New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5415514	51 (1.020)	5 (0.110)	5/314	NT	9.6%	coding (263/1392 nt)	gabP‑V	gamma‑aminobutyrate permease
	?	AE015451	= 5415639	47 (1.010)					coding (138/1392 nt)	gabP‑V	gamma‑aminobutyrate permease

CCGATGAAGCCCAGGATGGCGGTGACCTTGAGGATGGCAAACCAGAACTCGAACTCGCCGTACTTGGCCACGCTGAACAGGTTGGTACCGGCCAGCAGCAACACCGAAGCCAGGGCGAAGATCCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5415274‑5415514 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggcccagcAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCTATACCATCGGCTGGTTGTACTGGTGGTTCTGGGTACTGGTCATTCCTATCGAAGCATTGGCCGCCGGGCATGTGCTGAACGCCTGGTTCCCGCAG  <  AE015451/5415639‑5415408                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGATGAAGCCCAGGATGGCGGTGACCTTGAGGATGGCAAACCAGAACTCGAACTCGCCGTACTTGGCCACGCTGAACAGGTTGGTACCGGCCAGCAGCAACACCGAAGCCAGGGCGAAGATCCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGC                                                                                                                                                                                                                                               <  1:529307/236‑1                                                                               AGGTTGGTACCGGCCAGCAGCAACACCGAAGCCAGGGCGAAGATCCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCC                                                                                                                                                                                                                                             <  2:15605/160‑1                                                                                         CGGCCAGCAGCAACACCGAAGCCAGGGCGAAGATCCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCACTGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGCTGGTATCGCCGGCCCAG                                                                                                                                                                                                                                           >  2:306840/1‑152                                                                                         CGGCCAGCAGCAACACCGAAGCCAGGGCGAAGATCCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCcgcc                                                                                                                                                                                                                                      >  2:616337/1‑153                                                                                                                         acCCAGCTGTCCCCCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACACCCAGCCGATGGTATAGCCGGCCCA                                                                                                                                                                                                                                            <  2:94039/117‑1                                                                                                                                         GCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATG                                                                                                                                                                       <  1:742871/172‑1                                                                                                                                         GCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATG                                                                                                                                                                       >  2:742868/1‑172                                                                                                                                               ACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTG                                                                                                                                                                                                        >  1:62304/1‑133                                                                                                                                                                                                                CAGTACAACCAGCCGATGGTATAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCTATACCATCGGCTGGTTGTACTGGTGGTTCTGGGTACTG                                                           >  1:562852/1‑209                                                                                                                                                                                                                                TGGTATAGCCGGCCCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCTATACCATCGGCTGGTTGTACTGGTGGGTCTGG                                                                 >  1:279015/1‑187                                                                                                                                                                                                                                             CCAGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCTATACCATCGGCTGGTTGTACTGGTGGTTCTGGGTACTGGTCATTCCTATCGAAGCATTGGCCGCCGGGCA                           >  1:322486/1‑212                                                                                                                                                                                                                                               AGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCTATACCATCGGCTGGTTGTACTGGTGGTTCTGGGTACTGGTCATTCCTATCGAAGCATTGGCCGCCGGGCATGTGCTGAACGCCTGGTTCCCGCAG  >  1:578818/1‑235                                                                                                                                                                                                                                               AGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCTATACCATCGGCTGGTTGTACTGGTGGTTCTGGGTACTGGTCATTCCTA                                                 >  2:414837/1‑188                                                                                                                                                                                                                                               AGCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCTATACCATCGGCTGGTTGTA                                                                              >  2:129188/1‑159                                                                                                                                                                                                                                                GCAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATT                                                                                                                 >  2:170556/1‑123                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGATGAAGCCCAGGATGGCGGTGACCTTGAGGATGGCAAACCAGAACTCGAACTCGCCGTACTTGGCCACGCTGAACAGGTTGGTACCGGCCAGCAGCAACACCGAAGCCAGGGCGAAGATCCAGCTGTCCACCTGCGGGAACCAGGCGTTCAGCACATGCCCGGCGGCCAATGCTTCGATAGGAATGACCAGTACCCAGAACCACCAGTACAACCAGCCGATGGTATAGCCGGCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5415274‑5415514 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggcccagcAACCATAATTTCCTATTTCGTGGCCGGTACCCTGGTGGTACTGGTCATGCGCATGCTCGGCGAAATGGCCGTGGCGCACCCCGACACCGGATCGTTTTCCACCTATGCCGACCAGGCCATTGGCCGCTGGGCCGGCTATACCATCGGCTGGTTGTACTGGTGGTTCTGGGTACTGGTCATTCCTATCGAAGCATTGGCCGCCGGGCATGTGCTGAACGCCTGGTTCCCGCAG  <  AE015451/5415639‑5415408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.