| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AE015451_phaM1 | 4,740,811 | (T)7→6 | intergenic (+48/+705) | gltA CDS (citrate synthase) → / ← yeiW CDS (putative oxidoreductase) | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451_phaM1 | 4,740,805 | 0 | T | . | 94.1% | 1445.9 / 67.2 | 325 | intergenic (+42/+711) | gltA CDS (citrate synthase)/yeiW CDS (putative oxidoreductase) | –/– |
| Reads supporting (aligned to +/- strand): ref base T (1/18); new base . (179/123); total (183/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.27e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 393 total aligned reads displayed.
AAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAAC > AE015451_phaM1/4740669‑4740941 | aaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCt > 2:10929074/1‑137 (MQ=255) gCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt < 1:712483/137‑1 (MQ=255) gCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt < 1:7918227/137‑1 (MQ=255) gCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt < 1:9869902/137‑1 (MQ=255) gCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt < 1:11780775/137‑1 (MQ=255) gCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt < 1:13586658/137‑1 (MQ=255) gCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGATGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt < 2:7572713/137‑1 (MQ=255) tcCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttatt > 2:865764/1‑134 (MQ=255) tcCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttatt > 1:11522425/1‑134 (MQ=255) tcCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttatt > 1:11980664/1‑134 (MQ=255) tcCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttatt > 1:12627537/1‑134 (MQ=255) tcCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttatt > 1:2158715/1‑134 (MQ=255) tcCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttatt > 2:4243476/1‑134 (MQ=255) ccAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttattt < 1:10296281/137‑5 (MQ=255) ccAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttattt < 2:11463532/137‑5 (MQ=255) ccAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttattt < 1:132069/137‑5 (MQ=255) cccGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttt < 2:1546604/128‑1 (MQ=255) aGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGCCCGCAAGTAAGCTGCAGTAGCCGAACGCAAGCAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCgg > 1:7348495/1‑137 (MQ=255) aGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAATGCTGCCCTCTGGCAGCC‑TTTTTTATTTGTCCTGTGCCgg < 1:11616935/137‑1 (MQ=255) aGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCgg > 1:5763721/1‑137 (MQ=255) cGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCct‑c < 2:6149811/137‑1 (MQ=255) gtacgcgCCAGCTGTGCACCGGCGAGCAGAAGCGCGACATCGTTGCCATGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGGAGGCTGACCTCGGGCAGCC‑TTTTTTCTTTGTCCTGTGCCGGCCT‑Cttagc > 2:17398009/4‑134 (MQ=255) gTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGGAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTcgc > 2:3258091/1‑137 (MQ=255) gTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTCTTTGTCCT‑GTGCCGGCCT‑CTTcgc > 1:6079534/1‑137 (MQ=255) gTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTctt > 1:17357742/1‑135 (MQ=255) gTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTcgc > 1:14422381/1‑137 (MQ=255) gTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTcgc > 2:9401773/1‑137 (MQ=255) gTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCC‑CTTcgc > 1:1035162/1‑137 (MQ=255) cgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGTCT‑CTTCGCGGACt > 1:14895795/1‑137 (MQ=255) cacCGGCGAGCAGAAGCTCGACGTCGTTTCCCTGAAAGACCTCAATTAAGCGCCAGTAGCCAAACGCAAGAAGTCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCTTGCCC‑CTTCGCGGCCTTACCCGCGAag < 2:10516049/137‑1 (MQ=255) cacCGGCGAGCAGAAGCGTGACATCGTTACCTTGAAAGACCTCAAGTAAGCTGCAGTAGCCAAATGCAAGAAGGCGGCCCTCGGGAATCC‑TTTTTTATTTGTCTTGTGCCGGCCT‑CTTTGCGGCCTTGCCCGCGAag < 2:2298609/137‑1 (MQ=255) cacCGGCGAGCAGAAGCGAGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAag < 2:11295449/137‑1 (MQ=255) gCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGAAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑cc < 1:12762417/137‑1 (MQ=255) gAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCgg > 2:6316884/1‑137 (MQ=39) aGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAATGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGc < 2:12825413/137‑1 (MQ=39) aGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCTAAGAGG‑ACGGc > 1:5187663/1‑137 (MQ=255) aGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCCTGCCCGCGAAGGGG‑CCGGc > 2:2877235/1‑137 (MQ=255) aGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCATTGCCCGCGAAGAGG‑CCGGc > 2:2061497/1‑137 (MQ=255) aGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCCCGGCCTTGCCCTCGAAAAGG‑ACggt > 1:6747771/1‑136 (MQ=255) gCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGca > 2:7204507/1‑137 (MQ=255) gCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGca > 1:15486865/1‑137 (MQ=39) cAGAAGTGCGACATCGTTGCCTTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCTTTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCTGGCCT‑CTTCGTGGCCTTGCCCGCGAAGAGG‑CCGGcac < 1:6747382/137‑1 (MQ=255) cAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGcac < 2:9337687/137‑1 (MQ=255) aGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCCGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGTGGCCTTGCCCGCGAAGAGG‑CCGGcaca > 2:11951888/1‑137 (MQ=255) aGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCTTGGCCTTGCCCGCAAAGAGG‑ACAGcaca > 1:8827886/1‑137 (MQ=255) aGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCTCGGCCCTTCCCGCGAAGAGG‑CCGGcaca > 1:1071993/1‑137 (MQ=255) aGAAGCGCGACATCGTTGCCCTGAAAGAACGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTCTTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGGAGAGG‑CCGGcaca > 2:11555443/1‑137 (MQ=255) gAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAATCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAg < 1:4133807/137‑1 (MQ=255) aaGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTACAGTAGCCGAACGCCAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGACT‑CTTCATGGACCTTCCCAAGAAAAGG‑CCGGCACAGa > 1:2343932/1‑137 (MQ=255) cATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACaa > 2:5288193/1‑137 (MQ=255) tGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTTTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTc < 2:12357583/137‑1 (MQ=39) aGACCGCAAGTAAGCTGCGGTAGCCGAACGCAAGAATGTTGCCCTCGGGCAGCC‑TTTTTTATTTTTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCTGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTtct < 2:11436429/137‑1 (MQ=255) gACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGACCTTCCCGCGAAGAGG‑ACGGCACAGACACCCCAAAACCCCAGTTTTtctc > 1:2527295/1‑137 (MQ=255) aCCGCAAGGAAGCTGCAGTAGCCGAACGAAAGAAGGCTGCCCTAGGGCAGCCTTTTTTGTTTGTCCT‑GTGCCGGCTT‑CTTCGCGGCCTTGCCCGCGAAGNGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTcc < 1:17032054/137‑1 (MQ=255) cGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTccgc < 2:11853641/137‑1 (MQ=255) agaaaGTAAGCGGCAGTAGCCGAACGAAAGAAGGCTGCCCTCGGGCAGCCTTTTTTGTTTGTCCT‑GTGCCGGCCT‑CTTTGCGGCTTTGCCCGAGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTccgc < 1:151290/134‑1 (MQ=255) cAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTTCCCGCGAAGAGG‑CCGGCACAAACACCCCAAAACCCCAATTTTTCTcccccc > 1:16406946/1‑137 (MQ=255) aaGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTTCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTccgcccg > 1:11125699/1‑137 (MQ=255) aaGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGGAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTccgcccg > 2:17009205/1‑137 (MQ=255) aaGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACCAAACCTCCGTTTTTCTccgcccg > 2:8299446/1‑137 (MQ=255) aaGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTccgcccg > 1:8685044/1‑137 (MQ=39) aaGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGAAACCACAAAAACTCAGTTTTTCTccgcccg > 2:7811655/1‑137 (MQ=255) aaGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGACTTGCCCGCAAAGAGG‑CAGGCACAGAAACCACAAAACCTCCGTTTTTCTccgcccg > 1:1381773/1‑137 (MQ=255) aGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGGCACCACAAAAACTCAGTTTTTCTccacccgc > 1:12258348/1‑137 (MQ=38) gCTGCAGTAGCCGAACGCAAGAATGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTTAGTTTTTCTCCGCCCGCTCACg < 2:13103494/137‑1 (MQ=38) gCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACg < 2:3708854/137‑1 (MQ=255) gCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACg < 2:1404135/137‑1 (MQ=255) cTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGc < 2:1332490/137‑1 (MQ=255) agaaGCAGAAAGAAAGAGGGCTGCCTTCGGGCAG‑CTTTTTTTGTTTGTCTTGTTCCGGCCT‑TTTCGCGGCCTTACCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGcc < 1:834189/134‑1 (MQ=25) caGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAGCCTCAGTTTTTCTCCGCCCGCTCCCGCCGcccc > 2:15039718/2‑136 (MQ=255) atccGAACGCAAGAAGGTTGCCCTCGGGAAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGAGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCtt < 1:10054007/135‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGTGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCtt < 2:7058880/137‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCtt < 2:9792966/137‑1 (MQ=255) aGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCtt < 2:16480130/137‑1 (MQ=255) ccGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTc < 1:4037223/137‑1 (MQ=255) ccGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCATTGCCCGCGAAGAGG‑CCGGCACCGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCCCGCAGCCCTTTc > 2:5694970/1‑137 (MQ=255) ccGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATGTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTc < 2:14448758/137‑1 (MQ=255) aaCGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCCCAGTTTTTCTCCACCCGCTCACGCAGCCCTTTCAgg > 1:17600809/1‑137 (MQ=38) cAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCTTGTGCTGGCCT‑CTTCGCGGCCTTGCCCGCGAGGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTAt < 1:1902540/137‑1 (MQ=255) cAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCCTTCCCGACCTT‑CCCCCAAAAAGGACCAACACAAAACCCACAAACCCCCATTTTTTCTCCACCCCCTCCCCCAACCCTTCCAGGTTa > 1:9165410/1‑137 (MQ=255) cAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCTCGGCCTTTCCCCCGAAGAGG‑CCGGCACAAAAACCCCCAAACCTCCGTTTTTTTCCTCCCGCTCACGCAGCCCTTTCAGGGTAt > 1:3269969/1‑137 (MQ=255) agaagaCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTg < 1:3867278/137‑1 (MQ=39) gagtgCTGCCCTCGTGCAGCC‑TTTTTTATTTGCCCTTTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTCTTCTCCGCCCGCTCACGCATCCCTTTCAGGGTATTGa < 2:1517478/133‑1 (MQ=37) agGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGACT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGAACCGAAAACCCAAAAACCCCGTTTTTTTCCACCCCCTCACGCAGCCCTTTCAGGGTATTTaaa > 1:14342498/1‑136 (MQ=255) ggCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCACTCACGCAGCCCTTTCAGGGTATTGAACg > 1:3615241/1‑137 (MQ=39) ggCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCAAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACg > 2:6644599/1‑137 (MQ=38) ggCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCCTGCCCGCAAAGAGG‑CCGGCACAAACACCCCAAAAAACCAGTTTTTCTCCGCCCGCTCCCGCAGACCCTTCAGGGTATTGAACg > 1:4463002/1‑137 (MQ=255) cccTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAAACTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACAGCGCa > 2:10245746/1‑137 (MQ=255) ccTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACCGACACCACAAAAACTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCac > 2:449842/1‑136 (MQ=38) ccTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGAACAGAAACCACAAAAACTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCAt > 2:3982450/1‑137 (MQ=38) ccTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGAACAAACACCACAAAACCTCAGTTTTTCTCCACCCGCTCACGCAGCCCCTTCAGGGTCTTGAACGGTGCac > 1:15765628/1‑136 (MQ=37) cTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGACTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAAACTCAATTTTTCCCCGCCCACTCACGCAAACCTTTCCGGGTATTGAACGGGACATc > 1:10984651/1‑137 (MQ=25) tCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTTCCCGCGAAAAGG‑ACGGCACAAACCCCCCAAAACCTCCGTTTTTCTCCACCCGCTCACGCAACCCTTTCCGGGTATTGGACGGCGCATcc > 1:6444895/1‑137 (MQ=255) tCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCCCGCAGCCCTTTCCGGGTATTGAACGGCGCATcc > 2:8768509/1‑137 (MQ=38) tCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATcc > 2:2534545/1‑137 (MQ=255) tCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATcc > 2:8968681/1‑137 (MQ=255) tCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATcc > 2:9520557/1‑137 (MQ=255) tCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCACGGCCTTGTCCGCGAAAAGG‑GCGGCACAAACACCACAAAAAACCAGTTTTTTTCCGCCCGCTCACGCAGCCCCTTCAAGGTATTGAACGGCGCATcc > 1:55006/1‑137 (MQ=255) gggCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCT‑CTTCGCGGCCTTTCCCGCGAAGAAG‑CCGGCACAGAAACCACAAAAACTCCGTTTTTCTTCGCCCGCTCAAACAGCCCTTTTAGGGTATTGAACGGCGCATccac > 1:6834453/1‑137 (MQ=255) tttttttGTTTGTCCTGTGCCGGCCT‑TTTCGTGGCTTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAAc < 1:4982140/137‑1 (MQ=255) | AAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCT‑CTTCGCGGCCTTGCCCGCGAAGAGG‑CCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAAC > AE015451_phaM1/4740669‑4740941 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |