| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AE015451_phaM1 | 1,738,086 | Δ40,059 bp | [PP_1532 CDS (putative Phage integrase)]–[PP_1586 CDS (putative Killer protein)] | 60 genes [PP_1532 CDS (putative Phage integrase)], PP_1533 CDS (putative Excisionase), PP_1534 CDS (conserved protein of unknown function), PP_1535 CDS (putative Methyltransferase), PP_1536 CDS (conserved protein of unknown function), PP_1537 CDS (conserved protein of unknown function), PP_5472 CDS (conserved exported protein of unknown function), PP_1538 CDS (conserved protein of unknown function), PP_1539 CDS (conserved protein of unknown function), PP_1540 CDS (conserved protein of unknown function), PP_1541 CDS (putative Methyltransferase), PP_1542 CDS (conserved protein of unknown function), PP_1543 CDS (conserved protein of unknown function), PP_1544 CDS (conserved protein of unknown function), PP_1545 CDS (conserved protein of unknown function), PP_1546 CDS (conserved protein of unknown function), PP_5473 CDS (putative transcriptional regulator_ LuxR family), PP_5474 CDS (conserved protein of unknown function of phage origin), PP_1548 CDS (conserved protein of unknown function), PP_5744 CDS (conserved protein of unknown function_ phage origin), PP_1549 CDS (Transcriptional regulator_ Cro_CI family), PP_1550 CDS (Transcriptional regulator_ Cro_CI family), PP_1551 CDS (putative Phage replication protein O), PP_1552 CDS (putative Phage replication protein), PP_1553 CDS (conserved protein of unknown function), PP_1554 CDS (conserved protein of unknown function), PP_1555 CDS (putative Phage integrase), PP_1556 CDS (conserved protein of unknown function), PP_1557 CDS (conserved protein of unknown function), PP_1558 CDS (conserved protein of unknown function), PP_1559 CDS (Holin), PP_1560 CDS (conserved protein of unknown function), PP_1561 CDS (putative Phage holin), PP_1562 CDS (putative Phage terminase_ small subunit), PP_1563 CDS (putative Phage terminase_ large subunit), PP_1564 CDS (conserved exported protein of unknown function), PP_1565 CDS (Phage portal protein_ HK97 family), PP_1566 CDS (Peptidase U35), PP_1567 CDS (Capsid protein), PP_1568 CDS (conserved protein of unknown function), PP_1569 CDS (conserved protein of unknown function), PP_1570 CDS (Head‑tail adaptor), PP_1571 CDS (conserved protein of unknown function), PP_1572 CDS (conserved protein of unknown function), PP_1573 CDS (putative Major tail protein), PP_1574 CDS (conserved protein of unknown function), PP_1575 CDS (conserved protein of unknown function), PP_1576 CDS (putative Immunity protein), PP_1577 CDS (Phage tail tape meausure protein_ lambda family), PP_1578 CDS (conserved protein of unknown function), PP_5475 CDS (conserved protein of unknown function), PP_1579 CDS (conserved protein of unknown function), PP_1580 CDS (conserved protein of unknown function), PP_1581 CDS (BNR domain protein), PP_1582 CDS (conserved protein of unknown function), PP_1583 CDS (putative Structural protein P5), PP_1584 CDS (conserved protein of unknown function), PP_5476 CDS (conserved protein of unknown function), PP_1585 CDS (putative Antidote protein), [PP_1586 CDS (putative Killer protein)] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451_phaM1 | 1738086 | 1778144 | 40059 | 906 [0] | [0] 906 | [PP_1532 CDS (putative Phage integrase)]–[PP_1586 CDS (putative Killer protein)] | [PP_1532 CDS (putative Phage integrase)],PP_1533 CDS (putative Excisionase),PP_1534 CDS (conserved protein of unknown function),PP_1535 CDS (putative Methyltransferase),PP_1536 CDS (conserved protein of unknown function),PP_1537 CDS (conserved protein of unknown function),PP_5472 CDS (conserved exported protein of unknown function),PP_1538 CDS (conserved protein of unknown function),PP_1539 CDS (conserved protein of unknown function),PP_1540 CDS (conserved protein of unknown function),PP_1541 CDS (putative Methyltransferase),PP_1542 CDS (conserved protein of unknown function),PP_1543 CDS (conserved protein of unknown function),PP_1544 CDS (conserved protein of unknown function),PP_1545 CDS (conserved protein of unknown function),PP_1546 CDS (conserved protein of unknown function),PP_5473 CDS (putative transcriptional regulator_ LuxR family),PP_5474 CDS (conserved protein of unknown function of phage origin),PP_1548 CDS (conserved protein of unknown function),PP_5744 CDS (conserved protein of unknown function_ phage origin),PP_1549 CDS (Transcriptional regulator_ Cro_CI family),PP_1550 CDS (Transcriptional regulator_ Cro_CI family),PP_1551 CDS (putative Phage replication protein O),PP_1552 CDS (putative Phage replication protein),PP_1553 CDS (conserved protein of unknown function),PP_1554 CDS (conserved protein of unknown function),PP_1555 CDS (putative Phage integrase),PP_1556 CDS (conserved protein of unknown function),PP_1557 CDS (conserved protein of unknown function),PP_1558 CDS (conserved protein of unknown function),PP_1559 CDS (Holin),PP_1560 CDS (conserved protein of unknown function),PP_1561 CDS (putative Phage holin),PP_1562 CDS (putative Phage terminase_ small subunit),PP_1563 CDS (putative Phage terminase_ large subunit),PP_1564 CDS (conserved exported protein of unknown function),PP_1565 CDS (Phage portal protein_ HK97 family),PP_1566 CDS (Peptidase U35),PP_1567 CDS (Capsid protein),PP_1568 CDS (conserved protein of unknown function),PP_1569 CDS (conserved protein of unknown function),PP_1570 CDS (Head‑tail adaptor),PP_1571 CDS (conserved protein of unknown function),PP_1572 CDS (conserved protein of unknown function),PP_1573 CDS (putative Major tail protein),PP_1574 CDS (conserved protein of unknown function),PP_1575 CDS (conserved protein of unknown function),PP_1576 CDS (putative Immunity protein),PP_1577 CDS (Phage tail tape meausure protein_ lambda family),PP_1578 CDS (conserved protein of unknown function),PP_5475 CDS (conserved protein of unknown function),PP_1579 CDS (conserved protein of unknown function),PP_1580 CDS (conserved protein of unknown function),PP_1581 CDS (BNR domain protein),PP_1582 CDS (conserved protein of unknown function),PP_1583 CDS (putative Structural protein P5),PP_1584 CDS (conserved protein of unknown function),PP_5476 CDS (conserved protein of unknown function),PP_1585 CDS (putative Antidote protein),[PP_1586 CDS (putative Killer protein)] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451_phaM1 | = 1738085 | 0 (0.000) | 906 (1.200) | 148/270 | 0.0 | 100% | intergenic (‑67/+1) | yffB CDS (putative glutathione‑dependent thiol reductase)/PP_1532 CDS (putative Phage integrase) | –/– |
| ? | AE015451_phaM1 | 1778145 = | 0 (0.000) | intergenic (‑1/‑196) | PP_1586 CDS (putative Killer protein)/PP_1587 CDS (NhaP‑type Na+_H+ and K+_H+ antiporters) | –/– | |||||
Only 100 of 906 total aligned reads displayed.
TCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/1737951‑1738085‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCATGTTACATATTCCCCCG > AE015451_phaM1/1778145‑1778280 TCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGA < 2:6647857/137‑1 TTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGC < 2:1854451/137‑1 TTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGC < 1:12429233/137‑1 TTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGC < 1:11975135/137‑1 GAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGA > 2:7681091/1‑137 gaaAGGTACGCGACTTTTTCATGGTGTCACAGGCTTTGATGCCGTAGAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAAT > 2:12002878/4‑137 GCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAAT < 1:11580626/137‑1 GCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAAT > 2:8997397/1‑137 TACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAA > 2:9559315/1‑137 CGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACG > 2:5515933/1‑137 CTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATT > 2:16529092/1‑137 CTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATT > 2:373436/1‑137 TTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGT > 1:2962692/1‑137 TTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTT < 2:1254964/137‑1 TCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCACAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTA > 1:176828/1‑137 CATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAA > 1:15991431/1‑137 TCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCNAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGAT > 1:15595135/1‑137 CACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCATGAGAGCGGAATGCTTAACGTTATTCTTTAATTTCGATT < 1:7894957/137‑1 CACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATT < 1:274905/137‑1 CAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTAT > 1:6399538/1‑137 GGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATAC < 2:4278073/137‑1 GGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATAC < 2:4021281/137‑1 TTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACG < 1:10034996/137‑1 TGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGG < 2:14651991/137‑1 TGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGG < 1:243889/137‑1 TGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGG < 1:13794131/137‑1 TGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGAT > 2:1173139/1‑137 TGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGAT > 2:1367387/1‑137 TGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGAT > 2:1044431/1‑137 TGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGAT > 1:533341/1‑137 TGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGAT < 2:8118249/137‑1 TGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATCTCGATTATACGACGGGAT > 2:12825206/1‑137 CCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCG < 2:2464139/137‑1 CCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCG < 1:4571809/137‑1 CCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCG < 1:163943/137‑1 AAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGCATGCTTAACGTTACTCGTTAATTTCGATTATACGACGGGATCGCTGT > 2:13360510/1‑137 AAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGT > 2:7355202/1‑137 AAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGT > 2:9724589/1‑137 AGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTT > 2:9786596/1‑137 AGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTT < 1:579730/137‑1 GTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAA > 2:12230857/1‑137 AAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGT > 2:15349746/1‑137 AAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGT < 1:6489836/137‑1 AAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGT > 