mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_012967 | 2,273,150 | 0 | T | G | 42.9% | 52.8 / 18.3 | 42 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_012967 | 1,996,255 | 0 | T | G | 33.3% | 77.6 / 10.6 | 45 | Y479S (TAC→TCC) | yeeO | toxic metabolite efflux MATE transporter YeeO |
| * | NC_012967 | 154,497 | 0 | T | G | 26.7% | 126.0 / 14.9 | 60 | A191A (GCA→GCC) | yadL | fimbrial‑like protein YadL |
| * | NC_012967 | 349,626 | 0 | C | T | 26.7% | 140.8 / 50.1 | 75 | P167S (CCG→TCG) | yaiL | DUF2058 domain‑containing protein |
| * | NC_012967 | 1,016,282 | 0 | A | T | 26.5% | 123.6 / 58.0 | 68 | *234Y (TAA→TAT) | elfD | molecular chaperone |
| * | NC_012967 | 3,174,256 | 0 | T | G | 25.0% | 84.9 / 10.6 | 36 | T175P (ACC→CCC) | ygjV | YgjV family protein |
| * | NC_012967 | 2,713,233 | 0 | G | C | 20.0% | 109.9 / 13.0 | 40 | intergenic (‑100/+99) | ECB_RS13445/ECB_RS13450 | tRNA‑Arg/tRNA‑Arg |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | 1869799 = | 80 (1.240) | 8 (0.140) | 8/160 | 3.9 | 9.8% | coding (47/696 nt) | tsaB | tRNA (adenosine(37)‑N6)‑threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB |
| ? | NC_012967 | 1869822 = | 75 (1.290) | coding (24/696 nt) | tsaB | tRNA (adenosine(37)‑N6)‑threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | |||||