| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AE015451_phaM1 | 3,412,992 | Δ35,612 bp | [PP_3026 CDS (putative Phage recombinase)]–PP_5557 CDS (protein of unknown function) | 47 genes [PP_3026 CDS (putative Phage recombinase)], PP_3027 CDS (conserved protein of unknown function), PP_3028 CDS (conserved protein of unknown function), PP_3029 CDS (DNA cytosine methyltransferase family protein), PP_3030 CDS (conserved exported protein of unknown function), prtN CDS (Transcription regulatory protein PrtN), PP_3032 CDS (DNA‑binding protein Roi‑related protein), PP_5552 CDS (conserved protein of unknown function), PP_5553 CDS (conserved protein of unknown function), PP_3033 CDS (putative transcriptional repressor_ CI_C2 family), PP_3034 CDS (putative Regulator protein), PP_3035 CDS (conserved protein of unknown function), PP_5554 CDS (protein of unknown function), PP_3036 CDS (conserved protein of unknown function), PP_5555 CDS (conserved protein of unknown function), PP_3037 CDS (C4‑type zinc finger protein_ DksA_TraR family), PP_3038 CDS (Pyocin R2_PP_ traC domain protein), PP_3039 CDS (conserved protein of unknown function), PP_3040 CDS (Pyocin R2_PP_ holin), PP_3041 CDS (conserved protein of unknown function), PP_3042 CDS (putative Terminase_ large subunit), PP_3043 CDS (conserved protein of unknown function), PP_3044 CDS (Phage portal protein_ lambda family), PP_3045 CDS (putative ClpP protease), PP_3046 CDS (conserved protein of unknown function), PP_3047 CDS (conserved protein of unknown function), PP_3048 CDS (conserved protein of unknown function), PP_3049 CDS (conserved protein of unknown function), PP_3050 CDS (conserved protein of unknown function), gpV CDS (Pyocin R2_PP_ tail spike protein), PP_3052 CDS (conserved protein of unknown function), gpW CDS (Pyocin R2_PP_ baseplate protein), gpJ CDS (Pyocin R2_PP_ baseplate_tail fiber protein), gpI CDS (Pyocin R2_PP_ tail formation protein), PP_3056 CDS (putative Pyocin R2_PP_ tail fiber protein), PP_3057 CDS (putative pectinesterase), PP_3058 CDS (conserved protein of unknown function), PP_3059 CDS (putative tail sheath protein), PP_3060 CDS (putative tail sheath protein), PP_3061 CDS (conserved protein of unknown function), PP_3062 CDS (putative Pyocin R2_PP_ tail length determination protein), gpU CDS (Pyocin R2_PP_ tail formation protein), PP_3064 CDS (Phage tail protein), gpD CDS (Pyocin R2_PP_ tail formation), PP_3066 CDS (Pyocin R2_PP_ lytic enzyme), PP_5556 CDS (putative bacteriophage lysis protein), PP_5557 CDS (protein of unknown function) |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451_phaM1 | 3412992 | 3448603 | 35612 | 1093 [0] | [0] 1095 | [PP_3026 CDS (putative Phage recombinase)]–PP_5557 CDS (protein of unknown function) | [PP_3026 CDS (putative Phage recombinase)],PP_3027 CDS (conserved protein of unknown function),PP_3028 CDS (conserved protein of unknown function),PP_3029 CDS (DNA cytosine methyltransferase family protein),PP_3030 CDS (conserved exported protein of unknown function),prtN CDS (Transcription regulatory protein PrtN),PP_3032 CDS (DNA‑binding protein Roi‑related protein),PP_5552 CDS (conserved protein of unknown function),PP_5553 CDS (conserved protein of unknown function),PP_3033 CDS (putative transcriptional repressor_ CI_C2 family),PP_3034 CDS (putative Regulator protein),PP_3035 CDS (conserved protein of unknown function),PP_5554 CDS (protein of unknown function),PP_3036 CDS (conserved protein of unknown function),PP_5555 CDS (conserved protein of unknown function),PP_3037 CDS (C4‑type zinc finger protein_ DksA_TraR family),PP_3038 CDS (Pyocin R2_PP_ traC domain protein),PP_3039 CDS (conserved protein of unknown function),PP_3040 CDS (Pyocin R2_PP_ holin),PP_3041 CDS (conserved protein of unknown function),PP_3042 CDS (putative Terminase_ large subunit),PP_3043 CDS (conserved protein of unknown function),PP_3044 CDS (Phage portal protein_ lambda family),PP_3045 CDS (putative ClpP protease),PP_3046 CDS (conserved protein of unknown function),PP_3047 CDS (conserved protein of unknown function),PP_3048 CDS (conserved protein of unknown function),PP_3049 CDS (conserved protein of unknown function),PP_3050 CDS (conserved protein of unknown function),gpV CDS (Pyocin R2_PP_ tail spike protein),PP_3052 CDS (conserved protein of unknown function),gpW CDS (Pyocin R2_PP_ baseplate protein),gpJ CDS (Pyocin R2_PP_ baseplate_tail fiber protein),gpI CDS (Pyocin R2_PP_ tail formation protein),PP_3056 CDS (putative Pyocin R2_PP_ tail fiber protein),PP_3057 CDS (putative pectinesterase),PP_3058 CDS (conserved protein of unknown function),PP_3059 CDS (putative tail sheath protein),PP_3060 CDS (putative tail sheath protein),PP_3061 CDS (conserved protein of unknown function),PP_3062 CDS (putative Pyocin R2_PP_ tail length determination protein),gpU CDS (Pyocin R2_PP_ tail formation protein),PP_3064 CDS (Phage tail protein),gpD CDS (Pyocin R2_PP_ tail formation),PP_3066 CDS (Pyocin R2_PP_ lytic enzyme),PP_5556 CDS (putative bacteriophage lysis protein),PP_5557 CDS (protein of unknown function) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451_phaM1 | = 3412991 | 0 (0.000) | 1069 (1.320) | 138/262 | 0.0 | 100% | coding (1/1626 nt) | PP_3026 CDS (putative Phage recombinase) | |
| ? | AE015451_phaM1 | 3448604 = | 0 (0.000) | intergenic (‑472/‑199) | PP_5557 CDS (protein of unknown function)/PP_3067 CDS (conserved protein of unknown function) | –/– | |||||
Only 100 of 1095 total aligned reads displayed.
GATCCAGTCATCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/3412852‑3412991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtaCGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACGGGGC > AE015451_phaM1/3448604‑3448739 TCATCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGC < 1:11142748/137‑1 CATCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCC < 1:6159603/137‑1 ATCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCG < 2:16782336/137‑1 TCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGG > 1:7778846/1‑137 TCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCAGGTTGGAGTGAAATCAGGGTACGGCCGG > 1:10007777/1‑137 TTGATGATTTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGT < 2:7585217/137‑1 TTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGT < 2:18297341/137‑1 ATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGT < 2:13631706/137‑1 ATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGT < 2:13091804/137‑1 TGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTT < 1:13432228/137‑1 TGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTT < 1:14781587/137‑1 GATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTTTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTG < 2:11547634/137‑1 TCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCT < 1:17656400/137‑1 GTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGA > 1:5081276/1‑137 GTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGA > 2:8049137/1‑137 GTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGA > 1:6886835/1‑137 GTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGA > 1:981984/1‑137 GTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGA < 1:18572134/137‑1 GTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGA < 2:4529335/137‑1 TGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAG < 1:16208150/137‑1 ATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGG > 2:2820364/1‑137 ATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGG < 1:5860500/137‑1 ATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGG < 2:7178377/137‑1 ATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGG < 2:14759881/137‑1 ATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGT < 1:15552245/137‑1 ATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGT < 1:18153713/137‑1 ATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGT < 1:18329771/137‑1 ATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGT > 2:4833390/1‑137 ATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGT < 1:9662494/137‑1 ATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGT < 1:17009860/137‑1 ATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGT < 2:4993446/137‑1 ATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGT < 2:11771962/137‑1 ATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGT < 1:12186593/137‑1 CCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGG < 1:8146987/137‑1 CAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGA < 2:5886753/137‑1 CAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGA < 1:7235827/137‑1 CAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGA < 2:9718406/137‑1 CAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGA < 1:202845/137‑1 AGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAG > 1:3749853/1‑137 GCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTG < 2:13960290/137‑1 GCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTG < 1:16617002/137‑1 GCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTG < 1:12897744/137‑1 AGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGC > 1:15898136/1‑137 GGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCA > 2:14942564/1‑137 GGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGATGATAGAGGAGGTGGTACGGAGCTGTGGGCA > 1:11372702/1‑137 GCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCAT < 2:10157804/137‑1 CGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGT < 1:432690/137‑1 GCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTG < 2:8591217/137‑1 ATGTGTTTTTTTGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCAGGAGTAGTTGGGCTGCTAGAGGAGGTGGTACGGAGATGTGGGCATGCCTTGTTTTGATGC > 2:10358659/1‑137 ttTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGA < 1:13102191/135‑1 CGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAA > 2:14328390/1‑137 CGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAA > 2:8354422/1‑137 CGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACAGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAA > 1:11718221/1‑137 TGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAAT < 2:4164564/137‑1 CGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGA < 2:5253939/137‑1 AAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATC < 2:18523845/137‑1 AAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATC < 1:10844725/137‑1 GGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCAT < 2:15172030/137‑1 AATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAAT > 1:14055508/1‑137 AATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAAT > 2:643358/1‑137 AATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAAT > 1:14990893/1‑137 AATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAAT > 1:8375182/1‑137 AATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAAT > 2:15526481/1‑137 TATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCACTGGCT > 1:14518428/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAG > 1:6392274/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAG > 2:2326678/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAG > 2:16057285/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAG > 2:11295274/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAG > 1:8790455/1‑137 CTGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCAGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAG > 1:4863024/1‑137 TGGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATC > 2:12817468/1‑120 GGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGTTGTGGGCATGCCTTGGTTTGATGCCGAATTTAGAAAAATAAGATCATCATCAATGGCTTAGGAGCT > 2:13325119/1‑137 GGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCT > 2:17709774/1‑137 GGCTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCT > 1:6684324/1‑137 CTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTT > 1:3384585/1‑137 CTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTT > 2:6734008/1‑137 CTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTT > 1:391411/1‑137 CTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTT > 1:17374955/1‑137 CTTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTT > 2:3192321/1‑137 TTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTC > 2:9138975/1‑137 TTTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTC > 1:15158139/1‑137 TTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCC > 2:7371904/1‑137 TTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCC > 1:16787122/1‑137 TTCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCC < 2:370242/137‑1 TCCCGGTTGGAGTGAACTCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCag > 2:17241439/1‑135 TCCCGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCG > 2:12037811/1‑137 CCGTTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGATGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCTCT > 2:306151/1‑137 CGGTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTT > 1:904357/1‑137 GTTGGAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGG < 1:15342760/137‑1 GAGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGG > 1:12624769/1‑137 AGTGAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGA < 1:3105030/137‑1 GAAATCAGGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGC > 2:1577721/1‑137 AATCAGGGTACGGCCGGAGTAGTTGGGCTGATATAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATCTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAA < 2:10957364/137‑1 GGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACG < 1:7131572/137‑1 GGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACG < 1:2703999/137‑1 GGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACG < 2:12425656/137‑1 GGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACG < 1:5465702/137‑1 GGGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACG < 2:16389307/137‑1 GGTACGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACGG < 2:9555491/137‑1 GGTACGGCCGGAGTAGTTGGGCTGACAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACGG < 1:10298354/137‑1 GATCCAGTCATCATTGATGATGTCGTTTGGATTTTCAATCCCCAGGCAGCTAGGCTGTTGGCGCGCTCATGTGTTTTTTGGCGTGTCCGGTGAAGGGTAATATATACTCTGGCTTTCCCGGTTGGAGTGAAATCAGGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/3412852‑3412991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtaCGGCCGGAGTAGTTGGGCTGATAGAGGAGGTGGTACGGAGCTGTGGGCATGCCTTGGTTTGATGCTGAATTTAGAAAAATACGATCATCATCAATGGCTTAGGAGCTTTCCGCTTGGTCGGAAGCAATGACGGGGC > AE015451_phaM1/3448604‑3448739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |