New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5201567	9 (0.400)	15 (0.680)	15/310	0.5	59.0%	intergenic (‑53/‑127)	PP_4582/PP_4583	conserved membrane protein of unknown function/putative Peptidase
	?	AE015451	5201666 =	12 (0.550)					intergenic (‑152/‑28)	PP_4582/PP_4583	conserved membrane protein of unknown function/putative Peptidase

GGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAG  >  AE015451/5201454‑5201865                                                                                                                                                                                                                     |                                                                                                                                                                                                        gacgatggtcggggtcagcagcagcaccgccagcaccacgcgtagcggttcgcgcagccagcgccacatccagccggtgagcttgaagcccaccagcaggcaccctaaggcggctactgcgtacaagccccaggcgaaggtgtagtcgttctcggtcatggtgttcgtgcaagccaggcaaagagatgcctatgataaacacttttccgggcACAGGCAACTCCAATCaa                                                                                                                                                                                        <  1:271534‑M2/18‑1 (MQ=255)                                                                                                        cctaacgcggctactgcgtacatgccccaggcgaaggtgtagtcgttctcggtcatggtgttcgtgcaagccaggcaaagagatgcctatgatagacacttttccgggcACAGGCAACTCCAATCAAGAGACCTTCAATGcca                                                                                                                                                                        <  2:250314‑M2/34‑1 (MQ=255)                                                                                                                     ctgcgtacaagccccaggcgaaggtgtagtcgttctcggtcatggtgttcgtgcaagccaggcaaagagatgcctatgataaacacttttccgggcACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGAc                                                                                                                           >  2:403268‑M2/97‑175 (MQ=255)                                                                                                                           acaagccccaggcgaaggtgtagtcgttctcggtcatggtgttcgtgcaagccaggcaaagagatgcctatgataaacacttttccgggcACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTa                                                       <  1:403270‑M2/147‑1 (MQ=255)                                                                                                                              agccccaggcgaaggtgtagtcgttctcggtcatggtgttcgtgcaagccaggcaaagagatgcctatgataaacacttttccgggcACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGa                                                                >  2:185235‑M2/88‑225 (MQ=255)                                                                                                                                gCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCATACCTCGGTTCGATCCCTGTTGGAGCGTGTTTACCCGCGCAGCGTCCGGCACAGGCAACTCCAATCGAGAGCCCTTCCATGCGAACCAAGCCCCAAccccc                                                                                                                                                       >  2:346333/1‑136 (MQ=37)                                                                                                                                   caggcgaaggtgtagtcgttctcggtcatggtgttcgtgcaagccaggcaaagagatgcctatgataaacacttttccgggcACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGaa                                                >  1:243091‑M2/83‑236 (MQ=255)                                                                                                                                        cGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCTCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAg                                                                                       >  1:141540/1‑192 (MQ=255)                                                                                                                                                        tcgctcattgtgttcgtgcaagccaggcaaagagatgcctatgatcaacacctttccgggcACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGcc                                                                                                                                 <  2:436420‑M2/73‑1 (MQ=255)                                                                                                                                                         cggtcatggtgttcgtgcaatccaggcaaagagatgcctatgataaacacttttccgggcACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTTTGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCt                                                                  <  1:174494‑M2/136‑1 (MQ=255)                                                                                                                                                                         gcaagccaggcaaagagatgcctatgataaacacttttccgggcACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCAcc                                                                                                                              >  1:203182‑M2/45‑120 (MQ=255)                                                                                                                                                                         gcaagccaggcaaagagatgcctatgataaacacttttccgggcACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCAcc                                                                                                                              <  2:203181‑M2/76‑1 (MQ=255)                                                                                                                                                                             cGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCa                                                                                                                                                                                         <  1:117323/57‑1 (MQ=255)                                                                                                                                                                             cGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCa                                                                                                                                                                                         >  2:117322/1‑57 (MQ=255)                                                                                                                                                                             cGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACCCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAgcctg                                           >  1:114671/1‑199 (MQ=255)                                                                                                                                                                                  ccTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGac                                                                                                >  2:272238/1‑141 (MQ=255)                                                                                                                                                                                  ccTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACAAgg                             >  1:81447/1‑208 (MQ=255)                                                                                                                                                                                            cGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCgaag  >  1:352965/1‑225 (MQ=255)                                                                                                                                                                                             gggTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTa                                                                                                                      >  2:134846/1‑108 (MQ=255)                                                                                                                                                                                             gggTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTa                                                                                                                      <  1:134847/108‑1 (MQ=255)                                                                                                                                                                                              ctatgataaacacttttccgggcACAGGCa                                                                                                                                                                                                   <  2:140961‑M2/7‑1 (MQ=255)                                                                                                                                                                                               tatgataaacacttttccgggcACAGGCAACTCCAATCAAGAGACCTTCAATGCAAACCAAGCCCCAAACCCCGATTGCCAAAACCGAcc                                                                                                                                      >  2:406082‑M2/23‑90 (MQ=255)                                                                                                                                                                                                atgataagcgctttgccgggcGCAGGCAACTCCAATCAAGAGCCCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAgcg                                                                                                    <  2:56363‑M2/102‑1 (MQ=255)                                                                                                                                                                                                 ttACCCGCGAAGAGGCCGGCACAGGCACCTCCAACCAAGAGACCTTCAATGCCACCCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGAcaa                               <  2:81446/191‑3 (MQ=255)                                                                                                                                                                                                 ttACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGCACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGcc           >  1:54461/1‑211 (MQ=255)                                                                                                                                                                                                              tccgggcACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAGCCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACg                                                           <  1:42377‑M2/143‑1 (MQ=255)                                                                                                                                                                                                               ccgggcACAGGCAACTCCAACCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCCCCGACCCGTATGCCTGGCTGCAACAGCGCGACGCCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCAcc                         <  1:137748‑M2/177‑1 (MQ=255)                                                                                                                                                                                                                     |                                                                                                                                                                                                        GGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCCTGCCTGGCCGACCAGGCACCGTTGCGTGAGCGCCTGTTCGAAG  >  AE015451/5201454‑5201865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.