mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_012967 | 2,713,233 | 0 | G | C | 33.3% | 40.8 / 15.2 | 27 | intergenic (‑100/+99) | ECB_RS13445/ECB_RS13450 | tRNA‑Arg/tRNA‑Arg |
| * | NC_012967 | 1,016,282 | 0 | A | T | 27.1% | 113.3 / 45.9 | 59 | *234Y (TAA→TAT) | elfD | molecular chaperone |
| * | NC_012967 | 3,719,252 | 0 | C | T | 20.8% | 114.6 / 21.3 | 48 | A348A (GCC→GCT) | lldP | L‑lactate permease |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012967 | = 4142376 | 59 (1.520) | 3 (0.080) | 3/132 | 3.8 | 5.3% | coding (756/1101 nt) | trmA | tRNA (uridine(54)‑C5)‑methyltransferase TrmA |
| ? | NC_012967 | = 4142387 | 54 (1.520) | coding (745/1101 nt) | trmA | tRNA (uridine(54)‑C5)‑methyltransferase TrmA | |||||