New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 2414803 = | 29 (0.580) | 11 (0.230) | 9/318 | NT | 29.2% | coding (1/198 nt) | PP_2115 | conserved protein of unknown function |
? | AE015451 | 4022806 = | 26 (0.550) | intergenic (‑501/+167) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
AAATGATCGCTATTGTCGCGCATAGCGCGACGCGGTCCAAGCACGGCTTTCAAACCCAGCGCTCTTGATCTCGATCTTGATCTTGATCTCGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGAAGGCAGGTGACGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2415009‑2414803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacgggcatCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAATCAAAAGCCGAAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCATCGGGATCTTGCCTTGATTTTAGCTCAATGCCCCGCCGATGCCGGGCCCGCCTTAGCGGTAAAGGGCGGCTTGGCGAACCACACCAGCAG > AE015451/4022806‑4023038 AAATGATCGCTATTGTCGCGCATAGCGCGACGCGGTCCAAGCACGGCTTTCAAACCCAGCGCTCTTGATCTCGATCTTGATCTTGATCTCGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGAAGGCAGGTGAC < 1:475805/201‑1 GCTATTGTCGCGCATAGCGCGACGCGGTCCAAGCACGGCTTTCAAACCCAGCGCTCTTGATCTCGATCTTGATCTTGATCTCGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGCACGCAGGCCTTGCGAAGGCAGGTGACGGGCAT > 1:441279/1‑199 AGCGCGACGCGGTCCAAGCACGGCTTTCAAACCCAGCGCTCTTGATCTCGATCTTGATCTTGATCTCGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGAAGGCAGGTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCG > 1:183839/1‑235 TTCAAACCCAGCGCTCTTGATCTCGATCTTGATCTTGATCTCGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGTAGGCCGAACGCAGGCCTTGCGAAGGCAGGTG > 2:50335/1‑151 TTCAAACCCAGCGCTCTTGATCTCGATCTTGATCTTGATCTCGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGAAGGCAGGTGACGGGCATGGATGCCCGTCACCTGCCTTCGCAA < 1:645191/184‑1 TTCAAACCCAGCGCTCTTGATCTCGATCTTGATCTTGATCTCGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGAAGGCAGGTGACGGGCATGGATGCCCGTCACCTGCCTTCGCAA > 2:645188/1‑184 CTTGATCTCGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGAAGGCAGGTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAAca > 1:197625/1‑216 CTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCGTCCATGCCCGTCACCTCCCTCCGCACGCCCTGCGCGCGACCTCCTGAAGTC > 1:431932/1‑134 ATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATCCAGGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAA < 2:649037/160‑1 GATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAA < 2:383571/155‑1 TTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAATCAAAAGCCGAAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCATCGGGATCTTGCCTTGATTTTAGCTCAATGCCCCGCCG < 2:749465/234‑1 GACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAATCAAAAGCCGAAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCATCG > 2:743018/1‑194 GAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAATCAAAAGCCGAAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCATCGGGATCTTGCCTTGATTTTAGCTCAATGCCCCGCCGATGCC < 2:434872/226‑1 gCGCAGGGCTTGCGAAGGGAGGTGACGGGCATCCATGCCCGTCCCCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAATCAAAAG > 2:867478/2‑131 ATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAATCAAAAGCCGAAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCATCGGGATCTTGCCTTGATTTTAGCTCAATGCCCCGCCGATGCCGGGCCCGCCTTAGCGGTAAAGGGCGGCTTGGCGAACCACACCAGCAG < 1:828702/235‑1 AAATGATCGCTATTGTCGCGCATAGCGCGACGCGGTCCAAGCACGGCTTTCAAACCCAGCGCTCTTGATCTCGATCTTGATCTTGATCTCGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGAAGGCAGGTGACGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/2415009‑2414803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacgggcatCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGCGCGCTTAGAAGCAAAATCAAAAGCCGAAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCATCGGGATCTTGCCTTGATTTTAGCTCAATGCCCCGCCGATGCCGGGCCCGCCTTAGCGGTAAAGGGCGGCTTGGCGAACCACACCAGCAG > AE015451/4022806‑4023038 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |