New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1395221	35 (0.700)	8 (0.180)	8/306	NT	21.7%	coding (958/1047 nt)	ruvB	Holliday junction ATP‑dependent DNA helicase RuvB
	?	AE015451	= 1395205	26 (0.570)					coding (942/1047 nt)	ruvB	Holliday junction ATP‑dependent DNA helicase RuvB

CGCGGCAAGGGCCAGATCACCAAGGCCGTGGCTGACATGGCGCTGAACCTGCTGGATGTCGACGAGCGTGGTTTCGACCATTCCGACCGTCGCCTGCTGCTGACCATGATCGAGAAGTTCGATGGCGGCCCGGTGGGCGTGGACAACCTGGCTGCAGCCATCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1394972‑1395221 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacgcggccgcgtggCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACATCCAGCAGGTTCAGCGCCATGTCAGCCACGGCCTTGGTGA  <  AE015451/1395205‑1394988                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGCGGCAAGGGCCAGATCACCAAGGCCGTGGCTGACATGGCGCTGAACCTGCTGGATGTCGACGAGCGTGGTTTCGACCATTCCGACCGTCGCCTGCTGCTGACCATGATCGAGAAGTTCGATGGCGGCCCGGTGGGCGTGGACAACCTGGCTGCAGCCATCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGC                                                                                                                                                                                                                                           >  1:299954/1‑235                                                            CGACGAGCGTGGTTTCGACCATTCCGACCGTCGCCTGCTGCTGACCATGATCGAGAAGTTCGATGGCGGCCCGGTGGGCGTGGACAACCTGGCTGCAGCCATCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGC                                                                                                                                                                                                                                      >  2:666751/1‑181                                                                                                          ATGATCGAGAAGTTCGATGGCGGCCCGGTGGGCGTGGACAACCTGGCTGCAGCCATCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAG                                                                                                                                                                                              <  2:533250/175‑1                                                                                                                       TCGATGGCGGCCCGGTGGGCGTGGACAACCTGGCTGCAGCCATCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGG                                                                                                                                                                                                                            <  1:387411/132‑1                                                                                                                                               ACAACCTGGCTCCATCCATCAGCGAAGAGCGTCATACCTTCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACAT                                                                                                                                                                             <  1:7417/155‑1                                                                                                                                                               gATCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCG                                                                                                                    <  1:785472/195‑1                                                                                                                                                                    GCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGT                                                                                                                                                                                            >  2:785469/1‑119                                                                                                                                                                               CATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCGTCGg                                                                                                        >  1:318012/1‑191                                                                                                                                                                                                                    AGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCGCTTCGCTGATGGCTGCAGCCAGGTTGTC                                                                                                                               >  2:167045/1‑132                                                                                                                                                                                                                         GGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCAC                                                                                                                            <  1:307986/130‑1                                                                                                                                                                                                                         GGCTACATCATGCGCACGCCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCAC                                                                                                                            >  2:307983/1‑130                                                                                                                                                                                                                                           CCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAG                                                                               <  1:379960/157‑1                                                                                                                                                                                                                                           CCACGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAG                                                                               >  2:379957/1‑157                                                                                                                                                                                                                                              CGCGGCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACATCCAGCAGGTTCAGCGCCATGTCAGCCACGGCCTTGGTGA  <  1:817588/231‑1                                                                                                                                                                                                                                                  GCCGCGTGGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACATCCAGCAGGTTCAGCGCCATGTCAGCCACGGCCTTGGT    >  1:67126/1‑225                                                                                                                                                                                                                                                         GGCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACATCCAGCAGGTTCAGCGCCATGTCAGCCACGGCCTTG      >  2:372920/1‑216                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGCGGCAAGGGCCAGATCACCAAGGCCGTGGCTGACATGGCGCTGAACCTGCTGGATGTCGACGAGCGTGGTTTCGACCATTCCGACCGTCGCCTGCTGCTGACCATGATCGAGAAGTTCGATGGCGGCCCGGTGGGCGTGGACAACCTGGCTGCAGCCATCAGCGAAGAGCGTCATACCATCGAAGATGTGCTTGAGCCGTACCTGATTCAGCAGGGCTACATCATGCGCACGCCACGCGGCCGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1394972‑1395221 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacgcggccgcgtggCGTGCGCATGATGTAGCCCTGCTGAATCAGGTACGGCTCAAGCACATCTTCGATGGTATGACGCTCTTCGCTGATGGCTGCAGCCAGGTTGTCCACGCCCACCGGGCCGCCATCGAACTTCTCGATCATGGTCAGCAGCAGGCGACGGTCGGAATGGTCGAAACCACGCTCGTCGACATCCAGCAGGTTCAGCGCCATGTCAGCCACGGCCTTGGTGA  <  AE015451/1395205‑1394988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.