| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AE015451_phaM1 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 CDS (Monooxygenase_ DszC family) ← / ← sctC CDS (sulfur compound ABC transporter ‑ ATP‑binding subunit) | –/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451_phaM1 | 278,742 | 1 | . | A | 95.9% | 2750.2 / 103.2 | 847 | intergenic (‑237/+77) | PP_0224 CDS (Monooxygenase_ DszC family)/sctC CDS (sulfur compound ABC transporter ‑ ATP‑binding subunit) | –/– |
| Reads supporting (aligned to +/- strand): ref base . (6/28); new base A (401/387); total (432/415) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.48e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 980 total aligned reads displayed.
GCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTC > AE015451_phaM1/278606‑278872 | tGATCGCGACAGACGTGTGCTGTTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aa < 1:13332125/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aa < 1:12513979/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aa < 2:11209571/137‑1 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aa < 2:17067784/137‑1 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aaac < 1:5374266/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aaac < 2:3756838/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aaac < 2:14123059/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aaac < 1:4608974/137‑3 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCGAATGAGTTATAAAATTTTTATGAACTAACTTTTGGGAATATTTATAGAAGGGGGATTTGTTACAGAGTTGCCGGGCTCTTCG‑C‑GGGT‑aaac < 2:17821300/137‑3 (MQ=255) tCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aaacc < 2:14273902/137‑4 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aaacccg > 1:7181928/1‑132 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aaacccg > 1:19219546/1‑132 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aaacccg > 1:17302108/1‑132 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aaacccg > 2:13940625/1‑132 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aa < 1:14736028/132‑1 (MQ=255) gtgtGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTacac < 2:3565110/137‑1 (MQ=255) gtgtGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTacac < 2:5639749/137‑1 (MQ=255) tgtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTacaca < 1:6600857/137‑1 (MQ=255) tgtgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGATGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTacaca < 2:10906160/137‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGc > 1:12143988/1‑137 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCt < 1:8756419/137‑1 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCt < 2:16767130/137‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACCCACATGCCTCaa > 1:10905050/1‑137 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCaa < 1:3007811/137‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCaa < 1:3355771/137‑1 (MQ=255) cggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCaa > 2:13812969/1‑137 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCt < 1:18275870/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCt < 2:13096505/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCt < 2:17416206/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCt < 1:8520618/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCt < 2:6994000/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCt < 2:12691288/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATGTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCt < 1:2004839/137‑1 (MQ=255) gtccggtATATATACCCTAATGATTGATAAAATTTTTATGAACTAACTTTGTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCt < 1:10029049/137‑1 (MQ=255) gtccggtATATATACCCTAACGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCt < 2:6539106/137‑1 (MQ=255) gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGAt > 2:4745729/1‑130 (MQ=255) gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCa > 2:2487093/1‑137 (MQ=255) gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCa < 1:3749406/137‑1 (MQ=255) gtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACACGCCTCAAGATCTGTGCa > 2:11517279/1‑137 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 1:16239658/137‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 2:1573571/137‑1 (MQ=255) ataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAg < 1:14175360/137‑1 (MQ=255) aCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGCATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTTCTACACACATGCCTCAAGGTCTGTGCACTGTAGGa > 1:15895631/1‑137 (MQ=255) aCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGa > 1:7682109/1‑137 (MQ=255) cccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAg > 2:18870818/1‑137 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCt < 1:18801402/119‑1 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg > 2:16120067/1‑137 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg > 2:11904134/1‑137 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACACGCCTCAAGATCTGTGCACTGTAGGAGCggg > 2:5350224/1‑137 (MQ=255) aaTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGATCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg > 2:7473703/1‑137 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGGACTATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGt > 1:2527398/1‑137 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTCAACCCGCTCCTACCCCCATGCCTCAAGGTCTGTGCACTGTAGGAGCGGGt > 1:5855183/1‑137 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTCCACACATGCCTCCAGATCTGTGCACTGTAGGAGCGGGt > 1:137827/1‑137 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTCCACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGt > 2:5063606/1‑137 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAAATCTGTGTACTGTAGGAGAGGGt > 1:6861831/1‑137 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAAACCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGt > 2:8255005/1‑137 (MQ=255) aTGATTTATAAAATTTTTATGAACTAACTTTTTGAAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGGTCTGTGCACTGTAGGAGCGGGt > 2:15339500/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTCAACCCGCTCCTACACACATGCCTCAAGATTTTTGCCCTGTAAGAGCGGGttt > 1:4007154/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGttt > 2:714969/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGttt > 2:2077895/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGttt > 2:9319279/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGttt > 2:9729988/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGttt > 2:5732566/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGttt > 1:8280988/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGttt > 1:9049969/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCACTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGAGGGttt > 1:968746/1‑137 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAAACCGCTCCTCCACACATGCCTCAAGATCTGTGCACTGTAGGAGAGGGttt > 1:17832251/1‑137 (MQ=255) aTTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACCGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACCCATGCCTCAAGATGTGTGCACTGTAGGAGCAGGtttc > 1:18524158/1‑136 (MQ=39) tttATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAc > 2:13579257/1‑137 (MQ=255) aaaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgcg > 2:18715934/1‑137 (MQ=255) cttttcATGAACTACTTTTTTGGAACGTTCAGAGAGGGGGGTTTTGTTACAGAGGTTCCGGTCTCTTCG‑T‑GGGTAAACCCGCTCCTACACACGTTCCCCAAGATTTGGGCATGGTGGGAGCGGGTTTACCCGCGaaa < 1:6400885/136‑1 (MQ=255) tttttATGAACTAACTTTTTGGAATATTTAGAGAAGGGGGGTTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATCCCTCAAGATCTGTGCACTGGAGGAGCGGGTTTACCCGCGAAAg < 2:4487349/137‑1 (MQ=255) tttttAGGAACTAACTTTTTGGAATATTTAGAGAAGGGGGATTTGTTACAGGGGTGCCGGGCTCTTCGTG‑GGGA‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGGAGGAGCGGGTTTACCCGCGAAAg < 1:15582948/137‑1 (MQ=255) gAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCgg > 2:3214295/1‑137 (MQ=255) aaTATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTCCCCGCGAAAGGGCCGGAACAGGTTTACTCGGa > 1:10476000/1‑137 (MQ=255) tatTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCCTTTCG‑C‑GGGGAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAgg < 2:1041123/137‑1 (MQ=39) tatTTAGAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAgg < 2:8014937/137‑1 (MQ=255) tttATAGAAGGGGGATTTGTGACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCCCCTACACACATTCCTCAAGATCTGTGCACTGTAGGAGCGGGTTGACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc < 1:14462124/137‑1 (MQ=39) tataGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTCCCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGc > 2:10026375/1‑137 (MQ=255) tataGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGc > 2:16492637/1‑137 (MQ=255) gggtttGTGACATATGTCCTGGGCTTTTCG‑CGGGGA‑AACCATCTCCTACACACGTTCCCCAAGATCTGTGCACTGTGGGAGCGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAgg < 1:4359505/134‑1 (MQ=255) ggATTTGTTACAGGGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCTTACACACGTGCCTCAAGATCTGTGCACTGTGGGAGCGGTTTTACTCGCGAAGGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAgg < 2:14874054/137‑1 (MQ=255) gATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAAATCTGTGCACTGTAGGAGCGGGTTTCCCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGa > 1:16994560/1‑137 (MQ=255) gATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑aa > 2:6013242/1‑36 (MQ=255) tttGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCtgt < 1:4924493/66‑1 (MQ=255) tttGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAAc > 2:18368299/1‑137 (MQ=255) tgtgACAGAGGTTCCGGGCTCTTCG‑C‑GGGTAAACCCGCGCCTACACACATGCCTCAAGATCTGTGCACTGTATGAGCGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACtt < 2:12253631/137‑1 (MQ=255) tGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACtt > 2:18059788/1‑137 (MQ=255) ggTGCCGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCCCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCAGAACAGGTTTACTCTGAGGCCGCAGTCCCGAGGAACTTGCGCAAGaa > 2:2944291/1‑137 (MQ=39) ccGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTCCCCACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTCCCCGCGAAAAGGCCAGAACAGGTTTACTCGGAGGCCTCCGTCCCGAGGAACTTGCGCAAGAACTGc > 1:9305947/1‑137 (MQ=255) ccGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTCCACACCTGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTGCCCGCGGAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAATCCCAAGGAAACTGCGCCAGAACTGc > 1:16681385/1‑137 (MQ=255) ccGGGCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGTCTCAAGATCTGTGCAATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGc > 2:8793419/1‑137 (MQ=255) tgggCTTTTTA‑C‑GGGTAAACCCTCCTCTACACACTTGCCTCAAGATTTGTGCACTGTGGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGcc < 1:11575476/136‑1 (MQ=37) cGGCCTCTTCGTG‑GGGA‑AACCCCCTCCTACACACGTGCCTCAAGATCTGTGCACTGGAGGAGTGGTTTCACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGcc < 1:15066532/137‑1 (MQ=255) gggCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGGACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcg > 2:19344570/1‑137 (MQ=255) gggCTCTTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTCCTCGGAGGCCGCAGTCCCGAGGAACTTGAGCAAGAACTGCcg > 2:8459546/1‑137 (MQ=255) ctctTCG‑C‑GGGTAAACCCGCTCCTCCACACATGCCCCAAGGTCTGTGCAATGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTCCTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGt > 2:4009112/1‑137 (MQ=38) ctTCG‑C‑GGGTAAACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTAc < 2:7709078/137‑1 (MQ=255) ctTCG‑C‑GGGTAAACCCACCCCTACACACATGCCTCAAAATCGGTGCACTGTGGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTAc < 1:12807472/137‑1 (MQ=38) g‑c‑gGGTAAACCCGCTCCTCCACACATGCCTCAAGATCTGTGCACTGTCAGAGCGGGTTTACCCGCAAAAGGGCCGGAACAGGTTTCCCCGGAAGCCGCCGTCCCAAGGAACTTGCGCAAGAACCGCCACGTACGctc > 2:6189662/1‑137 (MQ=255) | GCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCG‑C‑GGGT‑AACCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTC > AE015451_phaM1/278606‑278872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |