BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_012967	2,705,602	G→A	intergenic (+64/‑27)	ygaH → / → emrR	L‑valine transporter subunit YgaH/multidrug efflux transporter EmrAB transcriptional repressor EmrR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_012967	2,705,602	0	G	A	100.0%	1198.8 / NA	325	intergenic (+64/‑27)	ygaH/emrR	L‑valine transporter subunit YgaH/multidrug efflux transporter EmrAB transcriptional repressor EmrR
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (170/155); total (170/155)

Only 100 of 328 total aligned reads displayed.

TCGCCTGGAAAGTGATGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATT  >  NC_012967/2705510‑2705692

 cGCCTGGAAAGTGATGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGc                                                                                          <  1:13907948/94‑1 (MQ=255)

    cTGGAAAGTGATGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGa                                                                                       >  1:14896169/1‑94 (MQ=255)

      ggAAAGTGATGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGaaa                                                                                     <  1:10476332/94‑1 (MQ=255)

      ggAAAGTGATGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGaaa                                                                                     <  1:7134667/94‑1 (MQ=255)

        aaaGTGATGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAAtt                                                                                   <  1:18479712/94‑1 (MQ=255)

          aGTGATGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTaa                                                                                 <  1:6503152/94‑1 (MQ=255)

          aGTGATGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTaa                                                                                 >  1:19313776/1‑94 (MQ=255)

           gTGATGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAAt                                                                                >  1:7649011/1‑94 (MQ=255)

           gTGATGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAAt                                                                                <  1:19931086/94‑1 (MQ=255)

            tGATGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATg                                                                               <  1:14096313/94‑1 (MQ=255)

              aTGGCTATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAg                                                                             <  1:18419752/94‑1 (MQ=255)

               tGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAgt                                                                            <  1:17716523/94‑2 (MQ=255)

               tGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATAAgg                                                                            <  1:22879131/94‑1 (MQ=255)

                ggCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGt                                                                           <  1:11298107/94‑1 (MQ=255)

                 gCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTc                                                                          <  1:7846549/94‑1 (MQ=255)

                     ttATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATAc                                                                      <  1:1621701/94‑1 (MQ=255)

                     ttATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATAc                                                                      >  1:22382255/1‑94 (MQ=255)

                     ttATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATAc                                                                      >  1:12705010/1‑94 (MQ=255)

                     ttATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATAc                                                                      >  1:9805721/1‑94 (MQ=255)

                      tatataACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATAcc                                                                     >  1:10959007/1‑94 (MQ=255)

                        tataACCCACAAGAATCATTTTTCTAAAAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATAcc                                                                     >  1:2215188/1‑94 (MQ=255)

                        tataACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCa                                                                   >  1:8573451/1‑94 (MQ=255)

                         ataACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCaa                                                                  >  1:4617918/1‑94 (MQ=255)

                          taACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCaaa                                                                 <  1:5228426/94‑1 (MQ=255)

                              ccACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGa                                                             <  1:23023389/94‑1 (MQ=255)

                              ccACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGa                                                             <  1:16029242/94‑1 (MQ=255)

                               cacaAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGAt                                                            <  1:19174187/94‑1 (MQ=255)

                               cacaAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGAt                                                            <  1:14842847/94‑1 (MQ=255)

                               cacaAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGAt                                                            <  1:16615071/94‑1 (MQ=255)

                                acaAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATa                                                           <  1:3179544/94‑1 (MQ=255)

                                acaAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATa                                                           >  1:101713/1‑94 (MQ=255)

                                 caAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAg                                                          >  1:21666397/1‑94 (MQ=255)

                                 caAGAATCATTTGTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAg                                                          <  1:8445116/94‑1 (MQ=255)

                                  aaGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGt                                                         <  1:19381925/94‑1 (MQ=255)

                                    gAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTc                                                       >  1:19502852/1‑94 (MQ=255)

                                     aaTCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCg                                                      >  1:1763243/1‑94 (MQ=255)

                                     aaTCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCg                                                      <  1:7516359/94‑1 (MQ=255)

                                      aTCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGt                                                     >  1:8971202/1‑94 (MQ=255)

                                      aTCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGt                                                     <  1:19753840/94‑1 (MQ=255)

                                         aTTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTa                                                  <  1:1741427/94‑1 (MQ=255)

                                         aTTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTa                                                  >  1:4300714/1‑94 (MQ=255)

                                         aTTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTa                                                  <  1:2189313/94‑1 (MQ=255)

                                         aTTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTa                                                  <  1:19686408/94‑1 (MQ=255)

                                          tttttCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTAc                                                 >  1:10001626/1‑94 (MQ=255)

                                          tttttCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTAc                                                 <  1:10758881/94‑1 (MQ=255)

                                          tttttCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTAc                                                 >  1:2538184/1‑94 (MQ=255)

                                           ttttCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACg                                                >  1:23386243/1‑94 (MQ=255)

                                             ttCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGcc                                              >  1:4781987/1‑94 (MQ=255)

                                               cT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCa                                            <  1:2322507/94‑1 (MQ=255)

                                                t‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAt                                           >  1:1507668/1‑94 (MQ=255)

                                                t‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAt                                           >  1:4168477/1‑94 (MQ=255)

                                                   aaaaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAtt                                          <  1:14333042/94‑1 (MQ=255)

                                                   aaaaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAtt                                          >  1:12387156/1‑94 (MQ=255)

                                                     aaCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGa                                        >  1:21520031/1‑94 (MQ=255)

                                                      aCAATACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGaa                                       <  1:8249257/94‑1 (MQ=255)

                                                        aaTACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa                                     <  1:20837875/94‑1 (MQ=255)

                                                        aaTACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACa                                     >  1:12484896/1‑94 (MQ=255)

                                                          tACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACaaa                                   <  1:13305188/94‑1 (MQ=255)

                                                          tACATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACaaa                                   <  1:3976648/94‑1 (MQ=255)

                                                            cATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATg                                 <  1:18342124/94‑1 (MQ=255)

                                                            cATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATg                                 >  1:5432164/1‑94 (MQ=255)

                                                            cATTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATg                                 >  1:11200816/1‑94 (MQ=255)

                                                             aTTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGc                                >  1:24531375/1‑94 (MQ=255)

                                                             aTTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGc                                >  1:9318200/1‑94 (MQ=255)

                                                             aTTTACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGc                                <  1:21082930/94‑1 (MQ=255)

                                                              tttACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCt                               >  1:11946655/1‑94 (MQ=255)

                                                               ttACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTa                              >  1:15186462/1‑94 (MQ=255)

                                                               ttACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTa                              >  1:6124162/1‑94 (MQ=255)

                                                                tACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGACCAAATGCTaa                             >  1:13797871/1‑94 (MQ=255)

                                                                tACTTTATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTaa                             <  1:876200/94‑1 (MQ=255)

                                                                   tttATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAt                          <  1:1540404/94‑1 (MQ=255)

                                                                   tttATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAt                          >  1:1034904/1‑94 (MQ=255)

                                                                   tttATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAt                          <  1:115774/94‑1 (MQ=255)

                                                                   tttATTTGGCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAt                          >  1:2847137/1‑94 (MQ=255)

                                                                     tATTTGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAttt                        >  1:20410188/1‑94 (MQ=255)

                                                                       tttGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTcg                      >  1:9547606/1‑94 (MQ=255)

                                                                         tGTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTcgcg                    >  1:13459597/1‑94 (MQ=255)

                                                                          gTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCgcgc                   >  1:22724606/1‑94 (MQ=255)

                                                                          gTCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCgcgc                   >  1:13349884/1‑94 (MQ=255)

                                                                           tCACTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGcc                  >  1:17524994/1‑94 (MQ=255)

                                                                             aCTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAg                >  1:2386005/1‑94 (MQ=255)

                                                                             aCTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAg                >  1:8009381/1‑94 (MQ=255)

                                                                              cTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTTGCGCCAgc               >  1:15754926/1‑94 (MQ=255)

                                                                              cTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAgc               >  1:12264075/1‑94 (MQ=255)

                                                                              cTGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAgc               >  1:24080270/1‑94 (MQ=255)

                                                                               tGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAgcc              <  1:18168944/94‑1 (MQ=255)

                                                                               tGTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTATACGCCCATTGAACAAATGCTAAAATTTCGCGCCAgcc              >  1:14565983/1‑94 (MQ=255)

                                                                                gTCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAgccc             >  1:6325775/1‑93 (MQ=255)

                                                                                 tCGTTACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAgccgc            >  1:2208003/1‑94 (MQ=255)

                                                                                    ttACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCAc         >  1:4500005/1‑94 (MQ=255)

                                                                                    ttACTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCAc         >  1:23325013/1‑94 (MQ=255)

                                                                                       cTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGaa      >  1:20225820/1‑94 (MQ=255)

                                                                                       cTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGaa      <  1:7354407/94‑1 (MQ=255)

                                                                                       cTATATCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGaa      <  1:20359506/94‑1 (MQ=255)

                                                                                        tataTCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAg     >  1:6005414/1‑94 (MQ=255)

                                                                                        tataTCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAg     >  1:13016329/1‑94 (MQ=255)

                                                                                         atatCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGa    >  1:486486/1‑94 (MQ=255)

                                                                                          tatCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGAt   <  1:22515104/94‑1 (MQ=255)

                                                                                          tatCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGAt   >  1:2749936/1‑94 (MQ=255)

                                                                                          tatCAGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGAt   <  1:6627775/94‑1 (MQ=255)

TCGCCTGGAAAGTGATGGCGATTATATAACCCACAAGAATCATTTTTCT‑‑AAAACAATACATTTACTTTATTTGTCACTGTCGTTACTATATCGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTTCGCGCCAGCCGCCACGAAGATT  >  NC_012967/2705510‑2705692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`