2:3291306/1‑137 AAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGT > 2:4545234/1‑137 AAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTACCAAAAATTAGTCGCAGGAGCGCTGAATGCTTAACGTTATTCGTTACTTTCGATTATACGGCGGGATCGCTGTAGTTCAAGT > 1:9672303/1‑137 TGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAAT < 1:16240272/137‑1 GAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATA > 1:11358007/1‑137 GAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATA > 2:4871284/1‑137 ATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAAC > 1:10531049/1‑137 ATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAAC > 2:8756103/1‑137 ATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAAC > 1:3539797/1‑137 TTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGG < 2:15055452/137‑1 GGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACG < 2:9342602/137‑1 CTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGAC < 2:11046482/137‑1 TGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACT < 1:10776889/137‑1 TGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACT < 2:15876854/137‑1 GGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCG > 2:2705866/1‑137 GGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCG > 1:3209764/1‑137 TTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAA < 2:6864242/137‑1 CTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCT < 1:15049718/137‑1 CCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCC > 1:8307830/1‑137 CCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCC > 1:6161401/1‑137 CCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACT < 1:722149/127‑1 CCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACT > 2:722123/1‑127 CCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAANGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCC > 1:14214301/1‑137 caCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGTGCCCGCGACTCGCAAGCTCCG > 2:168094/3‑137 CCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCG > 2:1480026/1‑137 AACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCAC > 1:7530134/1‑137 AACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCAC > 2:635491/1‑137 AACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCAC > 2:8524690/1‑137 AACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCAC > 2:10243012/1‑137 CCTCCCCAATATCTCCCAAAAATTAGTCGCATGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACAT < 1:4878802/137‑1 CCTCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACAT < 1:3379372/137‑1 TCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCT < 1:11083907/137‑1 TCCCCAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCT < 1:3767453/137‑1 CAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTG > 2:11402096/1‑137 CAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTG > 2:296703/1‑137 CAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTG > 1:6670494/1‑137 CAATATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTG > 1:9248466/1‑137 ATCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTA < 2:163014/137‑1 TCTCCCAAAAATTAGTCTCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTCCAATTATACGACGGGATCGCGGTAGTTCAAGTCGTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTAT < 2:13962767/137‑1 TCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTAT < 1:8690504/137‑1 TCTCCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTAT > 1:14604029/1‑137 CCCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTNGCAAGCTCCGGTCACATCTGCTGGGTATCAT > 2:59718/1‑137 CCAAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGTTCACATCTGCTGGGTATCATC < 1:13273540/137‑1 AAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCAT > 1:4308565/1‑137 AAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCAT > 1:2219760/1‑137 AAAAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCAT > 2:5145331/1‑137 AAATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCATGT < 2:7045399/137‑1 AATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCATGTT > 1:16728244/1‑137 ATTAGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCATGTTA > 1:12714813/1‑137 AGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCATGTTACAT < 2:15558862/137‑1 AGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCATGTTACAT < 1:1519509/137‑1 AGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCATGTTACAT < 1:13438416/137‑1 AGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCATGTTACAT < 2:14922921/137‑1 AGTCGCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCATGTTACAT < 2:14216313/137‑1 GCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCCAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCATGTTACATATTC > 1:3998442/1‑137 GCAGGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAA < 1:9850294/96‑1 GGAGAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCATGTTACATATTCCCC < 2:2161166/137‑1 TCTTCGAGCCAGGTACGCGCCTTTTTCATGGTGTCACAGGCTTTGATGCCGTAAAGAGTGTAAGTCATTGAATTTAAAGGGGCTGGGATTACTCCCCAAAACCTCCCCAATATCTCCCAAAAATTAGTCGCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/1737951‑1738085‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCTGAATGCTTAACGTTATTCGTTAATTTCGATTATACGACGGGATCGCTGTAGTTCAAGTCTTCAATAACGGGCACGCGACTCGCAAGCTCCGGTCACATCTGCTGGGTATCATCATGTTACATATTCCCCCG > AE015451_phaM1/1778145‑1778280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |