| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AE015451_phaM1 | 353,067 | A→G | intergenic (+34/+84) | hisF CDS (Imidazole glycerol phosphate synthase subunit HisF) → / ← cbcV CDS (choline _ betaine _ carnitine ABC transporter ‑ ATP binding subunit) | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451_phaM1 | 353,067 | 0 | A | G | 99.8% | 1804.8 / NA | 481 | intergenic (+34/+84) | hisF CDS (Imidazole glycerol phosphate synthase subunit HisF)/cbcV CDS (choline _ betaine _ carnitine ABC transporter ‑ ATP binding subunit) | –/– |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (221/258); total (222/259) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.63e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 482 total aligned reads displayed.
TGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCAGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGT‑GGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCG > AE015451_phaM1/352934‑353199 | gCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCa > 1:255751/1‑137 (MQ=255) cAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCAca > 1:3346126/1‑136 (MQ=255) cAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACg < 1:16293897/137‑1 (MQ=255) cAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACg < 1:9190042/137‑1 (MQ=255) cAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACg < 1:12208147/137‑1 (MQ=255) aGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGc < 2:2683863/137‑1 (MQ=255) ggTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGc > 1:7693950/1‑128 (MQ=255) gTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTc < 2:2300315/137‑1 (MQ=255) gTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTc < 2:5652897/137‑1 (MQ=255) gTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTc > 2:13369792/1‑137 (MQ=255) gTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGACACGCCCGCTc < 2:4317846/137‑1 (MQ=255) tGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGTGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTACAGCCCTTCGCGGGCAAGCCCGATCCcac > 2:9288935/1‑137 (MQ=255) ggcggcCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCcaca < 1:6974618/137‑1 (MQ=255) ggcggcCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCcaca < 2:8922935/137‑1 (MQ=255) ggcggcCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCcaca < 2:17966904/137‑1 (MQ=255) ggcggcCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCcaca < 1:2143351/137‑1 (MQ=255) cggcCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAga < 1:18074106/137‑2 (MQ=255) gcCAGCATCTTCCACTTTGGCGAGTCCACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGtt > 2:4608055/1‑137 (MQ=255) gcCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGtt < 1:8379639/137‑1 (MQ=255) cAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTg < 2:7430316/137‑1 (MQ=255) cAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCGGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTg < 2:2979599/137‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCTGAGGCCAATGCCTACATGACTTCGCGCGGGATCGTCGTTCGCTGATCCATTGATCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt < 2:18145592/137‑1 (MQ=38) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt < 1:416446/137‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt < 1:17955221/137‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt < 1:16070353/137‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt < 2:5265443/137‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt < 1:13580855/137‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt < 2:11700820/137‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt < 2:14792070/137‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt < 1:11792175/137‑1 (MQ=255) gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt < 2:13291700/137‑1 (MQ=255) gCATCTTCCACTTCGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTGTGCt < 2:9917819/137‑1 (MQ=255) gCATCTGCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGTGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt < 2:953643/137‑1 (MQ=255) cATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGACCGCTCCCAAAAGTTTGCTg > 2:12609468/1‑137 (MQ=255) aTCTTCCACTTTGGCGAGTACATAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTTGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 2:2121971/137‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCTGGGGTCAAGGCCTACGTGGCTTCGCGCGGGGTCGGCGTTCGCTGATCCATTGACCGGGGCGGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTGGCTga < 2:16772317/137‑1 (MQ=37) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTTGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGTTTTGCAGCTCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 1:12830327/137‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 1:3740855/137‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 2:11257871/137‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 2:13006243/137‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 2:851518/137‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 1:14430457/137‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 1:8080513/137‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 1:17458894/137‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 2:14080455/137‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 1:5506720/137‑1 (MQ=255) aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCCGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 2:15040433/137‑1 (MQ=255) aTCTTCCACGTTTGCGAGTACACATTGCCGGAGGCCAAGGCCTCCATGGCTTCGCGCGTGATCGCCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCACTCCCACAGGTTTGCTga < 2:15401134/137‑1 (MQ=37) cTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTgaga < 1:7869407/137‑1 (MQ=255) tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGAtc < 2:2512536/137‑1 (MQ=255) cACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGAtctc < 1:4474975/137‑1 (MQ=255) cACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGAtctc < 2:7203687/137‑1 (MQ=255) cACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGAtctc < 2:3592045/137‑1 (MQ=255) aCTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCCCAGGTTTGGTGAGGTctct > 1:9657755/1‑137 (MQ=255) aCTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCAAAGGTTTGCTGGGGTctct > 2:1097988/1‑137 (MQ=255) ggCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCCCCCCCACAGGTTTGCTGAGATCTCTGT‑ggg > 1:13011620/1‑137 (MQ=255) cGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga > 1:10290940/1‑123 (MQ=255) cGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCAAAGGTTTGGTGAAATCTCTGT‑GGGAg > 1:14057348/1‑137 (MQ=255) cGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACACCCCCCCCCCCAAAGTTGGTGAGGCCTCTGT‑TGGAg > 1:367709/1‑137 (MQ=255) gAGTACACAGTGCCGGAGGCCAAGGCATACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACGGGTTTGCTGAGATCTCTGT‑GGGAGc > 2:4052161/1‑137 (MQ=255) gCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGACCACCCCCACAAGTTTGCTGAGATCTCCGT‑GGGAGAGGGCATGCCcg > 1:18413252/1‑137 (MQ=38) gCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGACCGACCACTCCCCCAGGTTTGCTGGAAGCTCTGT‑GGGAGCGGGCATGCCcg > 1:10878258/1‑137 (MQ=255) cGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGTACGCCCGCTCACACAGGTTTGCTGAGATATCTGT‑GGGAGCGGGCGTGCCcgca > 2:6885747/1‑136 (MQ=39) gAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTTAGATCTCTGT‑GGGAGCGGGCGTGCCCGCGaa > 2:18370875/1‑137 (MQ=255) gAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGGTTTCTGAGGTCTCTGT‑TGGAGCGGGTGTGCCCGCGaa > 2:5079310/1‑137 (MQ=38) gAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACACCCGCTCCCACAAGTTTTATGAGATCTCTGT‑GGGAGAGGGTGTGCCCGCGaa > 1:17071538/1‑137 (MQ=38) gAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACACCCACTCCCACAAGGTTGGTGAGGCCTCTGT‑GGGGGCGGGAGTGCCCACGaa > 1:6292485/1‑137 (MQ=37) aGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGGTCTCTGT‑GGGAGCGGGCGTGCCCGCGAAg > 2:3408224/1‑137 (MQ=255) aGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCCGT‑GGGAGCGGGCGTGCCCGCGAAg > 1:13845514/1‑137 (MQ=255) gCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCt > 1:11487334/1‑102 (MQ=255) ggCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGT‑GGGAGCGGGCGTGCCCGCGAAGGGCcgcg > 2:18965762/1‑137 (MQ=255) tGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGTACGCCCGCTCCCACACGTTTGTTTAGGGTTCTTT‑GGGGGCCGGCGTGCCCGCGAAGGGACGCAAAgaaggc > 1:14961228/1‑132 (MQ=25) ggCTTCGCGCGGGATCGTCGTTCGCTGATCCCTTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACCGGTTTGCTGAGATTTCTGT‑GGGAGCGGGCGTGTCCAAGAAGGGCCGCGAAGTGGacc > 2:10160413/1‑137 (MQ=37) cgcgcgGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTTCTGAGGTCTCTGT‑GGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAAtt > 2:12112765/1‑137 (MQ=255) cgcgcgGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGGTCTCTTT‑GGGAGCGGGCGTGCCCGCGAAGGGTCGCGAAGCGGCCCCCAtt > 1:13331163/1‑137 (MQ=38) cgcgcgGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGGTCTCTGT‑GGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAAtt > 2:8608238/1‑137 (MQ=255) cgcgcgGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGGTCTCTGT‑GGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAAtt > 2:14299065/1‑137 (MQ=255) cgcgcgGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGT‑GGGAGCGGGCATGCCCACAAAGGGCCACGAAGCGGCCCCAAtt > 2:6400442/1‑137 (MQ=38) gcgGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGc > 1:15391227/1‑61 (MQ=255) gcgGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCAAAGGTTTGCTGAGATCTCTGT‑GGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCt > 2:1642847/1‑137 (MQ=255) gggATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGGAAGACCCCCCCCCCAAGGTTTTTGGGGGCTCTGT‑GGGAGAGGGGGTGCCCACAAAAGGCCACAAAACGGACCCAActtcttt > 1:110417/1‑136 (MQ=255) gggATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTga < 1:7282140/80‑1 (MQ=255) gggATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCCCTGT‑GGGAGCAGGCGTGCCCGCGAAGGACCGCGAAGCGGCCCAAATTGCTTc > 2:7602888/1‑137 (MQ=38) ggATCGTCGTTCGCGGACCGGTGCACGGGGGCGGTTTTGCAGCCCTGGGAGGACACTCCCGCCCACAAGGGTTTGTGGAGATCT‑TGTGGGGAGGGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCa < 1:10013827/137‑1 (MQ=12) cATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGT‑GGGAGTGGGCGTGCCCGCGAAGGGCCTCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagc > 2:16222436/1‑137 (MQ=255) gttGACTGGGGCTGTTTTACATCCTTTCGCGGGCACGCCCGCTCCCACGGGTTTGTGGAGATCTTTGG‑GGGAGTGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagca < 2:11846675/136‑1 (MQ=37) atggACGGGGGTTGTTTGGCAGCCTTTGGGGGGCACGCCCTCTCCCACGGGTTTGTGGAGCCCTTTGT‑GGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagca < 1:16663346/134‑1 (MQ=21) tGACTGGGGTTGTTTTGAAGCCTTTCGTGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCGGG‑GGGAGTGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagcagc < 2:18732576/137‑1 (MQ=37) tGACTGGGGCTGCTTTGCATCCCTTCGCGGGCACGCCCACTCCCACGGTTTTGCTGAGATCTTTGG‑GGGGGGGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagcagc < 2:6144167/137‑1 (MQ=37) gctgctTTGCAGCCCTTCGCGGACACGCCCGCTCCCACAGGTTTCCTGAAACCTCTTT‑GGAGGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTa < 2:8150236/137‑1 (MQ=38) tgctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGT‑GGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCCACCGTGGTTCTTGCCAAGCAACGCGTGGTaaa > 2:10582835/1‑137 (MQ=255) tgctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGGTTGTTGAGATCTCTGT‑GGGAGCGGGCGTGCCCGCGGAGGGCCACGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTaaa > 2:17043834/1‑137 (MQ=38) ctTTGCGTCCCTTCGTGGGCACGCCCNCTCCCACAGGTTTGCGGAGCTCTTTGT‑GGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGc < 1:18741210/137‑1 (MQ=38) ctTTGCAGCCCTTTGCGGGCACACCCGCTCCCACAGGTTTGCTGAGATCTCTTT‑GGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGc < 2:15289029/137‑1 (MQ=255) ttGCATCCCTTCGTGGGCACGCCTGCCCCCACAGGTTTGCGGAGGCCTTTGT‑GGGAGTGGGCGGGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTc < 2:17554537/137‑1 (MQ=37) tGCAGCCCTTCGCGGGCACACCCGCTCCCAAAGGTTTGCTGAGATCTCTGT‑GGGAACGGGCGTGCCCACGAAGGGCCACGAAGCGGCCCCAATTGCTTCCACCGTGGTTCTTGCCGAACAGCGCGTGGTAAAGTTCg > 2:17470670/1‑137 (MQ=255) cctcTTCGGGGGAACGCCCGCTCCCAAGGGTTTGTGGAGATTTTTGT‑GGGGGTGGTTGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTAt < 1:3481337/134‑1 (MQ=255) cccTTCGCGGGCACACCCGCTCCCACAAGGTTTCTGAGAGCTCTGT‑GGGAGCGGGAGTGCCCGCGAAGGGACACGAAACGGCCCCAACTGCTTCAAACATGGTTCTTGCCGAGCAGCGCGGGGTAAAGCTCGGTATc > 2:14621454/1‑137 (MQ=255) ccTTCGCGGACACTCCAGCTCCCACGGGTTGGTGGAGCTTTTTTG‑GGGAGGGGGTGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATcc < 1:8673056/137‑1 (MQ=25) tCGCGGGCACGCCTATTCCCACAGGTTTACGGAAACCTCTGT‑GGGAGCGGTCTTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCg < 1:2978642/137‑1 (MQ=37) | TGCCAGCGCGGTGCTGGCGGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCAGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGT‑GGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCG > AE015451_phaM1/352934‑353199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |