| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AE015451_phaM1 | 2,586,629 | 39194 bp→CCATTT | PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type)–[PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)] | 42 genes PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type), PP_5507 CDS (protein of unknown function), PP_2267 CDS (putative Phage single‑stranded DNA‑binding protein), PP_2268 CDS (Phage endodeoxyribonuclease I), PP_2269 CDS (putative N‑acetylmuramoyl‑L‑alanine amidase), PP_2270 CDS (putative DNA primase_helicase protein), PP_5508 CDS (conserved protein of unknown function), PP_5509 CDS (conserved exported protein of unknown function), PP_5510 CDS (protein of unknown function), PP_2272 CDS (conserved protein of unknown function), PP_5511 CDS (protein of unknown function), PP_2273 CDS (DNA polymerase I from phage origin), PP_2274 CDS (conserved protein of unknown function), PP_2275 CDS (conserved protein of unknown function), PP_2276 CDS (putative phage exonuclease), PP_2277 CDS (conserved protein of unknown function), PP_2278 CDS (conserved protein of unknown function), PP_5512 CDS (protein of unknown function), PP_2279 CDS (Head‑to‑tail joining protein), PP_2280 CDS (conserved protein of unknown function), PP_2281 CDS (putative Capsid assembly protein), PP_5513 CDS (conserved protein of unknown function of phage origin), PP_2282 CDS (Minor capsid protein 10), PP_2283 CDS (Tail tubular protein A), PP_2284 CDS (Tail tubular protein B), PP_5514 CDS (conserved protein of unknown function), PP_2285 CDS (conserved exported protein of unknown function), PP_2286 CDS (conserved protein of unknown function), PP_2287 CDS (Phage internal core protein), PP_2288 CDS (Phage tail fiber protein), PP_2289 CDS (conserved exported protein of unknown function), PP_2290 CDS (conserved protein of unknown function), PP_2291 CDS (conserved protein of unknown function), PP_2292 CDS (conserved protein of unknown function), PP_2293 CDS (DNA maturase B), PP_2294 CDS (conserved exported protein of unknown function), PP_5515 CDS (protein of unknown function), PP_5516 CDS (protein of unknown function), PP_5517 CDS (conserved exported protein of unknown function), PP_2295 CDS (putative antirestriction protein), PP_2296 CDS (conserved protein of unknown function), [PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451_phaM1 | 2586629 | 2625822 | 39194 | 982 [0] | [0] 1112 | PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type)–[PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)] | PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type),PP_5507 CDS (protein of unknown function),PP_2267 CDS (putative Phage single‑stranded DNA‑binding protein),PP_2268 CDS (Phage endodeoxyribonuclease I),PP_2269 CDS (putative N‑acetylmuramoyl‑L‑alanine amidase),PP_2270 CDS (putative DNA primase_helicase protein),PP_5508 CDS (conserved protein of unknown function),PP_5509 CDS (conserved exported protein of unknown function),PP_5510 CDS (protein of unknown function),PP_2272 CDS (conserved protein of unknown function),PP_5511 CDS (protein of unknown function),PP_2273 CDS (DNA polymerase I from phage origin),PP_2274 CDS (conserved protein of unknown function),PP_2275 CDS (conserved protein of unknown function),PP_2276 CDS (putative phage exonuclease),PP_2277 CDS (conserved protein of unknown function),PP_2278 CDS (conserved protein of unknown function),PP_5512 CDS (protein of unknown function),PP_2279 CDS (Head‑to‑tail joining protein),PP_2280 CDS (conserved protein of unknown function),PP_2281 CDS (putative Capsid assembly protein),PP_5513 CDS (conserved protein of unknown function of phage origin),PP_2282 CDS (Minor capsid protein 10),PP_2283 CDS (Tail tubular protein A),PP_2284 CDS (Tail tubular protein B),PP_5514 CDS (conserved protein of unknown function),PP_2285 CDS (conserved exported protein of unknown function),PP_2286 CDS (conserved protein of unknown function),PP_2287 CDS (Phage internal core protein),PP_2288 CDS (Phage tail fiber protein),PP_2289 CDS (conserved exported protein of unknown function),PP_2290 CDS (conserved protein of unknown function),PP_2291 CDS (conserved protein of unknown function),PP_2292 CDS (conserved protein of unknown function),PP_2293 CDS (DNA maturase B),PP_2294 CDS (conserved exported protein of unknown function),PP_5515 CDS (protein of unknown function),PP_5516 CDS (protein of unknown function),PP_5517 CDS (conserved exported protein of unknown function),PP_2295 CDS (putative antirestriction protein),PP_2296 CDS (conserved protein of unknown function),[PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451_phaM1 | = 2586628 | 0 (0.000) | 978 (1.130) +CCATTT |
128/258 | 0.1 | 100% | intergenic (+534/‑8) | PP_t39 tRNA (tRNA‑Leu)/PP_2266 CDS (DNA‑directed RNA polymerase_ bacteriophage and mitochondrial type) | –/– |
| ? | AE015451_phaM1 | 2625823 = | 0 (0.000) | intergenic (+1/‑299) | PP_2297 CDS (putative integrative genetic element Ppu40_ integrase)/PP_t40 tRNA (tRNA‑His) | –/– | |||||
Only 100 of 1024 total aligned reads displayed.
CGGGGCCGCGCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/2586493‑2586628‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGT > AE015451_phaM1/2625823‑2625958 |||||| CGCGCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTT < 2:6792125/137‑1 GCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGG > 1:1790198/1‑137 GCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGG < 2:3834131/137‑1 GCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCAACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGACTAATTAATGATAATTACTAAGAGGTCCCTTTTTGG > 2:14005820/1‑137 CAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGA > 1:895279/1‑137 CAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGA > 2:9286548/1‑137 CAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGA > 1:3475179/1‑137 CAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGA > 1:4246662/1‑137 CAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGA > 1:13749853/1‑137 CAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGA > 2:3366495/1‑137 CAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGA > 2:3198905/1‑137 CTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTT < 2:12925724/137‑1 CCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGT < 1:10229310/137‑1 CCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGT < 1:15879687/137‑1 CCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGT < 1:15538226/137‑1 CCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGT < 1:10884057/137‑1 ATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCT < 1:1851596/137‑1 ATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCT > 1:18861259/1‑137 ATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCT < 1:19130212/137‑1 ATCCAGAGTCGCGGACCCACAATTGGATTCATTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCT > 1:6233174/1‑137 TCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTC < 1:12820320/137‑1 TCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTC < 2:16196420/137‑1 TCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTC < 2:7079560/137‑1 TCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTC < 2:7419047/137‑1 TCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTC < 2:8558806/137‑1 TCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTC < 2:11863956/137‑1 TCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTC < 1:7474270/137‑1 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG < 2:11279079/137‑1 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG > 1:6562213/1‑137 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG < 1:5210279/137‑1 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG > 1:10009613/1‑137 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG < 2:13271711/137‑1 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG < 2:18829998/137‑1 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG < 2:19046249/137‑1 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG < 2:3981066/137‑1 CCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCG > 1:1822098/1‑137 AGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGG > 2:902741/1‑137 AGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGG > 2:222424/1‑137 tTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTTGGACACATTTTCTGATTCGTGGCTCGGGCAG < 2:9647033/136‑1 CGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAG > 2:4330106/1‑137 CGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAG > 2:18019898/1‑137 CGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAG > 2:17147636/1‑137 CGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAG > 2:16512572/1‑137 CGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAG > 2:12337392/1‑137 GACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGG > 2:8358721/1‑137 GACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGG > 2:5228151/1‑137 GACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGACGATCACTAAGAGATCCCCTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGCGTAGG > 2:19397201/1‑137 ACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGC > 1:3831425/1‑137 ATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGC < 2:4918996/137‑1 ATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGC < 1:17575262/137‑1 CTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGT < 2:17559064/137‑1 TTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTG < 2:6626107/137‑1 TAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGG < 1:16174184/137‑1 CGATGCCCTCTGAGATGACCCTTAGAGCCACCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGAACACATTTTCTGATTCGTGGCTCAGGCAGAGTAGGCCCTGAGCGGCGACCGTGTGCC > 1:11356925/1‑137 CGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCC > 1:3150942/1‑137 CGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCC > 1:11699030/1‑137 GATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCC > 1:2187259/1‑137 CCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCC > 1:14850231/1‑137 TCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAA > 2:3606259/1‑137 TCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAA > 1:19475061/1‑137 TCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAA > 2:15795540/1‑137 TCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAA > 1:16839751/1‑137 TCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAA < 2:10122397/137‑1 TCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAA > 1:9406344/1‑137 TCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAA < 1:5883745/137‑1 GAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACG < 1:471078/137‑1 GAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACG < 2:2989967/137‑1 GAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACG < 2:11521054/137‑1 GACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCG < 1:14416245/137‑1 CTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGAC > 2:18271750/1‑137 CTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGAC < 1:793369/137‑1 CTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGAC > 2:5696732/1‑137 CTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTT > 1:10480029/1‑56 CTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTT < 2:10480029/56‑1 TTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACA < 2:6218581/137‑1 TTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACA > 1:5049298/1‑137 TTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACA < 2:12675471/137‑1 TTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACA < 2:16823629/137‑1 GAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACAC < 1:261035/137‑1 GACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCG < 1:8563514/137‑1 CATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGG < 2:2583785/137‑1 ATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGA < 1:5547138/137‑1 CTTAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACAC > 1:12561474/1‑137 TAGAAATGATTACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACAT < 1:14209953/137‑1 TAGAAATGATTACTTAATGAGGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACAT < 1:2782177/137‑1 TACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTT > 2:10775292/1‑137 ACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTG > 1:12103637/1‑137 ACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTG > 2:13713703/1‑137 ACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTG > 2:15238184/1‑137 ACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTG > 2:5426908/1‑137 ACTTAATGATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAAAGGGGCGGGACACACCGGGACACATGGGGACACTTG > 2:8785407/1‑137 ATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGA < 1:13344295/137‑1 ATGATTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGA < 2:14339603/137‑1 GATTACTAAGAGATCCCTTTTTGGGACACATTTTTTGATTCGTGGCTCGGGCGGGGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACGTGGGACACGAAT < 1:15145029/137‑1 TTACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTT < 1:9674167/137‑1 ACTAAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCAAAAACGGGGCGGGACACACCGGGACACGTGGGGACACTTGGGACACGAATTTAG > 2:5900707/1‑137 AAGAGATCCCTTTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGT < 2:18552719/137‑1 TTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTG < 2:14816080/137‑1 TTTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTG < 1:8204225/137‑1 TTTTGGGACACATTTTCCGATTCTTTGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGACCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTG < 2:7848313/137‑1 |||||| CGGGGCCGCGCCAGGGCGCTGTGGGAGACCACATCCAGAGTCGCGGACCCACAATTGGATTCCTTAGCGATGCCCTCTGAGATGACCCTTAGAGACATCCTTAGAAATGATTACTTAATGATGATTACTAAGAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451_phaM1/2586493‑2586628‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGT > AE015451_phaM1/2625823‑2625958 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |