Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AE015451_phaM15,737,7560AG40.9% 133.9 / 100.3 209intergenic (+45/+26)hutF CDS (probable formiminoglutamate deiminase)/PP_5037 CDS (lipocalin family lipoprotein)–/–
Reads supporting (aligned to +/- strand):  ref base A (17/106);  new base G (0/85);  total (18/191)
Fisher's exact test for biased strand distribution p-value = 1.21e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 210 total aligned reads displayed.

GGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCT‑G‑AGCGTACCGGGGTTG‑CGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAG  >  AE015451_phaM1/5737633‑5737892
                                                                                                                              |                                                                                                                                         
ggtgCTCAATGGGCGGCATACCCAGGAAGAGAAAAGATGGCGGGCGTTTGCCAAGGCTTTGCGCCAGCTTTTGGGAT‑G‑AGTGCACCGGTGTTG‑CGTTGCAACCCTTCGCTTGCAACCCCTCGAAGGGTTgcaa‑cgca                                                                                                                             <  2:11633265/137‑1 (MQ=255)
ggtgCGCCAGGGGCGGCATGCCCAGGAAGACGAAATCGGGCGGGTGTTTTCCAAGGTTTTGCCCCAGCTTTTGGGCG‑G‑AGCGTACCGGGGTTG‑CGTTACATCCCTTCTCGTGCAAGCCCGCGAAGGGTTgcaa‑cgca                                                                                                                             <  2:13007021/137‑1 (MQ=255)
               gcATGCCAAGAAAGATGAAATTGGGCGGTCGTTGGCCAAGGTGTTTCCCCAGCTTTGGGGCG‑G‑AGCGTACCGGGGTTG‑CGTTACAGCCCTCCGCGTGAAAGCCCGCGAAGGGTTACAA‑CGCAACCCCAAAAAACTCa                                                                                                              <  2:9638682/137‑1 (MQ=255)
               acATGCCCAGGAAGATGAAAGTGGGCGGGTTTTTGCCAAGGTGTGGCGCCATTTTTTGGGCT‑G‑AGCGTACCGGGGTTG‑CGTTACAGCCCTTCGCGGGAAAGCCCGAGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCa                                                                                                              <  2:6347526/136‑1 (MQ=255)
               acATGCCCAGGAAGATAAAAGCGGGCGGGCTTTTGCCAAGGTGTTGCGCCAGTTTTGGGGCG‑G‑AGCGTACTGGGGTTG‑CGTTGCAGCCCTTCGCGGGCAATCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCa                                                                                                              <  2:10720459/136‑1 (MQ=255)
                    cccAGGAATATGAAGTGGGTCGGTCGTTTGCCAGGGTGTTGCGCCAGTTTTTGGGCG‑G‑AGTGTACCGGGGTTG‑CGTGGCGTCCTTTTGCGTGCAATCCTGCGAGGGTTTGCAC‑CGCAACCCCAAAAAACTCAGTGCa                                                                                                         <  2:1660251/137‑1 (MQ=255)
                    cccAGGAAGAGGAAAGCGGGTGGGCGTTTGCCAAGGTGTTGCGCAAGTTTTGGGGCG‑G‑AGTGTACTGGGGTTG‑TGTTGCAGCCTTTCGCGTACAAGCCTGCGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCa                                                                                                         <  2:10801443/137‑1 (MQ=255)
                      cAGGAGGATGAAATTGGGTGGTCGTTTGCCAAGGTGTTGCGCCAGTTTTGGGGCG‑G‑AGCGTACTGGGGTTG‑TGTTACATCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCAtt                                                                                                       <  2:10767056/137‑1 (MQ=255)
                              ggAAAGCGGGCGGGTGTTTGCAAGGGTGTTGCGCCATCTTTTGGACT‑A‑AGCGTACCGGGTTTG‑CTTTGCAGCCTTTCGTGTGCAAGCCCGCGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTAt                                                                                               <  2:10121952/136‑1 (MQ=255)
                                 aaGGGGGGGGGGGTTTGCAAGGGTGTTATACCAGTTTTGGGGTG‑G‑GGCGGACGGGGGTTG‑TGTGGCAGCCTTTTGCGGGAAAGCCCGGGGGGGGTGGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTg                                                                                            <  1:7773584/137‑1 (MQ=255)
                                   tcgggcgggCGTTTGCCAAGGTGTTGCACCAGCTTTTGGGCT‑G‑AGCGTACCGGGGTTG‑CGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCt                                                                                          <  2:7572756/136‑1 (MQ=255)
                                         gggtttttCCCAAGGTGTTTCGCCATTTTTGGGGTT‑G‑AGTGTATTGGGGTTG‑CGTTGCGCCTTTTTGCGGACAAGCCCGGGAGGGGTGGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCgg                                                                                    <  1:9769041/132‑1 (MQ=255)
                                         gggcgTTTGCCAAGGTTTTGAGCCGGTTTTTGGGCT‑G‑AGCGTACCGGGGTTG‑CGTTGCAGCCCTTCGCGGGCAAGCCTGCGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCgg                                                                                    <  2:5988538/137‑1 (MQ=255)
                                         gggcgTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCG‑G‑AGCGTACTGGGGTTG‑CGTTGCAGCCTTTCGCGGGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCgg                                                                                    <  2:4041611/137‑1 (MQ=255)
                                         gggcgTTTGCCAAGGTGTTGCGCCAGCTTTGGGGCT‑G‑AGCGTACTGGGGTTG‑CGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCgg                                                                                    <  2:11504432/137‑1 (MQ=255)
                                         gggcgGTTGCAAGGGTTTTTCGCCGGCTTTGGGTCG‑G‑AGTGTACTGGGGTTG‑TGTTGAAGCCCTTCGTGTGAAATCCCGCGAGGGGTGGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCgg                                                                                    <  1:8206324/137‑1 (MQ=255)
                                              tttGCAAAGTTGTTGCGCCA‑TTTTTGGGGT‑GAAGCGGACTGGGGTTG‑CGTTGCAGCCTTTCGCGTGAAAGCCCGCGAGGGTTGGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcgcc                                                                               <  2:6722782/137‑1 (MQ=255)
                                              tttCCCAAGGTTTTTCACCATTTTTTGGTCG‑G‑AGCGTACTGGGTTTT‑CGTTCCACCCCTTCGCGTGCAACCCCGCGAAGGTTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcgcc                                                                               <  2:8309419/137‑1 (MQ=255)
                                                     ggggtttGGGCCAGTTTTTGTGCT‑G‑AGCGTA‑CGGGGTTGTCGTTGAACCCTTTCGTGTAAAAGCCGGGGGGGGGGTAAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGa                                                                        <  1:1614317/132‑1 (MQ=255)
                                                     gggTTTTGCGCCAGCTTTTGGGCT‑G‑AGCGGACCGGGGTTG‑CGTTGCAGCCTTTCGCGTGCAAGCCCGCGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGa                                                                        <  2:14597220/136‑1 (MQ=255)
                                                      ggTTTTGCGCCAGCTTTTGGGCT‑G‑AGCGTACCGGGGTTG‑CGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGAt                                                                       <  2:8085511/137‑1 (MQ=255)
                                                      ggTGTTGCGCAAG‑TTTTGGGTTGG‑AGTGGAATGGGGTTG‑CGTGGCAGCCTTTCGTGTGAAATCCCGCGAGGGGTGGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGAt                                                                       <  1:2891802/137‑1 (MQ=255)
                                                       gtgtTCCGCCAGCTTTTGGGCG‑G‑AGCGTACCGGGGTTG‑CGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTGGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATc                                                                      <  2:6164108/137‑1 (MQ=255)
                                                           tttgcCAGCTTTTGGGCT‑G‑AAGGTACCGGGGTTG‑CGTTACAGCCCTTCGCGTACAAGCCCGCGAAGGGTGGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                  <  2:14090981/134‑1 (MQ=255)
                                                           ttcgcCAGTTTTTGGGCG‑G‑AGCGTACCGGGGTTG‑TTTTGCATCCCTTCGTGGACAATCCCGCGAAGGGTGGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                  <  2:8391771/135‑1 (MQ=255)
                                                           ttcgcCAGTTTTGGGGCT‑G‑AGCGTACCGGGGTTG‑CGTTGAAGCCTTTCGCGTACAAGCCCGCGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                  <  2:14794014/135‑1 (MQ=255)
                                                           tgcccaaGCTTTTGGGCT‑G‑AGCGTACCGGGGTGG‑CGTTGCAGCCCTTCGCGTGAAATCCCACGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                  <  2:15680268/131‑1 (MQ=255)
                                                           tGCGCCAGTTTTGGGGCG‑G‑AGCGTACGGGGGTTG‑CGTGGAAGCCCTTCTTGTGAAATCCCGCGGGGGTTTACAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                  <  1:12001652/137‑1 (MQ=255)
                                                           tGCGCCAGCTTTTGGGTT‑G‑AGCGTACTGGGGTTG‑TGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                  <  2:8801527/137‑1 (MQ=255)
                                                           tGCGCCAATTTTTGGGCT‑G‑AGCGTACCGGGGTTG‑CGTGGAATCCCTTCGTGTGCAAACCCGTGAAGGTTTGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                  <  1:7848644/137‑1 (MQ=255)
                                                           tGCGCCAACTTTTGGGCT‑G‑AGCTTACTGGGGTTG‑TGTTGCAGCCCTTCGCGTACAAGCCCGCGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGc                                                                  <  2:6590376/137‑1 (MQ=255)
                                                            gcgcCGGCTTTTGGGCT‑G‑GGCGTACTGGGGTTG‑TGTTGCAGCCCTTCGCGGGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCg                                                                 <  2:11873533/137‑1 (MQ=255)
                                                            gcgcCAGCTTTTGGGCT‑G‑AGCGGACCGGGGTTG‑CGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCg                                                                 <  2:12045386/137‑1 (MQ=255)
                                                             cgcCGGTTTTGGGGCG‑G‑AGCGTACCGGGGTTG‑TGTTGCAGCCTTTCGCGTGAAAGCCCGCGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCgg                                                                <  2:12220212/137‑1 (MQ=255)
                                                             cgcCAGCTTTTGGGCT‑G‑AGCGTACCGGGGTTG‑CGTTGCAGCCCTTCGCGTACAAGCCCGCAAATGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCgg                                                                <  2:3582127/137‑1 (MQ=255)
                                                             agcCAGTTTTTGGGCG‑G‑AGCGGACTGGGGTTG‑CGTTGAAGCCTTTCGCGGGAAAGCCCGAGAGGGGTTGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCgg                                                                <  2:4813694/136‑1 (MQ=255)
                                                              tccAGCTTTTGGGCG‑G‑AGTGTACTGGGGTTT‑CGTTGCAGCCCTTTGCGTGCAATCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGc                                                               <  2:14266770/136‑1 (MQ=255)
                                                              gccattttttGGGCT‑G‑AGCGTACTGGGGTTG‑CGTTGCAGCCTTTCGCGTACAATCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGc                                                               <  2:9421557/131‑1 (MQ=255)
                                                              gcCAGTTTTTGGGCG‑G‑AGCGTACTGGGGTTG‑TGTTGCAGCCCTTCGCGTACAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGc                                                               <  2:6111275/137‑1 (MQ=255)
                                                              gcCAGTTTGTGGGCG‑G‑AGAGCAGGGGGGTTG‑TGTTGCATTCTTTGGGGGAAAAGCCCGAGAGGGGTGACAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGc                                                               <  1:13545736/137‑1 (MQ=255)
                                                              gcCAGCTTTTGGGCT‑G‑AGTGTACTGGGTTTG‑CTTTGCACCCCTTCGCGTGCAAGCCCGCGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGc                                                               <  2:3256037/137‑1 (MQ=255)
                                                                     tttGGGCT‑G‑AGCGTACCGGGGTTG‑CTTTTCCGCCCTTTTCGTTTCAGCCCACGAAGGGGTTCAA‑CCAAAACCCAAAAAAACCAATGTATTTTTTCTCTTTTTTTCTTGGGCGCCCACCAAATCCAGCAGATGgtgtt                                                        >  2:15388941/1‑136 (MQ=255)
                                                                           cT‑G‑AGCGGACGGGGGTGG‑CGTTGGAGCCCTTCGCGGGCAAGCCCGCGAAGGGTTGAAA‑CGCAACCCCAAAAAACTCATTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATAccc                                                  <  1:16426398/137‑1 (MQ=255)
                                                                                  tttACCGGGGTTG‑TGTTGCAGCCTTTCGCTTACAGGCCCGTGAAGGGTTACAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:14583828/135‑1 (MQ=255)
                                                                                  tggaCCGGGGTTG‑TGTTGCAGCCCTTCGCGTGCAAGCCCGGGAGGGGTTGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:15063520/134‑1 (MQ=255)
                                                                                  tgTACTGGGGTTG‑TGTTGCAGCCTTTTGTGGGAAAGCCCGAGAAGGGTGAAAC‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  1:10436862/136‑1 (MQ=255)
                                                                                  gggactgggtTTG‑CTTTGCATCCCTTCTTGGACAGACCCGCGAGGGGTGGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  1:8617335/131‑1 (MQ=255)
                                                                                  ggTACGGGGGTGG‑CTTTGCGACCCTTCATGGTCAAGCTCCAGGGGGGTGGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGGTCAAGCGGCTGGTGTCATACCCctgct                                             <  1:3888855/136‑1 (MQ=255)
                                                                                  cttACTGGGGTTG‑CGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:3799507/135‑1 (MQ=255)
                                                                                  cggactggggTTG‑CGTTGCATCCTTTTGTGGGAAATCCTGGGAGGGGTGGAAA‑CGCAACCCCAAAAAACTCAGTGAATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  1:10001788/131‑1 (MQ=255)
                                                                                  cGTATCGGGGTTG‑CGTGGCAGCCCTTCGCGGGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:11014746/137‑1 (MQ=255)
                                                                                  cGTACTGGGGTTG‑CGTTGCATCCCTTCGCGTGCAACCCCGCGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  1:16589777/137‑1 (MQ=255)
                                                                                  cGTACTGAGGTTG‑CTTTGCACCCCCTAGCGTTCAAGCCCGCGAAGGGTTACAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctact                                             <  2:5114838/137‑1 (MQ=255)
                                                                                  cGTACGGGGTTTG‑TGTTGCGGCTTTTTGGGGACAAGCCTGTGAAGGGGTGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  1:11517151/137‑1 (MQ=255)
                                                                                  cGTACCGGGGTTG‑TTTTGCATCCTTTCTCGTGAAGGCCCGAGAAGGGTTACAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  1:15277654/137‑1 (MQ=255)
                                                                                  cGTACCGGGGTTG‑TGTTGCAGCCCTTCGCGTGAAAGCCCGCGAAGGGTGGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:4760301/137‑1 (MQ=255)
                                                                                  cGTACCGGGGTTG‑CTTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:846780/137‑1 (MQ=255)
                                                                                  cGTACCGGGGTTG‑CGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:5454387/137‑1 (MQ=255)
                                                                                  cGTACCGGGGTTG‑CGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:13572342/137‑1 (MQ=255)
                                                                                  cGTACCGGGGTTA‑CGTGCCGGCCCTTCGCGTGCACCCCCCCAAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTACATTTTTACTATCTGCTGATCGGCCACCCGCCAGATCAAGCGGCTGGTGCCATACCCctgct                                             <  2:14539986/137‑1 (MQ=255)
                                                                                  cGTACCGGGGTGG‑CGTTGCAGCCTTTCGCGTGCAAACCCGCGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  2:2931707/137‑1 (MQ=255)
                                                                                   ttcccGGGGTTG‑TGGTGTAGCTCTTCTGGGGAAAGCCCGAAAAGGGTGGCAACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCctgct                                             <  1:16062027/134‑1 (MQ=255)
                                                                                     actggggTTG‑TGTTGCATCCTTTCGCGGGCAAGCCCGCGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc                                          <  2:5302931/134‑1 (MQ=255)
                                                                                     acgggggTTG‑TGTTGAAGCCTTTCGCGTGAAAGCCCGAGAGGGGTGGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc                                          <  1:7022686/134‑1 (MQ=255)
                                                                                     aCCGGGGTTT‑CGTTGCATCCCTTCGCTTGCAAGCCCGCGAAGGGTTGCAC‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc                                          <  1:12247523/137‑1 (MQ=255)
                                                                                     aCCGGGGTTG‑TGTGGCAGCCCTCCGTGGACAAGCCTGCGAAGGGTGGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc                                          <  1:5900239/137‑1 (MQ=255)
                                                                                       tggggTTG‑TGTGGCATCCTTTTGGGTGCAAGCCCGCGAGGGGTGACAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCcgc                                        <  1:16875328/136‑1 (MQ=255)
                                                                                       tggggTTG‑AGTGGAAGCCTTTTGAGGGAAAGCCAGCGAGGGGTGAAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCcgc                                        <  1:5213946/136‑1 (MQ=255)
                                                                                       tggggTGT‑CGTTGCATCCCTTCGCGTACAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCcgc                                        <  2:5489337/136‑1 (MQ=255)
                                                                                       cGGGGTTG‑CGTGGCGACCCTTCACGGGAAAGCCCAGAAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTGTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCcgc                                        <  2:535332/137‑1 (MQ=255)
                                                                                         gggTTG‑CTTTGCAGCCCTTTGCGGGCAAGCCTGCGAGGGTTTGCAC‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCgcgc                                      <  1:10666825/137‑1 (MQ=255)
                                                                                          ggTTG‑CGTTGCAACCCTTTGCGGGCAAGCCCGCGAAGGGTGGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGcc                                     <  2:8735116/137‑1 (MQ=255)
                                                                                                tgttgcAGCCTTTTGCGGGAAAGCCCGGGAAGGGTTGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGa                                <  1:6569315/136‑1 (MQ=255)
                                                                                                cgttgcAGCCTTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGTACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGa                                <  2:16218995/137‑1 (MQ=255)
                                                                                                cgttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGa                                <  2:11317612/137‑1 (MQ=255)
                                                                                                 gttgcGGCCTTTGGGGGGCAAGCCTGGGAGGGGTGACAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAc                               <  1:9120541/137‑1 (MQ=255)
                                                                                                 gttgaAGCCCTTCGCGTGAAAGCCCGCGAAGGGTGGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAc                               <  2:15906266/137‑1 (MQ=255)
                                                                                                    acAGCCTTTTGCGTGCAAGCCTGTGGAGGGTTACAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagc                            <  1:6917519/136‑1 (MQ=255)
                                                                                                        cccTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAAATCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATCCCCCTGCTGCCGCGCCCTGGAAAGCAGGt                        >  2:12534005/1‑137 (MQ=255)
                                                                                                          tttCGCGTGCAAGCCCGTGAGGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                      <  1:4536595/136‑1 (MQ=255)
                                                                                                          tttCGCGGGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                      <  1:12477243/136‑1 (MQ=255)
                                                                                                          ctccgcgTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                      <  2:8952631/134‑1 (MQ=255)
                                                                                                          cTTTGCGTGAAATCCCGTGAAGGTTTGCAA‑CACAACCCCAAAAAACTCATTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                      <  2:127937/137‑1 (MQ=255)
                                                                                                          cTTCGTGTGCAAGCCCGCGAGGGGTGGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                      <  2:4089280/137‑1 (MQ=255)
                                                                                                          cTTCGTGGGCAAGCCTGCGAGGGGTGGCAA‑CGCAACCCCAAAAAACTTAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtc                      <  1:9606331/137‑1 (MQ=255)
                                                                                                             cgcgTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATTGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAc                               >  2:7785481/1‑125 (MQ=255)
                                                                                                             cgcgTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCACGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtctcg                   >  2:11681602/1‑136 (MQ=255)
                                                                                                                gTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCCAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCCGGCTCTCACGc                >  1:7936975/1‑137 (MQ=255)
                                                                                                                gTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCAtt                                                                                                       <  1:15890550/50‑1 (MQ=255)
                                                                                                                gTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAAATCAGTGCATTTTTACTATTTGCTGATCGGACGCCCACCAGATCAAGCGGCTGGTGTCACACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAAGc                >  2:13465868/1‑137 (MQ=255)
                                                                                                                gTGCAAGCCCGAGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGc                <  2:11959164/137‑1 (MQ=255)
                                                                                                                      gCCCGCGAGGGGTGACAA‑CGCAACCCCAAAAAACTCAGTGCATTTTGACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg          <  2:8626156/137‑1 (MQ=255)
                                                                                                                       cccGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg         <  2:9177803/137‑1 (MQ=255)
                                                                                                                        cctcgAAGGTTTGCAC‑CGCAACCCCAAAAACCTCATTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCATGc        <  2:7099041/134‑1 (MQ=255)
                                                                                                                        cctcgAAGGGTTACAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  1:14115510/134‑1 (MQ=255)
                                                                                                                        ccGCGAGGGGTTGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  2:4319678/137‑1 (MQ=255)
                                                                                                                        ccGCGAAGGTTGGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  1:11895897/137‑1 (MQ=255)
                                                                                                                        ccGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcgcc                                                                               <  2:1947833/66‑1 (MQ=255)
                                                                                                                        ccGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGAGCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTGCTCACGCTCCCAGGc        <  2:2349863/137‑1 (MQ=255)
                                                                                                                        ccGAGAGGGGTGGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc        <  1:3256797/137‑1 (MQ=255)
                                                                                                                              |                                                                                                                                         
GGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCT‑G‑AGCGTACCGGGGTTG‑CGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAG  >  AE015451_phaM1/5737633‑5737892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