| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AE015451_phaM1 | 4,372,651 | Δ54,766 bp | PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type)–[PP_3920 CDS (putative Phage integrase)] | 78 genes PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type), PP_3850 CDS (conserved protein of unknown function), PP_5637 CDS (conserved protein of unknown function), PP_3851 CDS (conserved protein of unknown function), PP_3852 CDS (conserved protein of unknown function with BNR domain), PP_5638 CDS (conserved protein of unknown function), PP_3854 CDS (Lysozyme), PP_5639 CDS (conserved exported protein of unknown function), PP_3855 CDS (conserved protein of unknown function), PP_3856 CDS (conserved protein of unknown function), PP_3857 CDS (conserved protein of unknown function), PP_3858 CDS (putative Tail fiber protein), PP_3859 CDS (conserved protein of unknown function), PP_3860 CDS (Phage FluMu protein gp47), PP_3861 CDS (Phage FluMu protein gp46), PP_3862 CDS (putative Phage assembly protein), PP_3863 CDS (putative Phage tail protein), PP_3864 CDS (putative Phage FluMu DNA circulation protein), PP_3865 CDS (putative Phage tail protein), PP_5640 CDS (conserved protein of unknown function), PP_3866 CDS (conserved protein of unknown function), PP_3867 CDS (putative Phage tail tube protein), PP_3868 CDS (Group II intron‑encoding maturase), PP_3869 CDS (putative Phage sheath protein), PP_3870 CDS (Phage FluMu protein gp38), PP_3871 CDS (conserved protein of unknown function), PP_3873 CDS (conserved protein of unknown function), PP_3874 CDS (conserved protein of unknown function), PP_3875 CDS (conserved protein of unknown function), PP_3876 CDS (conserved protein of unknown function), PP_3877 CDS (conserved protein of unknown function), PP_3878 CDS (putative Phage minor capsid protein C), PP_3879 CDS (Phage portal protein_ HK97 family), PP_3880 CDS (conserved exported protein of unknown function), PP_3881 CDS (putative Phage terminase_ large subunit), PP_3882 CDS (putative Phage terminase_ small subunit), PP_3883 CDS (putative Phage holin), PP_3884 CDS (Phage holin_ lambda family), PP_5641 CDS (conserved protein of unknown function), PP_3886 CDS (conserved protein of unknown function), PP_3887 CDS (conserved protein of unknown function), PP_3888 CDS (conserved protein of unknown function), PP_3889 CDS (putative Phage integrase), PP_3890 CDS (conserved protein of unknown function), ybcO CDS (conserved protein of unknown function), PP_3892 CDS (conserved protein of unknown function), PP_3893 CDS (putative Phage DNA helicase), PP_3894 CDS (putative Phage replication protein O), PP_3895 CDS (putative Regulatory protein Cro), PP_3896 CDS (Transcriptional regulator_ Cro_CI family), PP_3897 CDS (conserved protein of unknown function), PP_3898 CDS (conserved protein of unknown function), PP_5643 CDS (conserved protein of unknown function), PP_5644 CDS (conserved membrane protein of unknown function), PP_3899 CDS (conserved protein of unknown function_ hicB family), PP_3900 CDS (hypothetical protein), PP_3901 CDS (conserved protein of unknown function), PP_3902 CDS (conserved protein of unknown function), PP_3903 CDS (conserved protein of unknown function), PP_3904 CDS (conserved protein of unknown function), PP_3905 CDS (Transcriptional regulator_ LuxR family), PP_3906 CDS (conserved protein of unknown function), PP_3907 CDS (conserved protein of unknown function), PP_3908 CDS (conserved protein of unknown function), PP_3909 CDS (conserved protein of unknown function), PP_3910 CDS (conserved protein of unknown function), PP_3911 CDS (conserved protein of unknown function), PP_3912 CDS (DNA‑cytosine methyltransferase), PP_3913 CDS (protein of unknown function), PP_5645 CDS (conserved protein of unknown function), PP_3914 CDS (conserved protein of unknown function), PP_5646 CDS (protein of unknown function), PP_3915 CDS (conserved protein of unknown function), PP_3916 CDS (conserved protein of unknown function), PP_5647 CDS (conserved protein of unknown function), PP_3917 CDS (conserved protein of unknown function), PP_3919 CDS (conserved protein of unknown function), [PP_3920 CDS (putative Phage integrase)] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451_phaM1 | 4372651 | 4427416 | 54766 | 906 [0] | [1] 978 | PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type)–[PP_3920 CDS (putative Phage integrase)] | PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type),PP_3850 CDS (conserved protein of unknown function),PP_5637 CDS (conserved protein of unknown function),PP_3851 CDS (conserved protein of unknown function),PP_3852 CDS (conserved protein of unknown function with BNR domain),PP_5638 CDS (conserved protein of unknown function),PP_3854 CDS (Lysozyme),PP_5639 CDS (conserved exported protein of unknown function),PP_3855 CDS (conserved protein of unknown function),PP_3856 CDS (conserved protein of unknown function),PP_3857 CDS (conserved protein of unknown function),PP_3858 CDS (putative Tail fiber protein),PP_3859 CDS (conserved protein of unknown function),PP_3860 CDS (Phage FluMu protein gp47),PP_3861 CDS (Phage FluMu protein gp46),PP_3862 CDS (putative Phage assembly protein),PP_3863 CDS (putative Phage tail protein),PP_3864 CDS (putative Phage FluMu DNA circulation protein),PP_3865 CDS (putative Phage tail protein),PP_5640 CDS (conserved protein of unknown function),PP_3866 CDS (conserved protein of unknown function),PP_3867 CDS (putative Phage tail tube protein),PP_3868 CDS (Group II intron‑encoding maturase),PP_3869 CDS (putative Phage sheath protein),PP_3870 CDS (Phage FluMu protein gp38),PP_3871 CDS (conserved protein of unknown function),PP_3873 CDS (conserved protein of unknown function),PP_3874 CDS (conserved protein of unknown function),PP_3875 CDS (conserved protein of unknown function),PP_3876 CDS (conserved protein of unknown function),PP_3877 CDS (conserved protein of unknown function),PP_3878 CDS (putative Phage minor capsid protein C),PP_3879 CDS (Phage portal protein_ HK97 family),PP_3880 CDS (conserved exported protein of unknown function),PP_3881 CDS (putative Phage terminase_ large subunit),PP_3882 CDS (putative Phage terminase_ small subunit),PP_3883 CDS (putative Phage holin),PP_3884 CDS (Phage holin_ lambda family),PP_5641 CDS (conserved protein of unknown function),PP_3886 CDS (conserved protein of unknown function),PP_3887 CDS (conserved protein of unknown function),PP_3888 CDS (conserved protein of unknown function),PP_3889 CDS (putative Phage integrase),PP_3890 CDS (conserved protein of unknown function),ybcO CDS (conserved protein of unknown function),PP_3892 CDS (conserved protein of unknown function),PP_3893 CDS (putative Phage DNA helicase),PP_3894 CDS (putative Phage replication protein O),PP_3895 CDS (putative Regulatory protein Cro),PP_3896 CDS (Transcriptional regulator_ Cro_CI family),PP_3897 CDS (conserved protein of unknown function),PP_3898 CDS (conserved protein of unknown function),PP_5643 CDS (conserved protein of unknown function),PP_5644 CDS (conserved membrane protein of unknown function),PP_3899 CDS (conserved protein of unknown function_ hicB family),PP_3900 CDS (hypothetical protein),PP_3901 CDS (conserved protein of unknown function),PP_3902 CDS (conserved protein of unknown function),PP_3903 CDS (conserved protein of unknown function),PP_3904 CDS (conserved protein of unknown function),PP_3905 CDS (Transcriptional regulator_ LuxR family),PP_3906 CDS (conserved protein of unknown function),PP_3907 CDS (conserved protein of unknown function),PP_3908 CDS (conserved protein of unknown function),PP_3909 CDS (conserved protein of unknown function),PP_3910 CDS (conserved protein of unknown function),PP_3911 CDS (conserved protein of unknown function),PP_3912 CDS (DNA‑cytosine methyltransferase),PP_3913 CDS (protein of unknown function),PP_5645 CDS (conserved protein of unknown function),PP_3914 CDS (conserved protein of unknown function),PP_5646 CDS (protein of unknown function),PP_3915 CDS (conserved protein of unknown function),PP_3916 CDS (conserved protein of unknown function),PP_5647 CDS (conserved protein of unknown function),PP_3917 CDS (conserved protein of unknown function),PP_3919 CDS (conserved protein of unknown function),[PP_3920 CDS (putative Phage integrase)] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451_phaM1 | = 4372650 | 0 (0.000) | 872 (1.070) | 129/264 | 0.1 | 99.9% | intergenic (‑1235/‑337) | PP_5636 CDS (protein of unknown function)/PP_3849 CDS (putative calcium‑binding protein_ hemolysin‑type) | –/– |
| ? | AE015451_phaM1 | 4427417 = | 1 (0.000) | intergenic (+1/+101) | PP_3920 CDS (putative Phage integrase)/PP_t61 tRNA (tRNA‑Cys) | –/– | |||||
Only 100 of 914 total aligned reads displayed.
CTAACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/4372512‑4372650‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaTGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACG > AE015451_phaM1/4427417‑4427552 AACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGA < 1:694593/137‑1 AACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGA < 1:6359107/137‑1 AACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGA < 2:1527883/137‑1 AACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGA < 2:18250245/137‑1 AACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGA < 1:13039219/137‑1 ACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGAT > 1:16005115/1‑137 TTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAG < 1:6548345/137‑1 TTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAG < 1:5011087/137‑1 TCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTG < 2:16302626/137‑1 TCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTG > 2:2668246/1‑137 TCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTGACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTG < 1:7686628/137‑1 CGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGG < 2:17161238/137‑1 CGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGG < 2:16714175/137‑1 GATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTTATGAAGTTTTGGG > 2:11747832/1‑137 GATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGG > 1:18606757/1‑137 ATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGA > 1:15201755/1‑137 ATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGA > 2:14281087/1‑137 AGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACT < 2:10898148/137‑1 GTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTG > 2:6088897/1‑137 ATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCT < 1:13672202/137‑1 TCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTC < 2:10551838/137‑1 TCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTC < 1:9722471/137‑1 TCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTC < 2:3581366/137‑1 GTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAG > 2:3193023/1‑137 GTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAG > 2:13631146/1‑137 GTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAG > 2:8533439/1‑137 GTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAG > 1:10881152/1‑137 CAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTT < 2:8893799/137‑1 GGGCTGGTCTTACACTCAACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGACGTTTTTGGACCAGTCCAACTTAGTTCTGagc > 1:9276027/1‑134 GGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGA < 2:4007360/137‑1 GGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGA < 2:2927997/137‑1 GGGCTGGTCTTACAATAAACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGA < 2:1025373/137‑1 GCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACT < 1:17386233/137‑1 GGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCG > 1:331245/1‑137 TAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGCAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCT > 2:7898072/1‑137 TAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCT > 2:11149817/1‑137 CGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGC > 2:9277901/1‑137 CGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGC > 1:14103317/1‑137 CGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGC > 2:12358059/1‑137 CGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGC > 2:7174094/1‑137 CGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGC > 1:12352008/1‑137 GGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCG > 2:18072892/1‑137 GGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCG > 1:10039046/1‑137 CCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCA > 1:16327222/1‑137 AGCCACGGACGATTTATCTGGCATCAAGAAAATCGTAGTGTAATTTGAAAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAG > 2:13392471/1‑137 GCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGA > 1:16917378/1‑137 CGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAA < 1:8230244/137‑1 CGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAA < 1:2766821/137‑1 GACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACC < 2:5727283/137‑1 ACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCC < 1:18297739/137‑1 ACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCC < 2:12081681/137‑1 CGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCC < 2:6805358/137‑1 CGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCC < 2:5541293/137‑1 CGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCC < 1:1120343/137‑1 CGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCC < 2:15997787/137‑1 CGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCC > 2:6547084/1‑137 TCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCT > 1:4705765/1‑137 CTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTC < 1:13239938/137‑1 CTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTC < 1:9979771/137‑1 CTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTC < 2:770950/137‑1 ATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGG < 1:14646946/137‑1 CAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCT < 1:2329240/137‑1 CAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCT < 1:7120108/137‑1 AAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTG > 2:4725916/1‑137 GAACATCTTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGAGGAAGTTTTGGGACTGGTCTCAGTTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCG < 2:13891411/137‑1 GAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCG < 1:11426891/137‑1 GAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCG < 1:15734570/137‑1 GAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCG < 2:3854832/137‑1 ACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGG < 1:14528135/137‑1 CGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTT > 1:13818023/1‑137 CGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTT > 2:17504769/1‑137 CGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAAACCCGCAACCTCAATGGCTGCGGGGCTT > 1:4397405/1‑137 GTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTT < 1:7460688/137‑1 GTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTT < 2:2276570/137‑1 GTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTT < 1:12622413/137‑1 TAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTC < 2:13094227/137‑1 AGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCG > 1:17712929/1‑137 AGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCG < 1:6046910/137‑1 TGTCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCC > 1:13511850/1‑107 TCATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATG < 2:11483261/137‑1 CATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGG > 1:9009242/1‑137 CATTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGG > 1:8015981/1‑137 TTTGACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTG > 1:16738698/1‑137 GACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAG > 2:2015983/1‑137 GACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAG < 1:14804261/137‑1 GACAGAAATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAG < 1:3875978/137‑1 ATCTGGCTTACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGG > 1:10499213/1‑137 TACTCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATC > 1:5752644/1‑137 TCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAA < 1:8462836/137‑1 TCATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAA < 1:12223818/137‑1 ATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACC > 2:16985143/1‑137 ATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACC > 2:15009457/1‑137 ATATACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACC > 1:119371/1‑137 TACACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGC < 2:5114710/137‑1 CACTGATGAAGTTTTGGGCCTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGT > 2:4292177/1‑137 CACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGT < 2:15593157/137‑1 CACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGT < 2:12544928/137‑1 CACTGATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGT > 2:9468459/1‑137 GATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGAC > 2:8288731/1‑137 ATGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACG > 1:3555307/1‑137 CTAACAATTCCCTCGATAGTAAATCTTTCGTCAGGGCGGGCTGGTCTTACAATAGACGGCCAAGCCACGGACGATTTATCTGGCATCAAGAACATCGTAGTGTCATTTGACAGAAATCTGGCTTACTCATATACACTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/4372512‑4372650‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaTGAAGTTTTGGGACTGGTCTCAATTAGTTTTGGGACTTCGGTGTTTTCCTGCGCGCAAAGAAAAACCCCGCAACCTCAATGGCTGCGGGGCTTTCGAATGGTGGAGGCCGAGGTCGGAATCGAACCGGCGTAGACG > AE015451_phaM1/4427417‑4427552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |