New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2631895 =	39 (0.780)	3 (0.060)	3/324	NT	7.5%	coding (1360/2397 nt)	lon‑II	DNA‑binding, ATP‑dependent protease
	?	AE015451	2631913 =	37 (0.770)					coding (1378/2397 nt)	lon‑II	DNA‑binding, ATP‑dependent protease

GATGTCGCGAATCGCCGAGACGTCGACTTCCAGCTCTTCTTTCTTCAAGCCGTTGGCCTTGACCTGCTTGGGCACCAGGTACTTGACCGCGATGTTGATCTTTTCGTCCTCGGTGTAGCCAGGCAGACGGATGACTTCCATCCGGTCCAGCAGCGCCGGCGGGATGTTCATCGAGTTCGAGGTGCACAGGAACATCACGTCCGAGAGGTCGTAGTCGACCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2632116‑2631895 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacctcTCGGACGTGATGTTCCTGTGCACCTCGAACTCGATGAACATCCCGCCGGCGCTGCTGGACCGGATGGAAGTCATCCGTCTGCCTGGCTACACCGAGGACGAAAAGATCAACATCGCGGTCAAGTACCTGGTGCCCAAGCAGGTCAAGGCCAACGGCTTGAAGAAAGAAGAGCTGGAAGTCGACGTCTCGGCGATTCGCGACATCATCCGCTACTACACCCGTGAAGCCGGT  >  AE015451/2631913‑2632143                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATGTCGCGAATCGCCGAGACGTCGACTTCCAGCTCTTCTTTCTTCAAGCCGTTGGCCTTGACCTGCTTGGGCACCAGGTACTTGACCGCGATGTTGATCTTTTCGTCCTCGGTGTAGCCAGGCAGACGGATGACTTCCATCCGGTCCAGCAGCGCCGGCGGGATGTTCATCGAGTTCGAGGTGCACAGGAACTTCACGTCCGAGATGTCGTAGTAGACCTg                                                                                                                                                                                                                                         >  2:318940/1‑221                       TCGACTTCCAGCTCTTCTTTCTTCAAGCCGTTGGCCTTGACCTGCTTGGGCACCAGGTACTTGACCGCGATGTTGATCTTTTCGTCCTCGGTGTAGCCAGGCAGACGGATGACTTCCATCCGGTCCAGCAGCGCCGGCGGGATGTTCATCGAGTTCGAGGTGCACAGGAACATCACGTCCGAGAGGTCGTAGTC                                                                                                                                                                                                                                               >  2:587365/1‑194                                                                                                                                           CATCCGGTCCAGCAGCGCCGGCGGGATGTTCATCGAGTTCGAGGTGCACAGGAACATCACGTCCGAGAGGTCGTAGTCGACCTCTCGGACGTGATGTTCCTGTGCACC                                                                                                                                                                                                                 <  2:282276/108‑1                                                                                                                                                                                    AGGTGCACAGGAACATCACGTCCGAGAGGTCGTAGTCGACCTCTCGGACGTGATGTTCCTGTGCACCTCGAACTCGATGAACATCCCGCCGGCGCTGCTGGACCGGATGGAAGTCATCCGTCTGCCTGGCTACACCGAGGACGAAAAGATCAACAT                                                                                                                        <  1:786370/156‑1                                                                                                                                                                                    AGGTGCACAGGAACATCACGTCCGAGAGGTCGTAGTCGACCTCTCGGACGTGATGTTCCTGTGCACCTCGAACTCGATGAACATCCCGCCGGCGCTGCTGGACCGGATGGAAGTCATCCGTCTGCCTGGCTACACCGAGGACGAAAAGATCAACAT                                                                                                                        >  2:786367/1‑156                                                                                                                                                                                                                           CCTCTCGGACGTGATGTTCCTGTGCACCTCGAACTCGATGAACATCCCGCCGGCGCTGCTGGACCGGATGGAAGTCATCCGTCTGCCTGGCTACACCGAGGACGAAAAGATCAACATCGCGGTCAAGTACCTGGTGCCCAAGCAGGTCAAGGCCAACGGCTTGAAGAAAGAAGAGCTGGAAGTCGACGTCTCGGCGATTCGCGACATCATCCGCTACTACACCCGTGAAGCCGGT  >  1:161932/1‑235                                                                                                                                                                                                                             TCTCGGACGTGATGTTCCTGTGCACCTCGAACTCGATGAACATCCCGCCGGCGCTGCTGGACCGGATGGAAGTCATCCGTCTGCCTGGCTACACCGAGGACGAAAAGATCAACATCGCGGTCAAGTACCTGGTGCCCAAGCAGGTCAAGGCCAACGGCTTGAAGAAAGAAGAGCTGGAAGTCGACGTCTCGGCGATTCGCGACATCATCCGCTACT                   <  2:793854/216‑1                                                                                                                                                                                                                             TCTCGGACGTGATGTTCCTGTGCACCTCGAACTCGATGAACATCCCGCCGGCGCTGCTGGACCGGATGGAAGTCATCCGTCTGCCTGGCTACACCGAGGACGAAAAGATCAACATCGCGGTCAAGTACCTGGTGCCCAAGCAGGTCAAGGCCAACGGCTTGAAGAAAGAAGAGCTGGAAGTCGACGTCTCGGCGATTCGCGACATC                             <  2:584435/206‑1                                                                                                                                                                                                                              CTCGGACGTGATGTTCCTGTGCACCTCGAACTCGATGAACATCCCGCCGGCGCTGCTGGACCGGATGGAAGTCATCCGTCTGCCTGGCTACACCGAGGACGAAAAGATCAACATCGCGGTCAAGTACCTGGTGCCCAAGCAGGTCAAGGCCAACGGCTTGAAGAAAGAAGAGCTGGAAGTCGACGTCTCGGCGATTCGCGACATCATCCGCTACTACACCCGTGAA        >  1:760188/1‑226                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATGTCGCGAATCGCCGAGACGTCGACTTCCAGCTCTTCTTTCTTCAAGCCGTTGGCCTTGACCTGCTTGGGCACCAGGTACTTGACCGCGATGTTGATCTTTTCGTCCTCGGTGTAGCCAGGCAGACGGATGACTTCCATCCGGTCCAGCAGCGCCGGCGGGATGTTCATCGAGTTCGAGGTGCACAGGAACATCACGTCCGAGAGGTCGTAGTCGACCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2632116‑2631895 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacctcTCGGACGTGATGTTCCTGTGCACCTCGAACTCGATGAACATCCCGCCGGCGCTGCTGGACCGGATGGAAGTCATCCGTCTGCCTGGCTACACCGAGGACGAAAAGATCAACATCGCGGTCAAGTACCTGGTGCCCAAGCAGGTCAAGGCCAACGGCTTGAAGAAAGAAGAGCTGGAAGTCGACGTCTCGGCGATTCGCGACATCATCCGCTACTACACCCGTGAAGCCGGT  >  AE015451/2631913‑2632143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.