| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AE015451_phaM1 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 CDS (Monooxygenase_ DszC family) ← / ← sctC CDS (sulfur compound ABC transporter ‑ ATP‑binding subunit) | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451_phaM1 | 278,742 | 1 | . | A | 94.9% | 2143.0 / 101.9 | 676 | intergenic (‑237/+77) | PP_0224 CDS (Monooxygenase_ DszC family)/sctC CDS (sulfur compound ABC transporter ‑ ATP‑binding subunit) | –/– |
| Reads supporting (aligned to +/- strand): ref base . (4/29); new base A (313/303); total (344/332) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.91e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 789 total aligned reads displayed.
GCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑A‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTC > AE015451_phaM1/278606‑278875 | gCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGt < 1:4413133/137‑1 (MQ=255)gCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGt > 2:13777300/1‑137 (MQ=255) tGATCGCGACAGACGTGTGCTGTTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑a < 1:13801011/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑a < 2:6723070/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑a < 1:7051562/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑a < 2:1095714/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑a < 2:13211749/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑a < 1:1310547/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑a < 2:290196/137‑1 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑aac < 2:8555490/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑aac < 1:6734277/137‑3 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑aacccg > 1:10008109/1‑132 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑aacccg > 2:6236100/1‑132 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑aac < 1:16621012/134‑3 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCt < 2:14011247/137‑1 (MQ=255) aCAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTc < 1:1517679/137‑1 (MQ=255) cAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTcc > 2:4968602/1‑137 (MQ=255) cGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTaca < 1:12685231/137‑1 (MQ=255) cGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTaca < 1:1822191/137‑1 (MQ=255) gtgtGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTacac < 2:1132894/137‑1 (MQ=255) tgtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGATGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTacaca < 1:7249503/137‑1 (MQ=255) tgtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTacaca < 1:5217234/137‑1 (MQ=255) tgtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTacaca < 1:11792662/137‑1 (MQ=255) tgtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTacaca < 2:5502708/137‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGc > 1:9281646/1‑137 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCaa > 1:10290843/1‑137 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCaa < 2:11949558/137‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCaa < 2:4380559/137‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCaa < 2:2332192/137‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCaa > 1:4162881/1‑137 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCaa > 1:14121737/1‑137 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCaa < 1:10779042/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCt < 2:17061300/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCt < 1:3719343/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCt < 2:12845976/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCt < 1:15848061/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCt < 1:9658433/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCt < 2:5684906/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAAGTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCt < 2:15311042/137‑1 (MQ=255) gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACACGCCTCAAGATCTGTG‑Ca > 1:2648261/1‑137 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGGTCTGTG‑CAc > 2:3205416/1‑137 (MQ=255) atataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTCA‑ACCTGCTCCTCCACCCATACCTCAAGATCTGTG‑CACTGt > 1:14607584/1‑137 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTa < 2:16235021/137‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTa < 2:17669999/137‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTa < 1:14945572/137‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTa < 1:497892/137‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTa < 1:111131/137‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTa < 2:9323675/137‑1 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGCAGGGGGGTTTGTTACAGAGGTGCCGAGC‑TCTTCG‑C‑AGGTAA‑AACCGCTCCTACCCACATGCCTCAAGATCTGTG‑CACTGTAGGAGCggg > 2:17419935/1‑137 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCggg > 2:15630421/1‑137 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCggg > 2:15052302/1‑137 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCggg > 2:892599/1‑137 (MQ=255) aTGATTTATAACCTTTTTATGAACGAAATTTTTGGAGTATTTATAGAAAGGGGACTTGTTACCGAGGTGCCGGGC‑TCTTCC‑C‑GGGC‑ACACCCGCTCCTACACACATGCTGTAAGATCTGTG‑CACTGTAGTAGCgggg > 2:16603111/1‑136 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTCA‑ACCCGCTCCTACACACATGCCTCAAGATTTGTG‑CACTGTAGGAGCGGGt > 1:6088024/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTCTAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑AGGTCA‑ACCCGCTCCTACACACATGCCTCCAGATCTGTG‑CACTGTAGGAGCGGGctt > 2:4003554/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTacaca > 2:13516442/1‑101 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑TACTGTAGGAGCGGGttt > 1:5925038/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGttt > 2:4622679/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGttt > 2:7543521/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGttt > 2:6907022/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGttt > 2:10586326/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGttt > 2:102886/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGttt > 1:8797505/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCCCCTACACACACGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGttt > 1:7859940/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑a‑aac < 2:3525727/88‑3 (MQ=255) aTTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTCCACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGtttc > 1:12349721/1‑136 (MQ=255) tttATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTAc > 2:12136621/1‑137 (MQ=255) taAAATTTTTGTGAACTAACTTTTTGGAAGATTTATAGAAGGGGGACTTGTCACAGAGTTCCTGGGC‑TTTTCG‑C‑GGGGAA‑ACCAGCTCCTACACACATGCCTCAAGACCTGTG‑CACTGTAGGAGTGGGTTTACCcgc < 2:9542636/137‑1 (MQ=255) taAAATTTTTATGAACTAACTTTCTGGACTATTGATAGAAGGGGGATTTGTTACAGAGGTGCCAGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTTTG‑TACTGTAGGAGCGTGCTTACCcga > 2:8242828/1‑136 (MQ=255) taAAATTTTGGGGAATTAATTTTTTGGAAGATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGT‑CCTTCGTG‑GGGA‑A‑ACCCGCTCCTACACACGGGCCTCAAGATCGGGG‑CACTGTAGGAGCGGGTTTACCcgc < 2:3763229/137‑1 (MQ=255) aaaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCt > 1:17329728/1‑109 (MQ=255) aaaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCACTCCTCCACACCTGCCTCAAAATCTGTG‑CACTGTAGGAGCGGGTTTCCCcacg > 1:6551174/1‑137 (MQ=255) gtGAACTAATTTTTTGGAGTATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TTTTCG‑C‑GGGGAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCg < 2:2419057/136‑1 (MQ=255) aTGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGGAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCg < 2:6356217/137‑1 (MQ=255) aTGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGGAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCg < 2:8101168/137‑1 (MQ=255) aTGAACTAACTTTTTGGAATATTGAGAGAAGGGGGGTTTGTTACAGAGGTGTTGGGT‑TTTTTG‑G‑GGGTAA‑ACCTTCTCCTACACACGTGCCTCAAGATTTTTG‑CACTGGAGGAGTGGGTTTACCCGCGAAAGGGCCg < 1:11674188/137‑1 (MQ=255) ttttGGAATATTTATAGAGGGGGGATTTGTTACAGAGGTGCCTGGC‑TCTTCG‑C‑GGGTAA‑ACCCGTTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTa < 2:11717514/137‑1 (MQ=39) tGGAATATTGATAGAGGGGGGATTTTTTACAGAGGTGCCGGGC‑TCTTCG‑CGGGGA‑A‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CATTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTc < 1:8102508/137‑1 (MQ=38) gAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTGA‑AACCACTCCCCCCCACACGCCCCCAAAGCTGTG‑CACCGTAGGAGAGGGTTTCCCCCCAAAAAGGACAGAACAAGTTTCCTCgg > 1:6348950/1‑137 (MQ=255) gAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCgg > 1:16316407/1‑137 (MQ=255) gatTTAGAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTGGGAGCGGTTTCACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAgg < 2:14240342/136‑1 (MQ=39) tttATAGAAGGGGGATTTGTTACAGAGGTGCCGGGT‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc < 2:10002410/137‑1 (MQ=255) ttAGAGAGGGGGGATTTGTGAAGGAGGTGCTGGGCTTTTTGG‑G‑GGGA‑A‑ACCCTCTCCGACACACATTCCTAAAGATTTTTG‑CACTGTGGGAGTGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCg < 1:3477422/137‑1 (MQ=255) tgtaGAAGGGGGATTTGTTACGGAGGTGCCGGGC‑TTTTCG‑C‑GGGTAA‑ACCCACTCCTACACACATGCCTCAAGATCTGTG‑CATTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGc < 2:5294034/135‑1 (MQ=38) gATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTCCACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTCCCCGCGAAAAGGCCGGAACAGGTTTCCTCGGAGGCCGCAGTCCCAAGGa > 1:3784148/1‑137 (MQ=38) gATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTCCACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGa > 2:1466499/1‑137 (MQ=255) gATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGa > 2:15873970/1‑137 (MQ=255) aTTTGTTAAAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTCCACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAAAAGGTTTACTCGGAGGCCGCAGTCCCGAGGaa > 2:7103556/1‑137 (MQ=39) tACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTGA‑ACCCACTCCCCCACCCCCACCCCCAAACCTTTGTCAC‑GTCGGAGCGGGTTTTCCCCCGAAAAGGCCGGAACAGGGTTCCTCTGAGGCCACAATCCCAAAGAAccttcg > 1:1352789/1‑132 (MQ=255) tACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcg > 2:7661718/1‑137 (MQ=255) aCAGAGGTGCCGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGGAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcgc < 2:6558080/137‑1 (MQ=255) ccGGGC‑TCTTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCATCAAGGTCTGTG‑CCTTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTCCTCGGAGGCCGCAGTCCCGAGGAACTTGCACAAGAACCGc > 2:2020677/1‑137 (MQ=38) ccGGGC‑TCTTCG‑C‑GGGTAA‑ACCCACCCCTCCACACATGCCTCCAAATCTTTG‑CACCTTAGGAGCGGGTTTCCCCGCGAAAGGGCCGGAACAGGTTTCCTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAAAACTGc > 1:8308567/1‑137 (MQ=37) cGGGC‑TCTTCGTG‑GGGA‑A‑ACCTGCTCCTACACACATGCCTCAAGGTCTGTG‑CATTGGAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGcc < 1:240769/137‑1 (MQ=38) ggC‑TCTTCG‑C‑GGGGAA‑ACCCGCTCCTACACACGTGCCTCAAGATCTGGG‑CACTGGAGGAGTGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc < 1:3130340/137‑1 (MQ=255) tttCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTAAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTAc < 2:1386275/136‑1 (MQ=255) ctTCG‑C‑GGGTAA‑ACCCGCTCCTACACACATGCCTCAAGATCTGTT‑CACTGGAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTAc < 2:16112022/137‑1 (MQ=255) cg‑c‑gGGTAA‑ACCCGCTCCTCCACACCTGCCTCAAAATCTGTG‑CACTGTAGGAGCGGGTTTCCCCGCGAAAGGGCCGGAACAAGTTTCCTCGGAGGCCGCAGTCCCAAAGAACTTGCGCAAGGACTGCCGCGTACAct > 1:15683189/1‑137 (MQ=255) g‑c‑gGGTAA‑ACCCGCTCCTCCACACATGTCTCAAGATCTGTG‑TAATGTAGGAGCGGGTTTACCCGAGAAAGGGCCGGAACAGGGTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGctt > 1:11341745/1‑136 (MQ=38) gggA‑A‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTTGAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCAGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGttcttc < 1:11965475/137‑1 (MQ=39) | GCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGC‑TCTTCG‑C‑GGGT‑A‑ACCCGCTCCTACACACATGCCTCAAGATCTGTG‑CACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTC > AE015451_phaM1/278606‑278875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |