| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451_phaM1 | 699,722 | 0 | A | G | 51.9% | 190.0 / inf | 847 | intergenic (+115/‑129) | PP_t06 tRNA (tRNA‑Ala)/PP_23SD rRNA (23S ribosomal RNA) | –/– |
| Reads supporting (aligned to +/- strand): ref base A (192/214); new base G (248/191); total (441/406) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.79e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 848 total aligned reads displayed.
TCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAAC > AE015451_phaM1/699586‑699792 | cGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGAc > 1:1831336/1‑137 (MQ=40) cGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGAc < 1:4870432/137‑1 (MQ=40) gATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACt > 1:2050222/1‑137 (MQ=40) aTCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTg < 2:8128354/137‑1 (MQ=255) aTCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTg < 2:9540576/137‑1 (MQ=255) tCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGa > 2:12500544/1‑137 (MQ=255) tCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGa > 2:8857620/1‑137 (MQ=255) tCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGa > 2:6526851/1‑137 (MQ=255) tCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGa > 1:11529498/1‑137 (MQ=255) tCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGa < 2:4185554/137‑1 (MQ=40) tCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGa > 1:10007091/1‑137 (MQ=40) cccGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGaa < 1:12615848/137‑1 (MQ=255) ccGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAac < 2:12036769/137‑1 (MQ=40) ccGCTGGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAac < 1:11281469/137‑1 (MQ=255) cGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAaca < 1:4054050/137‑1 (MQ=40) ttGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCa < 1:14842065/137‑1 (MQ=40) tGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGGACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAg < 2:6161195/137‑1 (MQ=255) ggCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGt > 2:11373097/1‑137 (MQ=255) ggCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGt > 1:8442145/1‑137 (MQ=255) ggCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGt > 2:2482038/1‑137 (MQ=255) ggCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGt > 1:10609289/1‑137 (MQ=255) ggCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGt > 1:15371498/1‑137 (MQ=40) ggCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGt > 1:14634918/1‑137 (MQ=40) gCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGtt < 1:10798255/137‑1 (MQ=255) gCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGtt < 2:84120/137‑1 (MQ=40) gCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGtt < 1:8752552/137‑1 (MQ=40) tCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTc > 1:8124188/1‑137 (MQ=255) tCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTc < 2:7262583/137‑1 (MQ=255) caccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGCTATAGACTGAACACCAGTTTCAc > 2:15979388/1‑137 (MQ=255) caccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCAc > 1:15627324/1‑137 (MQ=255) caccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCAc > 1:7796102/1‑137 (MQ=255) caccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCAc > 1:11051184/1‑137 (MQ=255) caccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCAc > 1:13502651/1‑137 (MQ=40) ccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCActg > 2:9278126/1‑137 (MQ=255) cacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCActgc < 1:3640479/137‑1 (MQ=255) cacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCActgc < 2:13553304/137‑1 (MQ=255) cacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgc < 2:15327687/137‑1 (MQ=40) cacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgc < 2:14271930/137‑1 (MQ=40) cacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgc < 1:14682535/137‑1 (MQ=40) cacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgc < 2:12188507/137‑1 (MQ=40) acTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCActgct > 2:1492688/1‑137 (MQ=255) ttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggt < 2:10041559/137‑1 (MQ=255) ttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggt < 2:4531606/137‑1 (MQ=255) ttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAACGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggt < 2:1725700/137‑1 (MQ=255) tCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggtg < 1:15918838/137‑1 (MQ=255) tCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggtg > 2:9025862/1‑137 (MQ=255) tCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggtg < 1:6032890/137‑1 (MQ=255) tCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggtg < 2:7633575/137‑1 (MQ=255) tCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg < 1:9556696/137‑1 (MQ=40) tCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTGT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggtg < 2:11848230/137‑1 (MQ=255) tCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGGTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggtg < 2:3352111/137‑1 (MQ=255) cGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg < 1:2450392/137‑1 (MQ=255) cGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggtgg > 2:9704735/1‑137 (MQ=255) cGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtgg > 1:2891333/1‑137 (MQ=40) cGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtgg > 2:1069321/1‑137 (MQ=40) gCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCActg < 2:5845579/129‑1 (MQ=255) gCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGa > 1:5732577/1‑137 (MQ=255) gCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGa > 1:16804414/1‑137 (MQ=40) ccGTACGCAGTTACTTGTCAGAACTTAGAAATGAACAGTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGAt > 1:16295610/1‑137 (MQ=255) gTACACAGTTACTTGCCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTTAGATCGTTCTTT‑AAAAATTAGGATATGTGATAGATATAGACTAAACACCAGTTTCCCTGCTGGTGGCTCa > 2:10384020/1‑137 (MQ=14) tACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAg < 2:11494963/137‑1 (MQ=255) tACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAg < 1:1366021/137‑1 (MQ=40) cGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGc > 1:15047145/1‑137 (MQ=255) cGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGc > 2:5151586/1‑137 (MQ=40) cAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTa > 2:13094584/1‑137 (MQ=255) cAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTa > 1:12058573/1‑137 (MQ=255) cAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTa < 1:11728934/137‑1 (MQ=40) aGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTaa > 1:6389864/1‑137 (MQ=255) aGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTa > 2:13986611/1‑136 (MQ=40) gTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAt > 2:15775463/1‑137 (MQ=37) cAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAttt > 1:7203962/1‑137 (MQ=37) cAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAttt > 2:12789992/1‑137 (MQ=37) gAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGTTGGATCAGGCTAAGGTAAAATTtgg < 2:5484022/137‑2 (MQ=255) gAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 1:9376421/137‑1 (MQ=37) gAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 1:10390670/137‑1 (MQ=37) gAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 1:13231390/137‑1 (MQ=37) gAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 2:13678169/137‑1 (MQ=37) aCTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGa > 1:7486811/1‑137 (MQ=37) aCTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGa < 2:3990936/137‑1 (MQ=37) aCTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGa < 2:4946162/137‑1 (MQ=37) gttAGAAGTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTAGGATATGTGATAGATATAGGCTGAACCCCAATTCCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAg > 2:16503567/2‑137 (MQ=11) cTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAg > 1:5446075/1‑137 (MQ=37) cTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAg > 2:2811401/1‑137 (MQ=37) gAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCt < 1:9776612/137‑1 (MQ=37) gAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCt < 1:904198/137‑1 (MQ=37) gAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCt < 2:16117749/137‑1 (MQ=37) gAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCt < 1:14464784/137‑1 (MQ=37) gAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCt < 1:5054747/137‑1 (MQ=37) gAAATGAACATTCAGCTCGAATGTTGACTTCTGGCTTTTTTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCt < 2:2161564/137‑1 (MQ=255) aaTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACCCCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAACTTTGTGAGTTCTGc > 2:3130399/1‑137 (MQ=255) aaTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGc > 1:4719607/1‑137 (MQ=37) aaTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGc > 1:14179134/1‑137 (MQ=37) aTGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCt > 1:16494444/1‑137 (MQ=37) aCATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGaa > 1:6877525/1‑137 (MQ=37) cATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGaaa < 1:3836288/137‑1 (MQ=37) aTTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAag > 2:6888575/1‑137 (MQ=25) aTTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAag > 2:5638856/1‑137 (MQ=25) aTTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAag > 1:441023/1‑137 (MQ=35) aTTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAag > 1:12967048/1‑137 (MQ=35) gCTCGAATGTTGATTTCTGGC‑TTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAAc < 1:3336852/137‑1 (MQ=14) | TCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTT‑AAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAAC > AE015451_phaM1/699586‑699792 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |