New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4432452 =	58 (1.160)	3 (0.060)	3/322	NT	6.0%	coding (473/822 nt)	PP_3927	Methyltransferase type 12
	?	AE015451	4432501 =	39 (0.820)					coding (424/822 nt)	PP_3927	Methyltransferase type 12

TGCGGCCTGGATTATTCCAAGGCTTCGCTGGCCGAAGCACGGGCATTGGCCGAGCGATGTGCGCTGCCCATCCAGTATGTCGAGTCTGACGTCTATGCCGCCGACAAGGTACTGCCGGCGGGTACGTTCGACCTGGTCTACACCGGTATTGGCGCGCTCTGCTGGCTGCCCCGCATCGAGCCATGGGCACGCACCGTCGCGGCACTGCTGAAACCGGGCGGGCGACTGTTCCTGCGCGACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4432693‑4432452 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgacggTGCGTGCCCATGGCTCGATGCGGGGCAGCCAGCAGAGCGCGCCAATACCGGTGTAGACCAGGTCGAACGTACCCGCCGGCAGTACCTTGTCGGCGGCATAGACGTCAGACTCGACATACTGGATGGGCAGCGCACATCGCTCGGCCAATGCCCGTGCTTCGGCCAGCGAAGCCTTGGAATAATC  >  AE015451/4432501‑4432684                                                                                                                                                                                                                                                                                                                                                                                                                                            TGCGGCCTGGATTATTCCAAGGCTTCGCTGGCCGAAGCACGGGCATTGGCCGAGCGATGTGCGCTGCCCATCCAGTATGTCGAGTCTGACGTCTATGCCGCCGACAAGGTACTGCCGGCGGGTACGTTCGACCTGGTCTACACCGGTATTGGCGCGCTCTGCTGGCTGCCCCGCATCGAGCCATGGGCACGCACCGTCGCGGCACTGCTGAAACCGGGCGGGCGACTGTTCCTGCG                                                                                                                                                                                                <  1:831609/236‑1                                                                                   AGTCTGACGTCTATGCCGCCGACAAGGTACTGCCGGCGGGTACGTTCGACCTGGTCTACACCGGTATTGGCGCGCTCTGCTGGCTGCCCCGCATCGAGCCATGGGCACGCACCGTCGCGGCACTGCTGAAACCGGGCGGGCGACTGTTCCTGCGCGA                                                                                                                                                                                             <  1:552649/157‑1                                                                                                                                              gCCGGTATTGGCGCGCTCTGCTGGCTGCCCCGCATCGAGCCATGGGCACGCACCGTCGCGGCACTGCTGAAACCGGGCGGGCGACTGTTCCTGCGCGACGGTGCGTGCCCATGGCTCGATGCGGGGCAGCCAGCA                                                                                                                                                        <  2:337480/134‑1                                                                                                                                                                            CGCATCGAGCCATGGGCACGCACCGTCGCGGCACTGCTGAAACCGGGCGGGCGACTGTTCCTGCGCGACGGTGCGTGCCCATGGCTCGATGCGG                                                                                                                                                                   <  2:573889/94‑1                                                                                                                                                                                                     TCGCGGCACTGCTGAAACCGGGCGGGCGACTGTTCCTGCGCGACGGTGCGTGCCCATGGCTCGATGC                                                                                                                                                                     <  2:98447/67‑1                                                                                                                                                                                                                                           CGCGACGGTGCGTGCCCATGGCTCGATGCGGGGCAGCCAGCAGAGCGCGCCAATACCGGTGTAGACCAGGTCGAACGTACCCGCCGGCAGTACCTTGTCGGCGGCATAGACGTCAGACTCGACATACTGGATGGGCAGCGCACATCGCTCGGCCAATGCCCGTGCTTCGGCCAGCGAAGCCTTGGAATAATC  >  1:128048/1‑192                                                                                                                                                                                                                                            GCGACGGTGCGTGCCCATGGCTCGATGCGGGGCAGCCAGCAGAGCGCGCCAATACCGGTGTAGACCAGGTCGAACGTACCCGCCGGCAGTACCTTGTCGGCGGCATAGACGTCAGACTCGACATACTGGATGGGCAGCGCACATCGCTCGGCCAATGCCCGTGCTTCGGCCA                     <  1:82269/172‑1                                                                                                                                                                                                                                                                                                                                                                                                                                            TGCGGCCTGGATTATTCCAAGGCTTCGCTGGCCGAAGCACGGGCATTGGCCGAGCGATGTGCGCTGCCCATCCAGTATGTCGAGTCTGACGTCTATGCCGCCGACAAGGTACTGCCGGCGGGTACGTTCGACCTGGTCTACACCGGTATTGGCGCGCTCTGCTGGCTGCCCCGCATCGAGCCATGGGCACGCACCGTCGCGGCACTGCTGAAACCGGGCGGGCGACTGTTCCTGCGCGACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4432693‑4432452 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgacggTGCGTGCCCATGGCTCGATGCGGGGCAGCCAGCAGAGCGCGCCAATACCGGTGTAGACCAGGTCGAACGTACCCGCCGGCAGTACCTTGTCGGCGGCATAGACGTCAGACTCGACATACTGGATGGGCAGCGCACATCGCTCGGCCAATGCCCGTGCTTCGGCCAGCGAAGCCTTGGAATAATC  >  AE015451/4432501‑4432684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.