Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AE015451_phaM14,675,3340AG27.2% 241.6 / 12.6 150intergenic (+33/+71)PP_4137 CDS (putative Outer membrane siderophore receptor)/chrR CDS (Chromate reductase)–/–
Reads supporting (aligned to +/- strand):  ref base A (36/71);  new base G (0/40);  total (39/111)
Fisher's exact test for biased strand distribution p-value = 2.06e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 152 total aligned reads displayed.

CCGTGACGCCGGCCTACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCG  >  AE015451_phaM1/4675201‑4675470
                                                                                                                                     |                                                                                                                                        
ccGTGACGCCGGCCTACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGGTTGCCCGCGAAGGCGTCCTTg                                                                                                                                       >  1:18272935/1‑137 (MQ=255)
  gTGACGCCGGCCTACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCCCGAACGCGTCACTgca                                                                                                                                     >  2:8819427/1‑135 (MQ=255)
    gACGCCGGCCTACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGGGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAAtt                                                                                                                                   <  2:5435663/137‑1 (MQ=255)
      cGCCGGCCTACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTg                                                                                                                                 <  1:16746952/137‑1 (MQ=255)
      cGCCGGCCTACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTg                                                                                                                                 <  1:16746911/137‑1 (MQ=255)
      cGCCGGCCTACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGGTTCCCCCCCACCGCGTCACTTAACTTg                                                                                                                                 >  2:13994112/1‑137 (MQ=255)
        ccGGCCTACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGc                                                                                                                                <  2:17288597/136‑1 (MQ=255)
              tACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCTGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCa                                                                                                                         <  2:1951805/137‑1 (MQ=255)
              tACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGNTTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCa                                                                                                                         <  1:15055818/137‑1 (MQ=255)
              tACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCa                                                                                                                         <  1:176527/137‑1 (MQ=255)
              tACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCa                                                                                                                         <  2:1367731/137‑1 (MQ=255)
               aCAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCAt                                                                                                                        <  2:2943752/137‑1 (MQ=255)
                cAACGACGCCGGCCAGGACGATTCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAGGGCGTCATTGAATTTGCCGACGCAtt                                                                                                                       <  1:14740757/137‑1 (MQ=255)
                    gacgCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTcgcg                                                                                                                   <  2:14518073/137‑1 (MQ=255)
                    gacgCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCGGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTcgcg                                                                                                                   <  2:12797945/137‑1 (MQ=255)
                         tctccAGGACACTACCCTTTCGCCACCGGGCGAATGATTTGGCGCGTCTGCCTGTGTTTCCTACATCTCCCTCTGCCGGGGGGGCGCGGGTTTACCCGCGAATGCTTCATTGAATTTGCCGACTCCTTCGCGGTTaa                                                                                                              <  2:13332818/134‑1 (MQ=255)
                         ctgctaGGACAATTCCCGTTCGACACCGGGCGAAGGATTTGTCGTGTATGCCGGTTTTCCCTCCAGCTTCCTCTGACGGGTGGTCGCGGTTTTACCCGCGAATGCGTCATTAAATTTTCCAACGCATTCGCGGGTaa                                                                                                              <  2:11986891/132‑1 (MQ=255)
                         cGGCCAGGACACTTCCCGTTCGACACCGGGCGAAGGATTTTGCGTGTATGCTGGGTTTTCCTACCGCTTCCGCTGACGGGTGGGCGCGGTTTTACCCGCGAGTGCGTCGTTGAATTTGCCGACGAATTCGTGGGGaa                                                                                                              <  2:7522116/137‑1 (MQ=255)
                         cGGCCAGGACAATGCCTGTTCGACACCGGGCGAAGGATTTGGTGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCAAATGCTTCATTGAATTTGCCGACGCATTCGCGGGGaa                                                                                                              <  2:4070549/137‑1 (MQ=39)
