| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AE015451_phaM1 | 5,681,415 | +CGGG | intergenic (‑133/+71) | PP_4986 CDS (Channel protein_ hemolysin III family) ← / ← PP_4987 CDS (putative Chemotaxis protein) | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451_phaM1 | 5,681,415 | 1 | . | C | 97.9% | 356.7 / 1.1 | 98 | intergenic (‑133/+71) | PP_4986 CDS (Channel protein_ hemolysin III family)/PP_4987 CDS (putative Chemotaxis protein) | –/– |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base C (70/24); total (73/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
| * | AE015451_phaM1 | 5,681,415 | 2 | . | G | 97.9% | 356.9 / 0.4 | 98 | intergenic (‑133/+71) | PP_4986 CDS (Channel protein_ hemolysin III family)/PP_4987 CDS (putative Chemotaxis protein) | –/– |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (70/25); total (73/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | AE015451_phaM1 | 5,681,415 | 3 | . | G | 98.0% | 371.5 / 0.4 | 98 | intergenic (‑133/+71) | PP_4986 CDS (Channel protein_ hemolysin III family)/PP_4987 CDS (putative Chemotaxis protein) | –/– |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (71/25); total (73/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | AE015451_phaM1 | 5,681,415 | 4 | . | G | 98.0% | 367.0 / 0.4 | 98 | intergenic (‑133/+71) | PP_4986 CDS (Channel protein_ hemolysin III family)/PP_4987 CDS (putative Chemotaxis protein) | –/– |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (71/25); total (73/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 122 total aligned reads displayed.
ACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GC‑‑‑‑GCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTT > AE015451_phaM1/5681279‑5681529 |||| aCATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gc < 1:15257708/137‑1 (MQ=255)aCATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gc < 1:11594770/137‑1 (MQ=255)aCATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gc < 1:1768986/137‑1 (MQ=255)aCATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gc < 1:5983412/137‑1 (MQ=255)aCATGCAAACACAGACCTCCTGAGGTGGGCTGGGTGCCTGTTTTGATGCTGATGGCTTCGTTCTTTGTGGTAGCGGCCTTGTGTCGCGAAAGTGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gc < 2:12208586/137‑1 (MQ=255) aTGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccg > 2:4831475/1‑135 (MQ=255) aTGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccg > 2:15014535/1‑135 (MQ=255) cAAACGCAGACCTCCTTAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGTGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccgggg < 1:11998408/137‑6 (MQ=38) cAAACACAGACCTCCTTAGGTGGGCTGGGTTCCTGTTTTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccgggg < 2:11834377/137‑6 (MQ=255) cAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCATGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccgggg < 1:8101699/137‑6 (MQ=255) cAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccgggg < 1:8769964/137‑6 (MQ=255) cAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccgggg < 1:15091565/137‑6 (MQ=255) cAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccgggg < 1:8077905/137‑6 (MQ=255) cAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccgggg < 2:14981582/137‑6 (MQ=255) cAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccgggg < 1:4831475/137‑6 (MQ=255) cAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccgggg < 1:11998407/137‑6 (MQ=255) cAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccgggg < 2:11219626/137‑6 (MQ=255) cAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gccgggg < 1:379443/137‑6 (MQ=255) ctGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGccc < 2:6267486/137‑1 (MQ=37) taGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 2:5227424/136‑1 (MQ=37) gAGTTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAATGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 2:3778166/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 1:8034000/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 1:621638/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 1:10073620/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 2:1674111/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 1:9921314/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 2:10544390/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 1:4263801/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 2:12477095/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 2:4253505/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 2:8501218/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 1:13299336/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 2:5652837/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 1:16377854/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 1:14657894/137‑1 (MQ=37) gAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCCTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 2:12682420/137‑1 (MQ=37) gAGGGGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTNCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTa < 1:16289006/137‑1 (MQ=37) aGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTAt > 1:2306190/1‑137 (MQ=37) cTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCTaca > 2:10490418/1‑137 (MQ=37) gATGGCTTCGTTCTTTGTGGGAGCGTCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGa > 1:16087255/1‑137 (MQ=25) cggaattGTGTCTAGAAAGGGGCGCGAAGCGGCACCAAGCTTTCATTGCCACTGCCGGAAAC‑‑‑‑GCCAGGGATGCTGCGAAGACCTCTCATGACAAAAGGCCACCCCCACTCCAGAACACCCAGACCTACGCCCcacac > 2:14118166/6‑136 (MQ=255) tCGCGAAAGGGGCGCGAAGCGGACCCAGGCTTTCATTGCCAATGCATGAACCACCGGG‑‑‑‑GTTGCTGCACAGCCCCACCGCGACAAAAGGACGCTCCCACTCCAGAACCCCAAGCCCTGCGCCCCACATCCTAAACAAg > 2:12145880/1‑137 (MQ=255) gAAAGGGGCGCGAAGTGGCCCCAGGCTTTCATTGCCACTGCGTGAACC‑‑‑‑GCTGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCa < 1:947837/137‑1 (MQ=38) aaGGGGCGCGGAGCGGCCCCAGGCTTTCATTGCCACTGCATGACCC‑‑‑‑GCCGGGGCTGCTGCGAAGCCCTATCTCGACACAAGGTCGATCCAACTCCAGACCACCAGGCCCTGCGCCTCACCCCCTAACCAAGGTCAgg > 2:8399527/1‑137 (MQ=255) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gc < 1:11364271/48‑1 (MQ=255) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACc‑‑‑‑gc > 2:11364271/1‑48 (MQ=255) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGTTGCGCAGCCCTATCGCGACATAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:806606/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:8484896/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:2045007/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:8546338/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:15202188/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:13230526/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:1343742/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:1343772/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:16351871/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:4960131/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:13794815/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:6660494/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:14195869/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:4755846/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 1:11758237/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 2:11312075/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 1:11913436/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 1:9823604/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 1:9276284/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 1:12102297/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 1:8481380/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 1:14392284/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 1:5711473/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 1:13375830/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAgg > 1:13687228/1‑137 (MQ=38) aaGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCAGGGGCTGCTGCGCATCCCTATCGCGACACAAGGCCGCTCCCGCTCCAAACCACCAGGCCCTGCGCCTCCCATCCTAACCAAGGTCAgg > 2:7144314/1‑137 (MQ=255) ggggCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGtt > 1:16736644/1‑137 (MQ=38) gcgcGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCATGCCCTGCGCCTCACATCCTAACCAAGATCAGGTTGCa > 2:5224920/1‑137 (MQ=38) gcgcGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGTGCCTAACATCCTAACCAAGGTCAGGTTGCa > 2:5224955/1‑137 (MQ=38) gcgcGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGATCAGGTTGCa > 2:4804004/1‑137 (MQ=38) gagcgAAGGGGCCCCAGGCTGTCGTTGCAAATGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCAATATCGCGACACAAGACCGCTCCCACTCCAGACCACCAGGCCCTGCGCATCACATCCTAACCAAGGCCAGATTGCa > 2:2878184/3‑137 (MQ=255) gcgAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGa > 2:14516706/1‑137 (MQ=38) gAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATc > 1:13212524/1‑137 (MQ=38) gAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATc > 1:13212495/1‑137 (MQ=38) gAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATc > 2:11815334/1‑137 (MQ=38) aGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCcg > 2:15260894/1‑137 (MQ=38) cGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCcgcg > 2:12522762/1‑137 (MQ=38) ccAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACg > 2:11296005/1‑137 (MQ=38) ccAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACg > 2:6527089/1‑137 (MQ=38) tttCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAg > 1:1463502/1‑137 (MQ=38) tttCATTGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAg > 1:8760439/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 1:10849907/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 1:13034994/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 2:7892136/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 2:7264514/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 1:8212937/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 1:6677346/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 1:5695810/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 2:5514710/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 1:3996619/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 1:3558060/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 2:391066/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 2:5123477/1‑137 (MQ=38) ttGCCACTGCATGAACC‑‑‑‑GCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCttt > 1:3558033/1‑137 (MQ=38) |||| ACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACC‑‑‑‑GC‑‑‑‑GCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTT > AE015451_phaM1/5681279‑5681529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |