New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3970610	NA (NA)	4 (0.090)	4/306	NT	NA	coding (529/1536 nt)	PP_3501	transposase
	?	AE015451	= 3970594	NA (NA)					coding (513/1536 nt)	PP_3501	transposase

CCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3970403‑3970610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtaccggcgcCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGCCTGT  <  AE015451/3970594‑3970369                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCAAGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGG                                                                                                                                                                                                                                       <  1:57210/205‑1                  TCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCGGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGG                                                                                                                                                                                                                                       <  2:589917/188‑1                                                  ACACCCAATGCGCCTGTGGCTGCCACCTGCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGC                                                                                                                                                                                                                                    <  2:137255/159‑1                                                                   GGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCCGTGCGAAACACTGATCCAGGCGCCGGTACCGG                                                                                                                                                                                                                                       >  2:487857/1‑139                                                                                                                        GCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCCTGGACCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCAC                                                                                                                                                                                           >  2:776396/1‑130                                                                                                                          CAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGT                                                                                                                    >  2:562301/1‑199                                                                                                                                                              AATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCCGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGGAGTTGGCA                                                                                                         >  1:526266/1‑174                                                                                                                                                                                       ACTGATCCAGGCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATT                   >  1:583821/1‑235                                                                                                                                                                                                 GCGCCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTACGCCGCTGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAA                                       >  1:509656/1‑205                                                                                                                                                                                                    CCGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCc                                        >  1:652175/1‑200                                                                                                                                                                                                     CGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGG                                    >  2:311119/1‑204                                                                                                                                                                                                     CGGTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTT                                                                                   >  2:574166/1‑157                                                                                                                                                                                                       GTACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGCCTGT  >  1:734424/1‑236                                                                                                                                                                                                        TACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCCTCGCCGATGCGTTGCAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGT                                                            >  2:207358/1‑177                                                                                                                                                                                                        TACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGT                                                                                                                                                                        <  1:626937/69‑1                                                                                                                                                                                                        TACCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGT                                                                                                                                                                        >  2:626934/1‑69                                                                                                                                                                                                          CCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGGTTGGGCGATTGCCGTG             >  1:241850/1‑222                                                                                                                                                                                                          CCGGCGCCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGG                                                             >  1:737533/1‑174                                                                                                                                                                                                                                                                                                                                                                                                                                                    CCATTGCCGCCGCAGTTTCCGCGTACCGTGATTCGTCACGAACCCGAAAACACCCAATGCGCCTGTGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTGGATTACACGCCAGGGGTATTCACGGTCGAGCATCATGTGCGTGGCAAATGGGCCTGCCGTCAGTGCGAAACACTGATCCAGGCGCCGGTACCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3970403‑3970610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtaccggcgcCTGGATCAGTGTTTCGCACTGACGGCAGGCCCATTTGCCACGCACATGATGCTCGACCGTGAATACCCCTGGCGTGTAATCCAGCTTCTCGCTGACGTCTTCGCCGATGCGTTGAAGTTGGCAGCCACAGGCGCATTGGGTGTTTTCGGGTTCGTGACGAATCACGGTACGCGGAAACTGCGGCGGCAATGGTGCACGTTTGGGCGATTGCCGTGGCTCGGCCTGT  <  AE015451/3970594‑3970369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.