                         cGGCCAGGACAATGCCCGTTCGACACCGGTCGAAGGATTTGGCGTGTATACCGGGGTTTCCTACAGCCTCCTCGGACGGGTGGGCGCGGGTTTACCCACGAAGGCGCCATTGAATTTGCCGACGCATTCGCGGGGaa                                                                                                              <  2:18280052/137‑1 (MQ=38)
                         cGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTAGGCCGGGGTTTCCTACATCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCGTTGAATTTGCCGACGCGTTCGCGGGGaa                                                                                                              <  2:10763975/137‑1 (MQ=39)
                          ggCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTTCCCACGAACGCGTCCTTGGATTTTCCCCCGCACTCTCCGGTaaa                                                                                                             >  2:11599212/1‑137 (MQ=255)
                            caaGGACAATTCCTGTTAAACACTGGGCGAAGGGTTTGGCGTGTATGCTGGGGTTTCCTACAGCTTCTGCTGATGGGTGGGCGTGGGTTTACCCGCGAATGCGTCATGGAATTTTCCGACGCGTTCGCGGGCAAAcc                                                                                                           <  1:8869572/135‑1 (MQ=255)
                              ggaaCAATGCCCGTTCGACACCGGGCGAAGGGTTTGGCGTGGGTGCTGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTGACCTGCGAATGTGTCGTTGAGTTTGCCGACGCGTTCGCGGGGAAACCCg                                                                                                         <  2:12311468/134‑1 (MQ=255)
                              aGGACAATTCCCTTTCGACACCGGGGGAAGGATTTGGCGTGTGTGCCGGGGTTTCCTACATCTTCCGTGGATGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGGAAACCCg                                                                                                         <  1:13791710/137‑1 (MQ=37)
                              aGGACAATTCCCGTTCGACACCGGGCGAAGGATTTGGCGTGCATGCTGGGTTTCCCTACAGCTTCCGCTGACGGGTGGACGCGGGTTTACCCGCGAATGCGTCATGGACTTTGCCAACGCATTCGCGGGTAAACCCg                                                                                                         <  2:14952226/137‑1 (MQ=38)
                              aGGACAATGCCTGTTCAACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCGGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCGTTGAATTTGCCGACGCATTCGTGGGGAAACCCg                                                                                                         <  2:16986957/137‑1 (MQ=38)
                              aGGAAAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATTCGTCATTGAATTTGCCGACGCGTCCGCGGGTAAACCCg                                                                                                         <  2:6527017/137‑1 (MQ=255)
                              aGGAAAAGGCCCGTTCGACACTGGGCGAAGAATTTGGCGTGTGTTCTGGGGTTTCCTACATCTTCCTCTGACGGGTGGGCGCGGGTTTACCCGCGAGTGCTTCATTGAATTTGCTGACGCATTCGCGGGGAAACCCg                                                                                                         <  2:2823951/137‑1 (MQ=255)
                                      gCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACATCTTCCGCGGATGGGTGGGCGCGGGTTTACCCGCGAATGCGTCGTTGAATTTGCCGACGCATTCGCGGGGAAACCCGCTCCTaca                                                                                                 <  1:13426727/137‑1 (MQ=38)
                                      gCCCGTTAGACACCGGGCGAAGGATTTGGCGTGTATGCTGGGGTTTCCTACAGCTTCCGCGGATGGGGGGGCGCGGGTTTACCCGTGAATGCGTCGTTGAATTTGCCGACGCGTTCGCGGGGAAACCCGCTCCTaca                                                                                                 <  2:2102375/137‑1 (MQ=255)
                                      acccGTTCGACACCGTGCGAAGGATTTGTCGTGCATGCCTGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGTTTTACCCGCGAGTGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTaca                                                                                                 <  2:10388502/136‑1 (MQ=38)
                                         cGTTCGACACCGGGCGAAGGGTTTGGTGTGGATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAg                                                                                              <  1:10153056/137‑1 (MQ=255)
                                         cGTTCGACACCGGGCGAAGGATTTGGAGTGTATGCTGGGGTTTTCTACAGCTTCCTCTGATGGGTGGGCGCGGGTTGACCCGTAAATGCGTCGTTGAATTTGCTGATGCATTTGCGGGGAAACCCGCTCCTACACAg                                                                                              <  2:8576370/137‑1 (MQ=255)
                                                    ggtcGAAGGGTTTGGTGTGTATGCTGGTGTTTCCTACGGCTTCCGCTGACGGGTGGGCGAGGGTTTACCCGCGAGTGTTTCATTGAGTTTGCCGACGAATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGcac                                                                                   <  2:10202344/134‑1 (MQ=255)
                                                    gggTGAAGGATTTGTCGGGTAGCCCGGGTTTTCCTACAGCTTCCGTTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGcac                                                                                   <  2:18396341/137‑1 (MQ=37)
                                                    gggCGAAGGGTTTGGCGTGTATTCCGGGGTTTCCTACACCCTCCCCTGACGGGTGGGCGCGGGTTTACCCGCGGGTGCGTCATTGAATTTGCCGACGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGcac                                                                                   <  2:6922112/137‑1 (MQ=37)
                                                    gggCGAAGGGTTGGGGGTGGGGGCGGGGGTTTCCGACATTTCCTGCTGACGGGGGGGCGTGGGTTGACCCGGGAAGGTGGAGTGGAGTTTGACGACGAGTTAGTGGGGAAACCCGCTCCTACACAGGGGCGTTGcac                                                                                   <  2:2346936/137‑1 (MQ=255)
