| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 338180 = | 47 (0.940) | 3 (0.060) | 3/330 | NT | 5.8% | coding (389/690 nt) | PP_0280 | Amino acid ABC transporter, permease protein |
| ? | AE015451 | 338227 = | 51 (1.040) | coding (342/690 nt) | PP_0280 | Amino acid ABC transporter, permease protein | |||||
CGCAGTTCGATGCGGTGCGCTCCAGTTCGCTGTGGCCGTACCTGCGCGATCCGTTCTGGTGCACGGTGCTGACCATGACCCTGCACACCGCTGCGTACATCGCCGAGATTCTGCGTGGCGCGCTGCAGGCGATCCCTAAAGGTGAGATTGAAGCGGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/338339‑338180‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgCAGAATCTCGGCGATGTACGCAGCGGTGTGCAGGGTCATGGTCAGCACCGTGCACCAGAACGGATCGCGCAGGTACGGCCACAGCGAACTGGAGCGCACCGCATCGAACTGCGCCAGGCCGTAATAGACCAGGAACAATTGCACCAGCAGCGGCGTGCCACGGAAGAAGAAAATGTAGCTGAACGGCACCGCGCGCACGTACCAGTGG > AE015451/338227‑338434 CGCAGTTCGATGCGGTGCGCTCCAGTTCGCTGTGGCCGTACCTGCGCGATCCGTTCTGGTGCACGGTGCTGACCATGACCCTGCACACCGCTGCGTACATCGCCGAGATTCTGCGTGGCGCGCTGCAGGCGATCCCTAAAGGTGAGATTGAAGCGGCACGCAGAATCTCGGCGATGTACGCAGCGGTGTGCAGGGTCATGGTCAGCACCGT > 1:420959/1‑211CGCAGTTCGATGCGGTGCGCTCCAGTTCGCTGTGGCCGTACCTGCGCGATCCGTTCTGGTGCACGGTGCTGACCATGACCCTGCACACCGCTGCGTACATCGCCGAGATTCTGCGTGGCGCGCTGCAGGCGATCCCTAAAGGTGAGATTGAAGCGGCACGCAGAATCTCGGCGATGTACGCAGCGGTGTGCAGGGTCATGGTCAGCACCGT < 2:420956/211‑1 TGGCGCGCTCCAGGCGATCCCTAAAGGTGAGATTGAAGCGGCACGCAGAATCTCGGCGATGTACGCAGCGGTGTGCAGGGTCATGGTCA < 2:427934/89‑1 CACGCAGAATCTCGGCGATGTACGCAGCGGTGTGCAGGGTCATGGTCAGCACCGTGCACCAGAACGGATCGCGCAGGTACGGCCACAGCGAACTGGAGCGCACCGCATCGAACTGCGCCAGGCCGTAATAGACCAGGAACAATTGCACCAGCAGCGGCGTGCCACGGAAGAAGAAAATGTAGCTGAACGGCACCGCGCGCACGTACCAGTGG > 2:263517/1‑212 CACGCAGAATCTCGGCGATGTACGCAGCGGTGTGCAGGGTCATGGTCAGCACCGTGCACCAGAACGGATCGCGCAGGTACGGCCACAGCGAACTGGAGCGCACCGCATCGAACTGCGCCAGGCCGTAATAGACCAGGAACAATTGCACCAGCAGCGGCGTGCCACGGAAGAAG > 2:749226/1‑173 CGCAGTTCGATGCGGTGCGCTCCAGTTCGCTGTGGCCGTACCTGCGCGATCCGTTCTGGTGCACGGTGCTGACCATGACCCTGCACACCGCTGCGTACATCGCCGAGATTCTGCGTGGCGCGCTGCAGGCGATCCCTAAAGGTGAGATTGAAGCGGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/338339‑338180‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgCAGAATCTCGGCGATGTACGCAGCGGTGTGCAGGGTCATGGTCAGCACCGTGCACCAGAACGGATCGCGCAGGTACGGCCACAGCGAACTGGAGCGCACCGCATCGAACTGCGCCAGGCCGTAATAGACCAGGAACAATTGCACCAGCAGCGGCGTGCCACGGAAGAAGAAAATGTAGCTGAACGGCACCGCGCGCACGTACCAGTGG > AE015451/338227‑338434 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |