mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_012967 | 3,202,996 | 0 | A | C | 52.2% | 25.1 / 34.3 | 23 | intergenic (+359/+149) | yhaC/rnpB | YhaC family protein/RNase P RNA component class A |
| * | NC_012967 | 402,056 | 0 | T | G | 41.5% | 78.3 / 11.9 | 54 | G60G (GGT→GGG) | ribD | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase RibD |
| * | NC_012967 | 2,712,818 | 0 | G | C | 33.3% | 55.3 / 12.9 | 27 | intergenic (‑99/+100) | ECB_RS13435/ECB_RS13440 | tRNA‑Arg/tRNA‑Arg |
| * | NC_012967 | 1,016,282 | 0 | A | T | 30.0% | 87.0 / 52.7 | 60 | *234Y (TAA→TAT) | elfD | molecular chaperone |
| * | NC_012967 | 4,141,009 | 0 | G | A | 27.0% | 65.4 / 12.9 | 37 | E10K (GAA→AAA) | fabR | HTH‑type transcriptional repressor FabR |
| * | NC_012967 | 1,509,936 | 0 | A | G | 26.3% | 73.8 / 13.4 | 38 | pseudogene (74/894 nt) | yddE | PhzF family isomerase |
| * | NC_012967 | 469,605 | 0 | G | T | 23.4% | 92.7 / 16.6 | 47 | G122C (GGC→TGC) | adk | adenylate kinase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 603805 | 89 (1.620) | 5 (0.100) | 5/142 | 3.3 | 5.2% | coding (92/993 nt) | fepG | iron‑enterobactin ABC transporter permease |
| ? | NC_012967 | 604051 = | 103 (2.140) | coding (847/1005 nt) | fepD | Fe(3+)‑siderophore ABC transporter permease | |||||