                                                    gggCGAAGGATTTGGCGTGTATGCGGGGTTTTCCTACATCTTCCGCGGATGGGGGGGCGCGGGTTTACCCGCGAATGCTTCATGGAATTTGCCGACGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGcac                                                                                   <  2:12469070/137‑1 (MQ=37)
                                                    gggCGAAGGATTGGGCGGGGATGCCGGGGTTTCCGACAGCTTCCGCGGATGGGTGGGCGCGGGTTGACCCGTGAATGTGTCATGGAGTTTGCCGACGCGTTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGcac                                                                                   <  2:7978200/137‑1 (MQ=255)
                                                    gggCGAAGGATTGGACGTGGATGCCGGGTTTTCCCACATCTCCCGCGGACGGGGGGGTGCGGGTTTACCCGCGAATGCTTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGcac                                                                                   <  1:9225088/137‑1 (MQ=25)
                                                    gggAGAGGGGTTTGGTGTGGGTGCTGGGGTTTCCTACATCTTCCGCGGACGGGGGGGCGCGGGTTTACCAGAGAATGGGTAGTGGAATTTGCAAACGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGcac                                                                                   <  1:10609562/137‑1 (MQ=255)
                                                    gggAGAAGGGTTTGGTGTGGAGTCTGGGTTTTCCTACGCCTTCCGCGGACGGGGGGGCGTGGGTTTACCCGCGAGTGTGTCGTGGAGTTTGCCGACGTGTTCTCGGGGAACCCCGCTCCTACACAGGGGCGTTGcac                                                                                   <  1:17235528/137‑1 (MQ=255)
                                                         aaGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGGGGGCGCGGGTTTACCCGTGAATGCGTCATTGAATTTGCCGACACATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCAcagcag                                                                              <  2:16300248/137‑1 (MQ=255)
                                                           gggtttGGTGTGTGTTCCGGGGTTTCCTACAGCTCCCTTTGACGGGTGGTCGAGGGTTGACCCGAGAATTCTTCATTGACTTTCCCGAAACGTTCGCGGGCAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGa                                                                            <  1:7574644/134‑1 (MQ=255)
                                                           gggtttGGTGTGTAGGCTGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGTGGGTTTACCCGCGAGTGCGTTGTTGACTTTTCCAACGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGa                                                                            <  1:15006316/134‑1 (MQ=255)
                                                           ggATTTGGCGTGGATGCTGGGGTTTCTCACATCTCCCACTGACGGGTGGGCGTGGTTTTACCTGCGAATGCGTCATTGAGTTTGCCGACGCATTCTTGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGa                                                                            <  2:9484507/137‑1 (MQ=255)
                                                           gagttgggCGTGTATGCTGGGGTTTCCTACAGCTTCCGCGGATGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCAGTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGa                                                                            <  2:13699596/131‑1 (MQ=37)
                                                            gATTTGGTTTGTATTCTGGGGTTTCCTACGTCTTCTTCTGACGGGTGGGTGAGGGTTTACCCGCGAATGCGTAGTTGAATGTGCCGGCGCGTTTGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGAt                                                                           <  2:1780304/137‑1 (MQ=21)
                                                            gATTTGGCGTGTATACTGGGTTTTCCTACAGCTTCCGCTGAGGGGTGGGCGAGGGTTTACCTGCAAATGCGCCATTGAGTTTGCCGACGCATTCGAGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGAt                                                                           <  2:7583488/137‑1 (MQ=255)
                                                            gATTTGGCGTGGATGCCGGGGTTCCCTACAGCTCCCTCTGACGGGTGGGCACGGGTTTACCCGCGAATGTGCAGTGGAATTTGCCGACGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGAt                                                                           <  2:16075453/137‑1 (MQ=25)
                                                                tGGCGTGTGTGCTGGGGTTTCCTACAGCTTCCTCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATGGAATTTGCCGACGCGTTCGTGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAgg                                                                       <  1:12499851/137‑1 (MQ=38)
                                                                     tggaTGTCGGGGTTTCCGACAGCCCCCGCTGCCGTTTGGGCGTGGTTTCACCCGCGAATTCTTCGTGGACTTTGCCGACGTATTCTTGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTATTGGTTc                                                                  <  2:8439037/134‑1 (MQ=255)
                                                                        gtGCGGGGGTTTCCTACGTTTTCTGTGGAGGGGGGGGGGTGGGTTTACCCGAAAATGTGTCGTGGAGTTTGCTGAGGCGTTCGTGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGa                                                               <  1:8206472/136‑1 (MQ=255)
                                                                        ctGCCGGGGTTCCTTACATCTTCCCTTGACGGGTTGGCACGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGa                                                               <  2:6889771/136‑1 (MQ=37)
                                                                         tGCTGGGGTTCCCTACATCTTCCGCTGACGGGTGGGCGCGGGTTTACCAGCGAATGCGTCGTTGAGTTGGCCGACGCATTTGTGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGAc                                                              <  1:15423361/137‑1 (MQ=255)
                                                                         tGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGGTTTCCCCCAAACACGTCACTGAAGTTTTCGAAGCACTCGAAGGGAGAACACATCCCACAAAGGGGAGGTGAACAACAAGAGTAGGGGTTcgaaa                                                              >  2:16421539/1‑133 (MQ=255)
