| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AE015451_phaM1 | 2,586,636 | Δ39,187 bp | [PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type)]–[PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)] | 42 genes [PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type)], PP_5507 CDS (protein of unknown function), PP_2267 CDS (putative Phage single‑stranded DNA‑binding protein), PP_2268 CDS (Phage endodeoxyribonuclease I), PP_2269 CDS (putative N‑acetylmuramoyl‑L‑alanine amidase), PP_2270 CDS (putative DNA primase_helicase protein), PP_5508 CDS (conserved protein of unknown function), PP_5509 CDS (conserved exported protein of unknown function), PP_5510 CDS (protein of unknown function), PP_2272 CDS (conserved protein of unknown function), PP_5511 CDS (protein of unknown function), PP_2273 CDS (DNA polymerase I from phage origin), PP_2274 CDS (conserved protein of unknown function), PP_2275 CDS (conserved protein of unknown function), PP_2276 CDS (putative phage exonuclease), PP_2277 CDS (conserved protein of unknown function), PP_2278 CDS (conserved protein of unknown function), PP_5512 CDS (protein of unknown function), PP_2279 CDS (Head‑to‑tail joining protein), PP_2280 CDS (conserved protein of unknown function), PP_2281 CDS (putative Capsid assembly protein), PP_5513 CDS (conserved protein of unknown function of phage origin), PP_2282 CDS (Minor capsid protein 10), PP_2283 CDS (Tail tubular protein A), PP_2284 CDS (Tail tubular protein B), PP_5514 CDS (conserved protein of unknown function), PP_2285 CDS (conserved exported protein of unknown function), PP_2286 CDS (conserved protein of unknown function), PP_2287 CDS (Phage internal core protein), PP_2288 CDS (Phage tail fiber protein), PP_2289 CDS (conserved exported protein of unknown function), PP_2290 CDS (conserved protein of unknown function), PP_2291 CDS (conserved protein of unknown function), PP_2292 CDS (conserved protein of unknown function), PP_2293 CDS (DNA maturase B), PP_2294 CDS (conserved exported protein of unknown function), PP_5515 CDS (protein of unknown function), PP_5516 CDS (protein of unknown function), PP_5517 CDS (conserved exported protein of unknown function), PP_2295 CDS (putative antirestriction protein), PP_2296 CDS (conserved protein of unknown function), [PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451_phaM1 | 2586636 | 2625822 | 39187 | 916 [0] | [0] 958 | [PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type)]–[PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)] | [PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type)],PP_5507 CDS (protein of unknown function),PP_2267 CDS (putative Phage single‑stranded DNA‑binding protein),PP_2268 CDS (Phage endodeoxyribonuclease I),PP_2269 CDS (putative N‑acetylmuramoyl‑L‑alanine amidase),PP_2270 CDS (putative DNA primase_helicase protein),PP_5508 CDS (conserved protein of unknown function),PP_5509 CDS (conserved exported protein of unknown function),PP_5510 CDS (protein of unknown function),PP_2272 CDS (conserved protein of unknown function),PP_5511 CDS (protein of unknown function),PP_2273 CDS (DNA polymerase I from phage origin),PP_2274 CDS (conserved protein of unknown function),PP_2275 CDS (conserved protein of unknown function),PP_2276 CDS (putative phage exonuclease),PP_2277 CDS (conserved protein of unknown function),PP_2278 CDS (conserved protein of unknown function),PP_5512 CDS (protein of unknown function),PP_2279 CDS (Head‑to‑tail joining protein),PP_2280 CDS (conserved protein of unknown function),PP_2281 CDS (putative Capsid assembly protein),PP_5513 CDS (conserved protein of unknown function of phage origin),PP_2282 CDS (Minor capsid protein 10),PP_2283 CDS (Tail tubular protein A),PP_2284 CDS (Tail tubular protein B),PP_5514 CDS (conserved protein of unknown function),PP_2285 CDS (conserved exported protein of unknown function),PP_2286 CDS (conserved protein of unknown function),PP_2287 CDS (Phage internal core protein),PP_2288 CDS (Phage tail fiber protein),PP_2289 CDS (conserved exported protein of unknown function),PP_2290 CDS (conserved protein of unknown function),PP_2291 CDS (conserved protein of unknown function),PP_2292 CDS (conserved protein of unknown function),PP_2293 CDS (DNA maturase B),PP_2294 CDS (conserved exported protein of unknown function),PP_5515 CDS (protein of unknown function),PP_5516 CDS (protein of unknown function),PP_5517 CDS (conserved exported protein of unknown function),PP_2295 CDS (putative antirestriction protein),PP_2296 CDS (conserved protein of unknown function),[PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451_phaM1 | = 2586635 | 0 (0.000) | 915 (1.160) | 138/270 | 0.1 | 100% | intergenic (+541/‑1) | PP_t39 tRNA (tRNA‑Leu)/PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type) | –/– |
| ? | AE015451_phaM1 | 2625823 = | 0 (0.000) | intergenic (+1/‑299) | PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)/PP_t40 tRNA (tRNA‑His) | –/– | |||||
Only 100 of 915 total aligned reads displayed.
CGCGCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATTCCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/2586499‑2586635‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGT > AE015451_phaM1/2625823‑2625958 CGCGCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTT < 2:13736223/137‑1 GCGCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTT > 2:3903862/1‑137 GCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGG < 2:16156340/137‑1 GCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGG < 1:2658579/137‑1 GCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGG > 1:6239037/1‑137 CAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGA > 1:16570081/1‑137 CAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGA < 1:4560104/137‑1 CTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTT < 2:239904/137‑1 GGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTG > 1:2282342/1‑137 CCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGT < 1:2928960/137‑1 CCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGT < 2:4518309/137‑1 ACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGG > 1:15130181/1‑137 ATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCT > 2:1646378/1‑137 ATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCT < 2:7277685/137‑1 ATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCT > 2:15312802/1‑137 TCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTC < 1:14309461/137‑1 TCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTC < 2:6872236/137‑1 TCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTC < 1:5105165/137‑1 TCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTC < 2:10170657/137‑1 TCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTC < 1:10784909/137‑1 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG < 1:4710708/137‑1 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG > 2:2107793/1‑137 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG < 2:15006634/137‑1 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG > 2:2982981/1‑137 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG < 2:8545710/137‑1 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG > 1:16188430/1‑137 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG > 1:15817115/1‑137 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG > 2:5366487/1‑137 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG < 1:14648072/137‑1 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCATTAGAGACATCCTTAAAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG > 2:9587186/1‑137 CGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAG > 1:9902839/1‑137 CGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAG > 2:3298820/1‑137 CGCGGACCCAAAATTGGATTCCTTAGCGACGCCCTCTGAGATGACCCTTAGAAACATCCGTAGCCATGATTACTCAATGATGATTAATAAGATA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGACAGAG > 2:12640333/1‑137 CGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTA > 2:10679904/1‑137 GACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGG > 2:9298794/1‑137 GACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGG < 1:8407677/137‑1 ACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGC > 2:2782235/1‑137 ATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGC < 1:171745/137‑1 ATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGC < 2:17144074/137‑1 TAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGG < 1:637330/137‑1 CCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCA < 1:8554659/137‑1 CCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCA < 2:11092576/137‑1 TCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAA > 1:1048118/1‑137 TCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAA > 1:4443323/1‑137 TCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAA > 2:16779391/1‑137 TGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAAC < 1:65654/137‑1 GAGATTACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACG < 2:15679172/137‑1 GACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCG < 2:8874170/137‑1 GACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCG < 2:12057602/137‑1 GACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCG < 2:13381512/137‑1 CTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGAC > 2:14501266/1‑137 CTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGAC > 1:6991592/1‑137 GAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACAC < 1:12789196/137‑1 GACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCG < 1:17539097/137‑1 GACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTATGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCG > 2:12343557/1‑137 GACATCCTGAGAAATGATGACGTAATGATGATTACTAAGAGA‑TCTCTTTTTGGGATACATTTTCTTATTCTTGGCTCGGGCAGAGGAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCG < 2:11707585/137‑1 CTTAGAAATGATTACTTAATGCTGATTACTAAGAGA‑TCCCTTTTTGGGGCACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACAC > 2:3695986/1‑137 CTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACAC > 1:480036/1‑137 CTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACAC > 2:17400669/1‑137 CTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACAC > 1:4155001/1‑137 CTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACAC > 2:13897507/1‑137 CTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACAC > 2:8297305/1‑137 CTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACAC > 1:15527318/1‑137 CTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACAC > 1:9341040/1‑137 CTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACAC > 1:339471/1‑137 CTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACAC > 1:8093653/1‑137 CTTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACAC > 1:7682232/1‑137 TTAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACCCACCGGGACACA > 2:11372948/1‑137 TAGAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCGGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACAT < 2:10544754/137‑1 GAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGG > 2:9818378/1‑137 GAAATGATTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGG > 2:13074837/1‑137 TTACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACT > 1:791911/1‑137 ACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGCCCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTG > 2:7976255/1‑137 ACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTG > 2:1425317/1‑137 ACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTG > 1:8898338/1‑137 ACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTG > 2:570132/1‑137 ACTTAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTG > 2:4343553/1‑137 TAATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGA < 1:11619509/137‑1 ATGATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACA > 1:16856088/1‑137 ATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGTCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGA < 1:9099721/137‑1 ATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGA < 1:5593232/137‑1 ATGATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGA < 2:5182813/137‑1 GATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAAT < 1:13214440/137‑1 GATTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAAT < 2:4887205/137‑1 TTACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTT < 1:11905412/137‑1 TACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTA < 1:12432301/137‑1 ACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAG > 1:1915360/1‑137 ACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAG > 1:3898061/1‑137 ACTAAGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAG > 2:17672204/1‑137 AGAGA‑TCCCTTTTTTGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCTGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCTGGACACATGGGGACACTTGGGACACGAATTTAGCGTT < 2:17036513/137‑1 AGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTT < 1:5856739/137‑1 AGAGA‑TCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTT < 1:10273736/137‑1 gaTCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCA < 2:6401651/135‑1 gaTCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCA < 2:7733536/135‑1 gaTCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCA < 2:6025434/135‑1 gaTCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCA < 2:14754758/135‑1 ccTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTG > 1:14107344/3‑137 CTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTG > 1:13683013/1‑137 CTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTG > 1:10000484/1‑137 TTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGT > 1:11295723/1‑137 CGCGCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATTCCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/2586499‑2586635‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGT > AE015451_phaM1/2625823‑2625958 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |