mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_012967 | 1,019,082 | 0 | T | G | 37.5% | 30.3 / 10.8 | 24 | V62G (GTA→GGA) | elfG | fimbrial protein |
| * | NC_012967 | 2,713,233 | 0 | G | C | 37.1% | 60.3 / 26.1 | 35 | intergenic (‑100/+99) | ECB_RS13445/ECB_RS13450 | tRNA‑Arg/tRNA‑Arg |
| * | NC_012967 | 628,798 | 0 | T | G | 31.6% | 27.7 / 10.1 | 19 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| * | NC_012967 | 4,125,953 | 0 | A | G | 27.5% | 76.3 / 29.1 | 51 | T618A (ACC→GCC) | pflD | formate C‑acetyltransferase |
| * | NC_012967 | 2,689,540 | 0 | C | T | 25.6% | 85.4 / 27.0 | 43 | P179S (CCG→TCG) | gabP | GABA permease |
| * | NC_012967 | 1,379,385 | 0 | A | T | 23.6% | 134.2 / 36.4 | 56 | K66I (AAA→ATA) | ECB_RS06885 | ABC transporter ATP‑binding protein |
| * | NC_012967 | 349,626 | 0 | C | T | 23.6% | 185.8 / 53.7 | 90 | P167S (CCG→TCG) | yaiL | DUF2058 domain‑containing protein |
| * | NC_012967 | 325,108 | 0 | C | T | 22.5% | 92.2 / 15.4 | 40 | T415I (ACA→ATA) | prpD | 2‑methylcitrate dehydratase |
| * | NC_012967 | 4,224,255 | 0 | C | G | 22.4% | 166.7 / 38.3 | 67 | W366S (TGG→TCG) | malE | maltose/maltodextrin ABC transporter substrate‑binding protein MalE |
| * | NC_012967 | 3,879,509 | 0 | G | A | 22.3% | 228.2 / 45.5 | 95 | P239S (CCG→TCG) | atpA | F0F1 ATP synthase subunit alpha |
| * | NC_012967 | 1,016,282 | 0 | A | T | 22.2% | 123.2 / 35.1 | 54 | *234Y (TAA→TAT) | elfD | molecular chaperone |
| * | NC_012967 | 1,844,136 | 0 | C | G | 21.7% | 120.4 / 23.5 | 47 | intergenic (‑435/‑61) | mipA/yeaG | scaffolding protein MipA/protein kinase YeaG |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 4142376 | 54 (1.000) | 9 (0.180) | 8/150 | 2.6 | 14.1% | coding (756/1101 nt) | trmA | tRNA (uridine(54)‑C5)‑methyltransferase TrmA |
| ? | NC_012967 | = 4142387 | 60 (1.200) | coding (745/1101 nt) | trmA | tRNA (uridine(54)‑C5)‑methyltransferase TrmA | |||||
| * | ? | NC_012967 | 1869799 = | 78 (1.440) | 10 (0.210) | 6/144 | 2.9 | 13.4% | coding (47/696 nt) | tsaB | tRNA (adenosine(37)‑N6)‑threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB |
| ? | NC_012967 | 1869822 = | 60 (1.250) | coding (24/696 nt) | tsaB | tRNA (adenosine(37)‑N6)‑threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | |||||