                                                                          gctggggTTTCCTACATCTTCCGTGGAGGGGGGGGTGTGGGTTTACCTGCGAGTGTGTCGGGGGGTTTGCCGACGCGTTCGGGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGAcc                                                             <  1:6597131/134‑1 (MQ=255)
                                                                          gctggggTTTCCTACAGCTTCCGCTGACGGGGGGGTGTGGGTTTACCCGCGAATGTGTCGTGGAGTTTGCCGACGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGAcc                                                             <  1:13296926/134‑1 (MQ=37)
                                                                          gCCGGGGTTTCCTACGGTTTCCGTGGATGGGTGGGTGTGGGTTGACCTGCGAGTGCGTAGTTGAGTTTGCCGACGCGTTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGAcc                                                             <  1:17367390/137‑1 (MQ=255)
                                                                          gCCGGGGTTTCCTACAGTTTCCGCTGACGGGTGGGCGGGGGTTTACCCGAGAATGTGTCGTGGAATTTGCTGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGAcc                                                             <  1:16934255/137‑1 (MQ=38)
                                                                               ggTTTCCTACACCTTCCTCTGACGGGTGGGCGCGGTTTTCCCCGCGAGTTTTTCATTGAATTTGCCGAGGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCt                                                        <  2:11278516/137‑1 (MQ=255)
                                                                                ttttCCTCCAGCTTCCACTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCGTTGAATTTGCCGACGCAGTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTg                                                       <  2:12943087/136‑1 (MQ=38)
                                                                                          tctcccGCTGACGGGTGGGCATGGGTTTACCCGCGAGTTCGTCATTGAATTTGCCGACGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCa                                             <  1:18376996/133‑1 (MQ=38)
                                                                                           tttCCGTGGATGGGTGGGCGGGGGTTTACCCGCGAGTGTGTCGTGGAATTTGCCGACGCATTCGTGGGGAACCCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCAc                                            <  1:1230722/136‑1 (MQ=255)
                                                                                           ctcccGCTGACTGTTGGTCGCGGGTTCACCTGTGAATGCGTCATTGAATTTGCCGACGCATTCGTGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCAc                                            <  2:14669613/134‑1 (MQ=38)
                                                                                           cTTCCGCTGACGGGGGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCAc                                            <  2:6383301/137‑1 (MQ=255)
                                                                                           cTTCCGCGGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCAc                                            <  2:16885842/137‑1 (MQ=255)
                                                                                                gCTGACGGGTGGGCGCGGGTTTTCCCCCAAACCCGTCACTTAAATTTTCGACGCAATCTCGGTGAAACCCGCTCCCCCACCAAGGGGTTGCACAACAAGATTCGGGGGGCAAACCACCCCGTTTCACCTCCCCCacg                                       >  2:17627574/1‑135 (MQ=255)
                                                                                                  tGATGGGTGGGCGGGGGTTTACCCGAGAATGCGTCGTTGAGTTTGCCGATGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGAc                                     <  2:15298906/137‑1 (MQ=255)
                                                                                                  tGACGGGTGGGCGCGGGTTTACCCGCGAGTGCGTCATTGAATTTGCCGACGCATTCGCGGGCAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGAc                                     <  1:12932985/137‑1 (MQ=255)
                                                                                                  ggACGGGTGGGCGCGGGTTCACCAGCGAGTGTGTCGTGGAATTTGCCGACGCGTTTGTGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGAc                                     <  2:1638246/136‑1 (MQ=255)
                                                                                                     cGGGTGGGCGTGGGTTGACCCGCGAGTTCTTCGTGGAATTTCCCAACGTGTTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCa                                  <  1:6681417/137‑1 (MQ=255)
                                                                                                           ttcgcgGGTTTACCCGCGAATGCGTCATTGAATTTGCCGAAGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTCCAACTTCACCCATGACGCAAACCTg                            >  1:17890894/3‑137 (MQ=255)
                                                                                                              gcgGGTTTACCCGCGAATGCGTCATTGAGTTTGCCGACGCATTTGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCg                         <  1:6183778/137‑1 (MQ=255)
                                                                                                              gcgGGTTCACCCGCGAAGGCTTCGTGGAATTTGCCGACACATTCGTGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCg                         <  1:3546461/137‑1 (MQ=255)
                                                                                                                   tttACCCGCGAATGCGTCGTTGAGTTTGCCGACGCATTCGCGGGGAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACaaa                    <  2:6975755/137‑1 (MQ=255)
                                                                                                                      aCCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGc                 >  2:1261762/1‑137 (MQ=255)
                                                                                                                        ccGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCt               >  1:4259619/1‑137 (MQ=255)
                                                                                                                         cgcgAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAAACCGCCCCTACACAGGGGCGTTGCACAACAGGACTAGGGGTTCAGACCACCCTGTTCCACTTCACCCATGACGCAAACATGTCGACAAAcagccg              >  2:18332099/1‑132 (MQ=38)
                                                                                                                              aTGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGa         >  2:13903397/1‑137 (MQ=255)
                                                                                                                              aTGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGa         >  1:13108833/1‑137 (MQ=255)
                                                                                                                              aTGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGa         >  1:6975755/1‑137 (MQ=255)
                                                                                                                               tGCGTCATTGAATTTGCCGACGCATTCGTGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGAAGCAAACCTGTCGAAAAACGCCTGCAAGaa        >  2:12850634/1‑137 (MQ=255)
                                                                                                                               tGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACGGGGGCGTTGCACAGCAGGATTAGGGGCTCAGACCGCACTGTTCAAATTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGaa        >  2:4539064/1‑137 (MQ=255)
                                                                                                                               tGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGaa        >  2:9515109/1‑137 (MQ=255)
                                                                                                                               tGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGaa        >  1:13652593/1‑137 (MQ=255)
                                                                                                                               tGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGaa        >  2:17769969/1‑137 (MQ=255)
                                                                                                                               tGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGaa        >  1:4640725/1‑137 (MQ=255)
                                                                                                                               tGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGaa        >  1:7782987/1‑137 (MQ=255)
                                                                                                                               tGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGaa        >  2:1130441/1‑137 (MQ=255)
                                                                                                                               tGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGAAAAACGCATGCAAGaa        >  2:17944660/1‑137 (MQ=255)
                                                                                                                               tGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGANTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGaa        >  1:16069110/1‑137 (MQ=255)
                                                                                                                               tGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGANTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACATGTCGACAAACGCCTGCAAGaa        >  1:16069109/1‑137 (MQ=255)
                                                                                                                                    cATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTc   >  1:17388521/1‑137 (MQ=255)
                                                                                                                                    cATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTc   >  1:17388561/1‑137 (MQ=255)
                                                                                                                                    cATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTc   >  1:9554152/1‑137 (MQ=255)
                                                                                                                                    cATGGAATTTGCCGACACGTTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTc   <  1:320514/137‑1 (MQ=255)
                                                                                                                                     aTTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcg  >  2:8986204/1‑137 (MQ=255)
                                                                                                                                     aTTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcg  >  1:8421275/1‑137 (MQ=255)
                                                                                                                                     |                                                                                                                                        
CCGTGACGCCGGCCTACAACGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCG  >  AE015451_phaM1/4675201‑4675470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