellar basal‑body rod modification protein FlgD),flgC CDS (flagellar basal‑body rod protein FlgC),flgB CDS (flagellar basal‑body rod protein FlgB),cheR CDS (chemotaxis protein methyltransferase),PP_4393 CDS (putative chemotaxis protein),flgA CDS (flagella basal body P‑ring formation protein),flgM CDS (Negative regulator of flagellin synthesis FlgM),PP_4396 CDS (conserved protein of unknown function),[ycgR CDS (Flagellar brake protein YcgR)] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451_phaM1 | = 4919154 | 0 (0.000) | 626 (0.730) | 121/270 | 0.3 | 100% | coding (1553/1557 nt) | PP_4328 CDS (conserved protein of unknown function) | |
| ? | AE015451_phaM1 | 4988331 = | 0 (0.000) | intergenic (+1/+93) | ycgR CDS (Flagellar brake protein YcgR)/PP_4398 CDS (Major facilitator family transporter) | –/– | |||||
Only 100 of 626 total aligned reads displayed.
TCGACACCCAGCTTGGCGCGCTGCGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/4919019‑4919154‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCG > AE015451_phaM1/4988331‑4988466 TCGACACCCAGCTTGGCGCGCTGCGCGCGCGCCTGCTGGCCCTGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCT < 2:18512959/137‑1 CACCCAGCTTGGCGCGCTGCGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTC < 1:11289411/137‑1 AGCTTGGCGCGCTGCGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCATGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCG < 2:13934098/137‑1 AGCTTGGCGCGCTGCGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCG > 1:1527286/1‑137 GCGCTGCGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACA > 1:7812070/1‑137 GCGCTGCGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACA > 2:12201342/1‑137 GCGCTGCGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTC < 1:13922619/124‑1 CTGCGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAA < 2:14924815/137‑1 TGCGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAA > 1:12467077/1‑137 CGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCNGCCGCAGGGGNCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAAC > 1:3369262/1‑137 CGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAAC < 2:5534852/137‑1 CGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAAC < 1:10416693/137‑1 CGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAAC < 2:15566792/137‑1 GCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCC < 2:14431147/137‑1 GCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCAC > 2:17653193/1‑137 GCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCAC < 2:1592803/137‑1 GCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACA > 2:10049070/1‑126 GCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACA < 1:10049070/126‑1 tCCTGCTGGCCCTGGGCCTGGAAGTCTGCGACCTGGAGTGCCACCCGTGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCGCGTCGGTCGGTAAAACAGAAAACGCCACCT < 1:17592207/136‑1 GCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTG < 1:15538179/137‑1 TGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCGGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAG < 1:14760285/137‑1 GCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGT > 1:18430212/1‑137 CGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGC < 2:7929824/137‑1 GCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTT > 1:10876100/1‑137 CCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT > 2:1902665/1‑137 CCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT > 2:9377377/1‑137 CCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTT > 1:13127749/1‑137 TGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCA > 2:6866756/1‑137 AGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTG < 2:18292222/137‑1 AGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTG < 2:6300462/137‑1 AGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTG < 2:4523695/137‑1 AGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTG < 2:17405853/137‑1 AGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTG < 1:13390518/137‑1 AGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTG < 2:14658426/137‑1 AGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTG < 1:11882742/137‑1 GGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTT < 1:9724451/137‑1 GCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTT < 1:8340444/137‑1 GCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTT < 2:11706133/137‑1 CGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTC > 2:14040556/1‑137 GACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCT > 2:8628189/1‑137 GACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCAACATGCTGAGGTGGCGTTTTCATTTGTGTTTCT > 2:1362951/1‑137 TGCCACCCGGGCATCCCGCCGCAGGTGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCGCGTCGGTCGGTAAAACAGAAAACGCCACCTGCGGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTG < 2:17931283/137‑1 GCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGG < 1:435434/137‑1 ACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCG < 1:17911411/137‑1 CCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGC < 2:5155228/137‑1 CCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCT < 1:2359953/137‑1 CGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTT < 1:1449336/137‑1 GGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTC > 1:16495123/1‑137 CGCCGCATGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAA < 2:10772766/137‑1 CGCCGCAGGGGCCACGCACACGGATGGAACAGCGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAA < 2:4914018/137‑1 CGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAA < 2:15736423/137‑1 CGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAA < 1:673564/137‑1 CGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAA < 2:10298253/137‑1 CGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAA < 1:293557/137‑1 CGCCGCAGGGGCCACGCACACGGATGAAACAACGCTGGGTGGACGAAACCGCTCGTCGATCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAA > 2:10965561/1‑137 CGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACC > 1:16849037/1‑137 AGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGC > 1:15776686/1‑137 AGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGC > 1:9151088/1‑137 GGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTC > 1:5329447/1‑137 GCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCT < 1:10696456/137‑1 CCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTA > 1:5875836/1‑137 CCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTA > 1:14062616/1‑137 CCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTA > 1:9320993/1‑137 ACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGTTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACA < 2:4196471/137‑1 CACGGATGGAACAACGCTGGGTGGACGAAATCGCTCGTCGGTCGGTAAAACAGAAACCGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGAC < 2:16464771/137‑1 CACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGAC < 1:8447325/137‑1 CACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGAC < 2:7582377/137‑1 CACGGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGAC < 2:16698172/137‑1 GGATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTG < 1:7969492/137‑1 ATGGAACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCT < 1:12641881/137‑1 ACAACGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCT > 1:16021341/1‑137 CGCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAA < 2:13164820/105‑1 GCTGTGTGGACAAAACCGCTCGTCAGTCGGTAAAACAGAAAACGCCGCCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCTACTTGCTGACCTCTTCA < 2:11329312/137‑1 GCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCA < 1:7026981/137‑1 GCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCA < 1:16709982/137‑1 GCTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCA < 2:8255971/137‑1 CTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAG > 2:13367360/1‑137 CTGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAG > 1:8971548/1‑137 TGGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGG > 1:2118521/1‑137 GGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGC > 1:4648053/1‑137 GGGTGGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGC > 2:12285552/1‑137 GGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCT < 2:2477627/137‑1 GGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCT > 1:10204194/1‑137 GGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCT > 1:4966839/1‑137 GGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCT > 1:6267579/1‑137 GGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCT > 2:4829196/1‑137 GGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCT > 2:3499212/1‑137 GGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCT > 1:15002380/1‑137 GGACGAAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTT < 2:5858810/128‑1 AAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCATGCGCCTGTTGC < 2:3050727/137‑1 AAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGC > 2:12794341/1‑137 AAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGC > 1:11041418/1‑137 AAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGC > 2:6050454/1‑137 AAACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGC > 1:6110100/1‑137 AACCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCT < 1:7439377/137‑1 CCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGC < 2:12571071/137‑1 CCGCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGC < 2:9104934/137‑1 GCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGC > 2:3871665/1‑137 GCTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTAACCTCTTCAGGCGCCTGTTGCTGCGC > 2:10560309/1‑137 CTCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCG < 1:5797734/137‑1 TCGACACCCAGCTTGGCGCGCTGCGCGCGCGCCTGCTGGCCCGGGGCCTGGAAGTCGGCGACCTGGAGTGCCACCCGGGCATCCCGCCGCAGGGGCCACGCACACGGATGGAACAACGCTGGGTGGACGAAACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/4919019‑4919154‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCG > AE015451_phaM1/4988331‑4988466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |