New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 707054	43 (0.860)	4 (0.090)	4/286	NT	10.1%	intergenic (+230/+16)	PP_0599/rpsT	paraquat‑inducible protein B/30S ribosomal protein S20
	?	AE015451	= 707028	35 (0.830)					intergenic (+204/+42)	PP_0599/rpsT	paraquat‑inducible protein B/30S ribosomal protein S20

GCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/706869‑707054 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaccgaccctagggtcggtttttTGTTGCCTGCGATTTATGCTTGCGGGCCCAGTTCCATGCGGGACTCGATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGGGGCAGCCCCGGCAATCTCACTTTCT  <  AE015451/707028‑706919                                                                                                                                                                                                                                                                                                          GCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTATGGTCGG                                                                                                                     >  2:693674/1‑181                                  CCCCACGGTCTCAGCGCAGAAAGAGAGATTGCCGGGGCTGCCCCGCAGCCATATCGCGACACAAGGCAGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAA                                                                                                                                       <  1:18243/130‑1                                    CCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTTGTTGCCTGCGATTTATGCTTGCGGGCCCAGTTCCATGCGGGACTCGATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGCctgt                            >  1:532389/1‑231                                                                                               CAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTTGTTGCCTGCGATTTATGCTTGCGGGCCCAGTTCCATGCGGGACTCGATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGGGGCAGCCCCGGCAAT            >  2:532386/1‑192                                                                                                        gCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTTGTTGCCTGCGATTTATGCTTGCGG                                                                                       <  2:591983/107‑1                                                                                                                                             AGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTTTGTTGCCTGCGATTTATGCTTGCGGGCCCAGCTCCATGCGGGACTCGATCTGTGCGAGCGGCCTTGTGTC                                          >  1:183956/1‑116                                                                                                                                                                 AAAAACCGACCCTAGGGTCGGTTTTTTGTTGCCTGCGATTTATGCTTGCGGGCCCAGTTCCATGCGGGACTCGATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGGGGCAGCCCCGGCAATCTCACTTTCT  <  2:753427/136‑1                                                                                                                                                                          CCCTAGGGTCGGTTTTTTGTTGCCTGCGATTTATGCTTGCGGGCCCAGTTCCATGCGGGACTCGATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGGGGGGCAGC                     >  1:43242/1‑108                                                                                                                                                                                                                                                                                                          GCGGCCTTGCGTCGCGAAAGGGGCGCGTAGCGGCCCCTCGGTCTCAGCGCAGAAAGTGAGATTGCCGGGGCTGCCCCGCAGCCCTATCGCGACACAAGGCCGCTCCCACAGATCGAGTCCCGCATGGAACTGGGCCCGCAAGCATAAATCGCAGGCAACAAAAAACCGACCCTAGGGTCGGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/706869‑707054 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaccgaccctagggtcggtttttTGTTGCCTGCGATTTATGCTTGCGGGCCCAGTTCCATGCGGGACTCGATCTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGGGGCAGCCCCGGCAATCTCACTTTCT  <  AE015451/707028‑706919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.