Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	3872787	3872826	40	5 [1]	[3] 5	PP_3421	Sensor histidine kinase

CCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCC  >  AE015451/3872728‑3872794                                                           |         ccTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTcaccag          >  1:187363/1‑59 (MQ=255) ccTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTcaccag          <  2:187362/59‑1 (MQ=255)                        cGTACCGCCGAAACGTTCCATGATGCGTTTcaccag          <  1:117616/36‑1 (MQ=255)                        cGTACCGCCGAAACGTTCCATGATGCGTTTcaccag          >  2:117615/1‑36 (MQ=255)                        cGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGcc  >  1:318464/1‑44 (MQ=255)                                                           |         CCTTCACTGCTGCTGAGCCGGACCGTACCGCCGAAACGTTCCATGATGCGTTTCACCAGCACCAGCC  >  AE015451/3872728‑3872794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