New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4375251	66 (1.320)	5 (0.110)	5/314	NT	7.3%	coding (49/264 nt)	PP_3850	conserved protein of unknown function
	?	AE015451	= 4375349	65 (1.400)					coding (187/258 nt)	PP_5637	conserved protein of unknown function

GGCTGAGCGCTGAATGAGCAGAGGTAATCCTAGCAATCGATTACCCCCTGCAGCCTAGATAACGATTCTTCCTCTTCATTTTCTATCAGAGCCCACAGCCTGGCCGCCTCGGTAAGCTCGAGCATGTCGACCAGGTCATTGTCGTCGACATCATTGCGCCGACGAGCCGCATAGGCCATCACACTGAGCACCGCAGCGCGCCCATCAGGATCGGTTACTAGGGCAACGTGGTCGCCCAGCTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4375007‑4375251 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagctcggcATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGCGACCACGTTGCCCTAGTAACCGATCCTGATGGGCGCGCTGCGGTGCTCAGTGTGATGGCCTATGCGGCTCGTCGGCGCAATGATGTCGACGACAATGACCTGGTCGACATGCTC  <  AE015451/4375349‑4375126                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGCTGAGCGCTGAATGAGCAGAGGTAATCCTAGCAATCGATTACCCCCTGCAGCCTAGATAACGATTCTTCCTCTTCATTTTCTATCAGAGCCCACAGCCTGGCCGCCTCGGTAAGCTCGAGCATGTCGACCAGGTCATTGTCGTCGACATCATTGCGCCGACGAGCCGCATAGGCCATCACACTGAGCACCGCAGCGCGCCCATCAGGATCGGTTACTAGGGCAACGTGGTCGCC                                                                                                                                                                                                                                           <  1:709103/236‑1                                                                                                              CGGTAAGCTCGAGCATGTCGACCAGGTCATTGTCGTCGACATCATTGCGCCGACCAGCCGCATAGGCCATCACACTGAGCACCGCAGCGCGCCCATCAGGATCGGTTACTAGGGCAACGTGGTCGCCCAGCT                                                                                                                                                                                                                                      <  2:499788/132‑1                                                                                                                                                                CGACGAGCAGCATAGGCCATCACACTGAGCACCGCAGCGCGCCCATCAGGAGGGGGTACTAGGGCAACGAGGGAGCCCAGAGCGGCATCAACATCAACGGGGTAGAAGAGGGCGAAGGCGTGCTATATGCGCAGTCGGGGTG                                                                                                                                                                          >  2:879685/1‑142                                                                                                                                                                               GCCATCACACTGAGCACCGCAGCGCGCCCATCAGGATCGGTTACTAGGGCAACGTGGTCGCCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAAGGATGGCCGGGGTT                                                                                                                                               >  1:154777/1‑154                                                                                                                                                                                       ACTGAGCACCGCAGCGCGCCCATCAGGATCGGTTACTAGGGCAACGTGGTCGCCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGCGACCACGTTGCCCTAGTAACCGATCCTGATGGGCGCGCTGCGGTGCTCAGTG                                                                <  1:299914/225‑1                                                                                                                                                                                       ACTGAGCACCGCAGCGCGCCCATCAGGATCGGTTACTAGGGCAACGTGGTCGCCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCC                                                                                                                                                     >  2:565570/1‑140                                                                                                                                                                                            GCACCGCAGCGCGCCCATCAGGATCGGTTACTAGGGCAACGTGGTCGCCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAG                                                                                                                                         >  1:395834/1‑147                                                                                                                                                                                                                                           CCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGCGACCACGTTGCCCTAGTAACCGATCCTGATGGGCGCGCTGCGGTGCTCAGTGTGATGGCCTATGCGGCTCGTCGGCGCAATGATGTCGACGACAATGACCTGGTC           >  2:780495/1‑226                                                                                                                                                                                                                                           CCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGC                                                                                                                                                                                                 <  2:532761/44‑1                                                                                                                                                                                                                                           CCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGC                                                                                                                                                                                                 >  1:532764/1‑44                                                                                                                                                                                                                                           CCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGG                                                                                                                                                                                                         >  1:934544/1‑36                                                                                                                                                                                                                                           CCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGG                                                                                                                                                                                                         <  2:934541/36‑1                                                                                                                                                                                                                                             CAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGCGACCACGTTGCCCTAGTAACCGATCCTGATGGGCGCGCTGCGGTGCTCAGTGTGATGGCCTATGCGGCTCGTCGGCGCAATGATGTCGACGACAATGACCTGGTCGACATGCTC  <  2:867240/233‑1                                                                                                                                                                                                                                              gggTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGG                                                                                                                                                                         <  2:9838/62‑1                                                                                                                                                                                                                                               GCTCGGCATCAACAGCAAAGGGGTAGCAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGCGACCACGTTGCCCTAGT                                                                                                   <  2:677383/134‑1                                                                                                                                                                                                                                                 TCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGCGACCACGTTGCCCTAGTAACCGATCCTGATGGGCGCGCTGCGGTGCTCAGTGTGATGGCCTATGCGGCTCGTCGGCGCAATGATG                               <  2:760780/200‑1                                                                                                                                                                                                                                                   GGCCTCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGCGACCACGTTGCCCTAGTAACCGATCCTGATGGGCGCGCT                                                                             <  2:309785/152‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGCTGAGCGCTGAATGAGCAGAGGTAATCCTAGCAATCGATTACCCCCTGCAGCCTAGATAACGATTCTTCCTCTTCATTTTCTATCAGAGCCCACAGCCTGGCCGCCTCGGTAAGCTCGAGCATGTCGACCAGGTCATTGTCGTCGACATCATTGCGCCGACGAGCCGCATAGGCCATCACACTGAGCACCGCAGCGCGCCCATCAGGATCGGTTACTAGGGCAACGTGGTCGCCCAGCTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4375007‑4375251 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagctcggcATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGCGACCACGTTGCCCTAGTAACCGATCCTGATGGGCGCGCTGCGGTGCTCAGTGTGATGGCCTATGCGGCTCGTCGGCGCAATGATGTCGACGACAATGACCTGGTCGACATGCTC  <  AE015451/4375349‑4375126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.